AMCG00013663 (b9d2)


Basic Information

Item Value
gene id AMCG00013663
gene name b9d2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38543850 ~ 38546035 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013663
atgaatacagtatatgtgttgctgtgtgttcCAGGGGGAGCGTGGCGGCTGCTGTCCGGGCTGAGGGAGGGGCAGACCCAGGTAGACTCTCCCCAGACTGGGGACACGGCCTACTGGAGCCATCCCATCGACCTGCACTACACCACCAAGGGACTGCAGGgttggCCCAAGCTCCACCTGCAGGTGTGGAGTGAGGACTGGCTGGGCCGCTGCCAGCTGTGTGGCTACGGCTTCCTGCACCTGCCCTCGTCCCCGGGGCCGCATCGCCTGCGCTGCCCCACTTGGCTGCCCCTTGGGGGGACGTGGCCGGAGCGGCTGGCCCACAGCTTCGTAGGTGGGGGGCCCCAGCTGCGCTCCCCCGATCTCGTCTACACCGGGGCGCAGAGGTACCGGCTGCATACCGCCGCCGCCGGGACcgtggagctggagctggccgTGGCTCTCCGGCACTTCGATCGATACGGAGTGGAGAGCTGA
>TU57351
NNNacagtgtgttgctgtgtgtgaaGCAGTGTGTCTCTacagtgtgttgctgtgtgttcCAGGGGGAGCGTGGCGGCTGCTGTCCGGGCTGAGGGAGGGGCAGACCCAGGTAGACTCTCCCCAGACTGGGGACACGGCCTACTGGAGCCATCCCATCGACCTGCACTACACCACCAAGGGACTGCAGGgttggCCCAAGCTCCACCTGCAGGTGTGGAGTGAGGACTGGCTGGGCCGCTGCCAGCTGTGTGGCTACGGCTTCCTGCACCTGCCCTCGTCCCCGGGGCCGCATCGCCTGCGCTGCCCCACTTGGCTGCCCCTTGGGGGGACGTGGCCGGAGCGGCTGGCCCACAGCTTCGTAGGTGGGGGGCCCCAGCTGCGCTCCCCCGATCTCGTCTACACCGGGGCGCAGAGGTACCGGCTGCATACCGCCGCCGCCGGGACcgtggagctggagctggccgTGGCTCTCCGGCACTTCGATCGATACGGAGTGGAGAGCTGAGAGgtgggggaaggggagagagaggggaatcAAGTCCACTCCAGTACAGTGTTGCAATACCACAAACTACACCCTATATAGGCTGTGACTGTCTCTAGGTATCTGTCTTTTGTCTGACTTTGTTTTGTACTGTGTCTGGTTGCTCGCTGCTGTTTTCAAACCTAGATACGACCACCAGGGGTCGGGCTGACCCCACTAATGTTTTCTTCCATGTAGTGTCACagtcacaaacaaacaagcaatatACTCtgtcaatatgtatatatgatttttatatagatatattcaCAAGCCTTTTTTATATCCTGTAGTCTGTGTTACAATAATGAGCCTAtaagttgtttttattgtgtgtttgtgt

Function

symbol description
b9d2 Predicted to enable gamma-tubulin binding activity. Involved in cilium assembly and establishment or maintenance of cell polarity. Acts upstream of or within establishment of planar polarity and opsin transport. Located in cilium. Orthologous to human B9D2 (B9 domain containing 2).

NR:

description
PREDICTED: B9 domain-containing protein 2

GO:

id name namespace
GO:0001736 establishment of planar polarity biological_process
GO:0036372 opsin transport biological_process
GO:0036038 MKS complex cellular_component
GO:0005813 centrosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043015 gamma-tubulin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013663 False 477 mRNA 0.68 3 38544211 38546035
TU57351 True 866 lncRNA 0.56 2 38543850 38544859

Neighbor

gene id symbol gene type direction distance location
AMCG00013660 sympk,LOC104962469,LOC107595511,LOC107712124 coding downstream 7628 38524755 ~ 38536222 (-)
AMCG00013657 NA coding downstream 22828 38515036 ~ 38521022 (-)
AMCG00013658 NA coding downstream 41019 38495950 ~ 38502831 (-)
AMCG00013652 bckdha coding downstream 67687 38472336 ~ 38476163 (-)
AMCG00013651 NA coding downstream 109688 38417544 ~ 38434162 (-)
AMCG00013659 NA coding upstream 23417 38569452 ~ 38574128 (-)
AMCG00013662 NA coding upstream 34475 38580510 ~ 38585732 (-)
AMCG00013667 NA coding upstream 46252 38592287 ~ 38597883 (-)
AMCG00013670 NA coding upstream 62054 38608089 ~ 38619473 (-)
AMCG00013666 NA coding upstream 84159 38630194 ~ 38639923 (-)
G46011 NA non-coding downstream 508 38541276 ~ 38543342 (-)
G45971 NA non-coding downstream 85051 38457256 ~ 38458799 (-)
G45933 NA non-coding downstream 144852 38397935 ~ 38398998 (-)
G45930 NA non-coding downstream 186455 38355674 ~ 38357395 (-)
G45912 NA non-coding downstream 316663 38226185 ~ 38227187 (-)
G46114 NA non-coding upstream 221391 38767426 ~ 38768235 (-)
G46134 NA non-coding upstream 280469 38826504 ~ 38830732 (-)
G46144 NA non-coding upstream 398778 38944813 ~ 38945061 (-)
G46175 NA non-coding upstream 628520 39174555 ~ 39177975 (-)
G46236 NA non-coding upstream 872456 39418491 ~ 39418739 (-)
AMCG00013661 tmem91,LOC107676753,LOC107757682,LOC107662142,LOC107758240 other downstream 59581 38478552 ~ 38484269 (-)
AMCG00013650 NA other downstream 92503 38445846 ~ 38451347 (-)
AMCG00013641 NA other downstream 128647 38353850 ~ 38415203 (-)
G45917 NA other downstream 294259 38244821 ~ 38249591 (-)
G45906 NA other downstream 312559 38193034 ~ 38231291 (-)
AMCG00013669 NA other upstream 42944 38588979 ~ 38591202 (-)
AMCG00013677 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308 other upstream 151360 38697395 ~ 38701074 (-)
AMCG00013685 NA other upstream 235989 38782024 ~ 38783433 (-)
AMCG00013691 NA other upstream 396740 38942775 ~ 38971579 (-)
G46333 NA other upstream 1727356 40273391 ~ 40275098 (-)

Expression


Co-expression Network