AMCG00013020


Basic Information

Item Value
gene id AMCG00013020
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16922369 ~ 16979543 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013020
ATGCTGGTCATCCTGCTGAACTGTGTCACCCTGGGGATGTTCCACCCGTGTGAGGATATCCACTGCATCTCTGAACGCTGCAAAATCCTGAAGGACTTTGACGACTTCATCTTTGCTTTCTTTGCTGTGGAAATGGTGATCAAAATGGTGGCTCTGGGCATCTTTGGGAAGAAGTGTTACCTTGGTGACACATGGAACAGGCTGGATTTCTTCATCGTACTGGCAGGGATGCTGGAGTACTCCCTCAACCTGCAGAACGTCAGCTTCTCGGCCGTGCGCACCGTAAGAGTCCTCCGACCGCTGCGAGCCATCAACCGCGTCCCCAGTATGCGCATCCTGGTGACGCTGCTCCTGGACACCCTGCCCATGCTGGGGAATGTTCTGCTGCTCTGCTTCTTCGTCTTCTTTATCTTCGGCATCGTGGGTGTGCAGCTGTGGGCCGGCCTCCTCCGCAACCGCTGCTTCTGGCCCGAGAACTTCACTGTCCCCCAGTCCCTGGGCCTGCACAACTACTACCACACGGAGAACGACGACGAGAACCCCTTCATCTGCTCCCAGCCACGGGAGAACGGCATGCGCTACTGCCGCAGCATCCCCACACTGCGTGAGGAGGGCCAGACCTGCCTGCTGGACTCTAGCGCCTACAACAACACGGACAACACCACCTGCGTCAACTGGAACCAGTACTACACCAACTGCTCAGCCGGGGACGTCAACCCCTTCAAGGGAGCCATCAACTTCGACAACATCGGTTTCGCCTGGATTGCCATCTTCCAGGTGATCACGTTGGAGGGCTGGGTGGACATCATGTACTTCGTAATGGACGCACACTCTTTCtacaatttcatttatttcatccTGCTGATTATAGTGGGTTCCTTCTTCATGATCAACCTGTGCCTGGTGGTCATCGCCACGCAGTTTTCGGAGACCAAGCAGCGCGAGAGTCAGCTGATGAAGGAGCAGCGGGTGCGCTTCATGTCTAATGCCAGCACTCTAGCCAGCTTCTCTGAGCCGGGCAGCTGCTATGATGAGCTGCTCAAGTACCTGGTGCACGTGGTGCGCAAGGCCAGTCGGCAGGTGGGCCAGGTGTACCGGGTGGCCGCCACCAAGGCAGGGCTGCGCTTGGGCCCCAAACCAGGCACCGAGCAGCCTTCAAACAAGCGGCGGCGCAGGAAACAGCGGCGGGCATCTGTGCACCACCTGGTTCACCATcatcaccaccatcaccaccactaCCACGTGGGCAATGGCAGCCTGCGGGCCCGGCCCAATCCAGAGCTGGGAGACGTGGAGACGGGTTCCCTGCATCCTGGCCCGGCCTGCCTCATGCTGCCGCCTGCTTCCCCTGCCTCCCTTCATGAAGCTCCCATCCCACCACTGCCCGCCCCTGGCAACAGTGAGTCTGTGCACAGTGTCTACCACGCCGACTGCCACTTTGAGCCCGTCCACTGCAGCCCCAGCCCTGGGCTTCAGGGCCCCAAGAGGAACTCGGTGTCTTGTGCTTCCATCCCCAAAAACTACCCCACAGTGCACCCGTCCTCCCCACAGGAGCTCCACAAGGAGAAGGCCCTGGGGGAGTCTGCTAACAGCAGCTGTGGCGGAGGCACCCTGACCAACCTTAACATCCCCCCCCGGCCCTTTGGTACCATGAACCGAGTCCTGGAAACACAGAGTTCTGGTCCTTGTAAAGGCTCATGCAAACTGGCAAGCAACTGTAGCAACCTGGACAacctgacctttgaccctgaGAGCTGCCCGTACTGCGCCAAATCCGCCAACAATGACTCCGAGGGTACTGACAACGAGACAATGGATTCCGACAGCGAGGGCATCTACGAGTTCACGCAGGACGCCCACTACCGGGATCAGAGGGACACCAAGAAAGGGAGCTCCAAAGTGGGGGCGAAGGTGGGCCGCGTGTTACACTTCTGGAGGTTGGTGTGCGAGACCTTCCGCAAGATTGTGGACAGCAAGTACTTCGGGAGAGGGATCATGATTGCCATTCTCATCAACACACTCAGCATGGGCATCGAGTACCATGAGCAGAACCAAGCCACTTCTTCTGGAGAGCCAGTGTCCATGCTGGTGGAGCTGGGAACCTGGGTTACCTCCATCACCTCCCGCCTGTCCTCTGTAGGCCTCACAGCATGGAGTGGGAGACGTTTCATGGGCACTAATGACCCCAGGCAGACTTTGCAGCCTTCTGATAGTAGTGAAGTGTTGAAGCACAGTAGCTACTACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013020 True 2247 mRNA 0.58 9 16922369 16979543

