AMCG00013047


Basic Information

Item Value
gene id AMCG00013047
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18158842 ~ 18230238 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013047
ATGGATCGCTGCGTCCGGAAACTTTTCCTCTTCATCGTGGTGGGAGCAGTGGTCTTCATTTTCTGCTATGACTTCTTCTCCACAGAGCCGGTGCATAAAATCATCCGGGGCCGAGATTCCCAGACTTGGTCTGCTGTTTTTCCCTCAGGAATGAGAGGCAAACCAGTTCCTTTTATTAAGTACCAGGATGCTGCACAGAAAGGTCCAGAACACAAGCAGGACACACAATTGGGAATGTTGGCACAAGGACTCACAGAGGAGAAATCCAGTAATGCAAAGCTCAAAGATAACTCTCCTAAACCGGTCAGAACTGCTATGGGCAAGCCAAGTACCCCAGAAAAGCCCCAACCTAAAATAACCAAAGCCTCTACTGCCAAGAAGGTTACTAATGAGAAGGCCCGACCTGTCTCTCCTAGAACTACTAAAGCtgccacaacaaaaataatttccaaaaataaaccaaagtcAACTGCAAAAGCCAATCAGAAAGAACTTCCTGTGGTCGTGACCCCTACACTTGTGCCACCAATGGATAAACAAGACTTTAAGAAGATGCCAGACTGGGATTTTGAGGATATCTACCTTAGGGAACCCCAGCCAAGACAGACGTACAGACACCCCTTGCAGATGCTTCACGATGCAGTGAAGTTTAGTttTACATTTGATAGTATTGTTTTCTCTTCAACAACATCGAGGCTGTGTTTCCGGGTAATTGaaagtgtgAATCAGGGTCTTGTGTTTCTGTCCCTCAGAGGAACCTTTGTGGGGCTCATCCACAAAGAAACAGAGAACAAGACAGAGTTCCTGATCACctcctcttTGGTCATCATGGTTTCATACTGGCTGGCTCTTAGCTTCCCTGGGCTGTACTTCAGAGACATGTCCATCTCCTCCACATCTGCAGTTACAGCATCTGACTGTGGTGTGAGAATACATACCGTAGTCAAACTCCTGTTCAGTTTTGTGGGGCACAGTCTTCTCTGCCTCAGTGGGGAATCCCTGAaacagaacagcagcagtggGTCAGAGGGCATCGGGGAAGGGGGGGGATGTCTGCCAGAAACTATGTACAATGAGAACAAGTGCACGCCCCGCCCCATTAAAGAGAAGAGTGTTTGCCAAACATCCCCATACAGATTTATGAGGCCATGTTATCAGCAGGATATGGGCACTGAGAAAAACACCAACGTCGAGCTCAGGTGTAAGGTTAAGGGACATGGGAGCGTTAGCCCTGCATGCACCACTGACGTCACAGAGCCAGTCACAAGATCAACACGGAGGCGGGCAGCTGTCTGGCTTCCCCAGGCTCTGCTGGGAGAACCAACATCGTCTTTGAGAGCGGAGAAACTTGTTACAACAGCATTGCACCAGGGAGATACTGAACGAATGCCTCATCTCTTCGTTGGGGGAAGAAAAGGCCTTCAGAGAGAAATAAATCAGCCCTGCCAGTGCAGAACAGCTGGACAGCTTGGCCTGCTTCCCACACTGGCGTCTGACAAGAGTCTGGAACTCTCCTGCTGCAAAGACAACTTCTCTACTGCTGCCATGGAGGAGCACAAGGGCAAGAGCAGAGCCAAGAAAAGCTGCATTAGCACTGCATCTCAGGTCCCCACATTCTTTAGAAAGATGAGCTCCAGCCTTGAGAACACTAACAGTAGAGGCCAGCACACTGCTCCAAAGGGAAATTCCAACGGCAAGAGGTCAACAGCAACGGGAGCAAACAGCACAGAGATACGCAGATTCCATTACAGAGAG
>TU52085
AAGACCTTTGTGCAATTATTCTCTTTATTGTAtcagttaatgaaaaaaataacaacttttGTCAAAAACTTAtaggtaattaaaaataaagtgtagcccacatttagttttttttttttttttttctaattctgCCTCAGTACAGACACCCCTTGCAGATGCTTCACGATGCAGTGAAGTTTAGTGTGAGCAGAGAAAAGTCTTAATTCATGGAACAGCACTCAGAACTAATAAAAGGATACTCTGCTTGTTCCTGCTTCTGAGGATCTTAACTGGTCAAATCAAAAGACTGCTTTGATACTTTTTACCCATTTAccttttgttgatttttttataaaaaataaataaaacaaaatcaggatgcatgcatgcatatgaTTTCATTTGGGTCAAAGTTTGTCTTTGTTTCATCTTATTTTCAGCATCCATTGTGGTCTGAGCACAGATCAGACATCTTCCCTCTACACTTTACACTAATTTACCTCACCTCTGTAGCTTTGTCATACTTTTATTATTCATCACTGCTCTAAcctgcggggggggggggtttgtgaAAAAGCAGACAAGattcaatttcaatccaatcAAAAAGCACAGACCTTTAGCACAGCAGACTGTAATCAGCATCCTGATGTCAAGACACAGAATTTGGGGGTTTAGGCTGGTTGAGAATGCTCAACGTGGACTGGAAGGAGTTCGCAGTGTTCCCTAGCCTGTATCATCCCCATGGTTAAAGCAGAAGCCGAGCACCATGATGACTTCTAAATGGAGTAGAGCTTCAGCTGTTCCTCCACATCTCCCTCGGTCATCTCCCCGAATGTGTCCTGGTTCTCCTTGAGCAGCCTGAAGATGGCTGCCAGCTGCTCCCGCTGAactctgaaaacacacacaccagcaacCTGAGCCACTTCAAGCTCCACTGTAAACCCTTACATTGAGTCAGCTGGGAATGGAGTCATGGCGATTCATTCTCCAGATTACGGAGCAGGCAGATGTGGTCCTACACATACATTTCCACAGGCTCTGTTTGATGGTTTCAATCAAGGAGAATTTACAGCATCACAAGGAGGGGAATCTGGGTATTTGCGGTTAAGAAAACCCGTTTCAGTGAGAAATTCCACTCCATTGGAATAGATGTCTTGAATGCCTTATTTGCACAGCAGTGCCAGCATTTTAGAATTCCTACCCTGCCTAACATGATTAACATGATTTCTTAGTGatttcctctttttctctcagttTACATTTGATAGTATTGTTTTCTCTTCAACAACATCGAGGCTGTGTTTCCGGGTAATTGGTGAGGATTGAGGGTTGCACAACTCTATTTGATTCAGCCAGCTCTGCAAAAATGAACTAAAGGCAATGTGAACAGTGACCTTTAACAAAAGGCAAATATGTCCCCCACAACATAAGttatttcatacatttccaTGTTGAAAACACGGGTTAACACATCTGAATACAGCCTTGTACACGATGGGAGTGGATATGATCCCAATTCCTTAACCTAGCGGGTAGTTGTGAGAATAACATCTTGTTACAAATCTCTTCGGTAACAAGCTGCACCACGGCACAACTATGGAACAAGCATAGTTAAAGAGCAGAACTCCTAGGGTAAACTGATCAAGGTAAACCTGCACAAGGACATTTCCTGACCCTTCACTATGCATCtcgaaaatgttttttttttaaaggatagCTGCCAGTCATTGAAAGTTAAGGATCAtgcatcatttaattaaattgtgctgTTAATTGTAATCCTTTGGGTATGGCCCAGTTGTAAGGATTaccataattatttttattaaagacattaagcacatacagtgaggggatttgatcccctgctgattttgtatgtttgcccactgacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013047 False 1755 mRNA 0.49 12 18158842 18230238
TU52085 True 1882 lncRNA 0.40 1 18193251 18195132

