AMCG00013528 (LOC107709035)


Basic Information

Item Value
gene id AMCG00013528
gene name LOC107709035
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33596330 ~ 33609620 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013528
ATGGATAAGGCTGTTATAAAGGTGCTGTGTGGGATTGCGCAGGGCTTCAGTCCGGACGAGCAGGACAGGAGCAGCCGCGCTGGTGACACTGACCTGGGCCCGGCGCGAGCAGCCCGCTCCCGGAAGCGGCTCATTGCGGTGTGGGCGGGGCCTAGGCGGCACAGCCGGGATGGGATCCAATCAGAGCAGAGCTGGGAGGCGGCCAGCCCCGGGCGTGGGCGGTGCCAGGAGAGTTCCAGGTACCCATTGATGGAGAAGATTGACAACAGCTCGGCGGGTCCCAGCCCCTCCGAGATGCCACAGGCACCTGTGCCCCACCCCATGCCCCCTCTACGGGAGCCAGCGTGGCAAGAGACCTCCGGGCAGCCCAGGCTGGACTGGCACCGGCACACCCCCAGCTTGCCGCCACTGCAGCCCCCCCAGGCCAGCCTGAGCCCCTACAGTGCCAACATCGTGCCAACGGTCCCCCGAGCCAAGggccgTGGCGCACACTCGCAGGGCGACTACCTGTGCCTGGTGTGTAACAAGGTGTTCCCGCTCCAGCGCATGCTCACGCGCCACCTCAAGTGCCACAGCATGGTGAAGAAGCACGTGTGCCGCTACTGCGCCAAGGGCTTCAATGACACCTTCGACCTCAAGAGGCACATGCGCACGCATACAGGCATCCGTCCGTACCGCTGCGAGCTGTGCGAGAAGGCCTTCACGCAGCGCTGCTCGCTCGAGTCCCACCTGAAGAAAATCCACGGGGTGCGGCAGCAGTACGCCTACCGTGAGCGCCGCTCCAAGATCTTCGTGTGCGAGGACTGCGGCTTCACTTCCACCCACGGCGACGAGTACTACCTGCACATCCGCGAACGGCACCCCGGCAGCCCCGCCCTGCGCCGCTACTACCGCAAGCACGGCCACACGGGTGCCGCTGGGCACAAACTGGGCGCTGTGGTGCTGTACCCCGGTGCCGGCTACTACCTGTGA

Function

NR:

description
PREDICTED: transcription factor Ovo-like 2, partial

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K09216 OVOL; ovo

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013528 True 972 mRNA 0.66 5 33596330 33609620

Neighbor

gene id symbol gene type direction distance location
AMCG00013527 NA coding downstream 19726 33557031 ~ 33576604 (-)
AMCG00013517 NA coding downstream 155394 33429105 ~ 33440936 (-)
AMCG00013513 LOC106580829,LOC106612625,LOC105026889 coding downstream 229455 33354581 ~ 33366875 (-)
AMCG00013511 NA coding downstream 332454 33246164 ~ 33263876 (-)
AMCG00013506 NA coding downstream 452942 33130054 ~ 33143388 (-)
AMCG00013534 lrfn1,LOC106613031 coding upstream 922810 34532430 ~ 34544065 (-)
AMCG00013535 NA coding upstream 934457 34544077 ~ 34648703 (-)
AMCG00013538 NA coding upstream 1382262 34991882 ~ 34992115 (-)
AMCG00013536 NA coding upstream 1445997 35055617 ~ 35057435 (-)
AMCG00013537 LOC108246317 coding upstream 1456629 35066249 ~ 35067931 (-)
G44995 NA non-coding downstream 6241 33588590 ~ 33590089 (-)
G44941 NA non-coding downstream 174219 33416296 ~ 33422111 (-)
G44940 NA non-coding downstream 180111 33415533 ~ 33416219 (-)
G44936 NA non-coding downstream 247810 33343009 ~ 33348520 (-)
G44872 NA non-coding downstream 500912 33094397 ~ 33095418 (-)
G45007 NA non-coding upstream 5788 33615408 ~ 33615642 (-)
G45010 NA non-coding upstream 11832 33621452 ~ 33621738 (-)
G45035 NA non-coding upstream 61123 33670743 ~ 33671683 (-)
G45038 NA non-coding upstream 73203 33682823 ~ 33683081 (-)
G45039 NA non-coding upstream 74769 33684389 ~ 33684898 (-)
AMCG00013518 NA other downstream 94583 33468849 ~ 33501747 (-)
AMCG00013488 NA other downstream 968426 32622153 ~ 32627904 (-)
G44719 NA other downstream 1028378 32565760 ~ 32567952 (-)
AMCG00013425 NA other downstream 2853687 30730287 ~ 30742643 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 3109999 30483305 ~ 30486331 (-)
G45037 NA other upstream 68604 33678224 ~ 33678907 (-)
AMCG00013531 NA other upstream 83224 33692844 ~ 33699712 (-)
AMCG00013578 NA other upstream 3269573 36879193 ~ 36885493 (-)
G45468 NA other upstream 3349557 36959177 ~ 36959914 (-)
G45571 NA other upstream 3521238 37130858 ~ 37223824 (-)

Expression


Co-expression Network