Neighbor

gene id symbol gene type direction distance location
AMCG00013021 NA coding downstream 32418 16843833 ~ 16889951 (-)
AMCG00013019 NA coding downstream 98878 16783653 ~ 16823491 (-)
AMCG00013013 NA coding downstream 154007 16756387 ~ 16768362 (-)
AMCG00013014 LOC107666920,LOC107706881,LOC107669499 coding downstream 186573 16732929 ~ 16735796 (-)
AMCG00013011 NA coding downstream 203712 16716516 ~ 16718657 (-)
AMCG00013022 NA coding upstream 149864 17129407 ~ 17135059 (-)
AMCG00013026 spata20,LOC104963383 coding upstream 423836 17403379 ~ 17412455 (-)
AMCG00013024 NA coding upstream 434521 17414064 ~ 17462961 (-)
AMCG00013025 atp5h,LOC101487002,LOC107587968 coding upstream 484946 17464489 ~ 17468508 (-)
AMCG00013027 NA coding upstream 580218 17559761 ~ 17561006 (-)
G41538 NA non-coding downstream 298596 16623419 ~ 16623773 (-)
G41518 NA non-coding downstream 588774 16333231 ~ 16333595 (-)
G41510 NA non-coding downstream 704774 16217381 ~ 16217595 (-)
G41506 NA non-coding downstream 714192 16169309 ~ 16208177 (-)
G41460 NA non-coding downstream 886433 16035647 ~ 16035936 (-)
G41612 NA non-coding upstream 167172 17146715 ~ 17146981 (-)
G41627 NA non-coding upstream 322600 17302143 ~ 17302892 (-)
G41647 NA non-coding upstream 497319 17476862 ~ 17477270 (-)
G41648 NA non-coding upstream 498272 17477815 ~ 17479389 (-)
G41655 galk1 non-coding upstream 531590 17511133 ~ 17511904 (-)
AMCG00013018 NA other downstream 283282 16630231 ~ 16639087 (-)
AMCG00012985 NA other downstream 1199912 15719513 ~ 15722457 (-)
AMCG00012931 snrpf other downstream 2577897 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 3806882 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 4016036 12896520 ~ 12906333 (-)
AMCG00013038 NA other upstream 900682 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 950355 17929898 ~ 18046714 (-)
G41807 NA other upstream 1196518 18176061 ~ 18191522 (-)
G41836 NA other upstream 1263207 18242750 ~ 18244093 (-)
AMCG00013051 NA other upstream 1278546 18258089 ~ 18264843 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004773 cacna1g coding NC_007123.7 CM002896.2 27704015 ~ 28073562 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_06733190_06869248 CACNA1G coding CI01000063 null 6733190 ~ 6869248 (+)