Neighbor

gene id symbol gene type direction distance location
AMCG00013045 NA coding upstream 4720 18151452 ~ 18154122 (+)
AMCG00013041 NA coding upstream 269075 17866214 ~ 17889767 (+)
AMCG00013040 NA coding upstream 305946 17848756 ~ 17852896 (+)
AMCG00013035 NA coding upstream 470202 17657119 ~ 17688640 (+)
AMCG00013030 NA coding upstream 520146 17601378 ~ 17638696 (+)
AMCG00013046 NA coding downstream 25207 18255445 ~ 18258332 (+)
AMCG00013053 mfsd11,mfs11 coding downstream 36030 18266268 ~ 18280801 (+)
AMCG00013052 NA coding downstream 102487 18332725 ~ 18351553 (+)
AMCG00013054 NA coding downstream 129317 18359555 ~ 18362887 (+)
AMCG00013057 NA coding downstream 158573 18388811 ~ 18396122 (+)
G41744 NA non-coding upstream 140329 18003948 ~ 18018513 (+)
G41743 NA non-coding upstream 145164 17929935 ~ 18013678 (+)
G41740 NA non-coding upstream 173533 17921170 ~ 17985309 (+)
G41683 NA non-coding upstream 581086 17577445 ~ 17577756 (+)
G41649 NA non-coding upstream 672160 17480579 ~ 17486682 (+)
G41810 NA non-coding downstream 9754 18239992 ~ 18240369 (+)
G41812 NA non-coding downstream 10230 18240468 ~ 18242583 (+)
G41814 NA non-coding downstream 12545 18242783 ~ 18244143 (+)
G41818 srsf2,srsf2b,LOC105012916,LOC108430244,LOC106612293 non-coding downstream 31725 18261963 ~ 18265695 (+)
G41821 NA non-coding downstream 53390 18283628 ~ 18284855 (+)
AMCG00013015 NA other upstream 1429309 16719355 ~ 16729533 (+)
G41264 hbp1,LOC108230206,LOC107701066 other upstream 2340500 15477179 ~ 15818342 (+)
AMCG00012987 NA other upstream 2367215 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 2527839 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 2585374 15570906 ~ 15573468 (+)
AMCG00013068 NA other downstream 737191 18967429 ~ 18974362 (+)
G41978 NA other downstream 795323 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 3039437 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 3055793 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 3140605 21370843 ~ 21421316 (+)

Expression


Co-expression Network