AMCG00013677 (h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308)


Basic Information

Item Value
gene id AMCG00013677
gene name h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38697395 ~ 38701074 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013677
ATGGCTCGTACTAAGCAGACCGCCCGTAAGTCCACCGGGGGGAAGGCCCCACGCAAGCAGCTGGCCACCAAGGCTGCTCGTAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCACATCGTTACAGGCCCGGGACAGTGGCTCTGAGAGAGATCAGACGCTACCAGAAGTCCACCGAACTTCTGATCCGGAAGCTGCCCACAAAGTGA
>TU57455
gcaGAGTGATTGACACGGCGGCCATTTTCCCGCTGGACGCTCCGCTCTCATTGTGTGAGAGACACAGTAAATACTGACACGGCCAGACtaccaaacattttatttcacaaattaaCCCGCACTTTCCCACAGCTCCTCTCCATGGCTCGTACTAAGCAGACCGCCCGTAAGTCCACCGGGGGGAAGGCCCCACGCAAGCAGCTGGCCACCAAGGCTGCTCGTAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCACATCGTTACAGGCCCGGGACAGTGGCTCTGAGAGAGATCAGACGCTACCAGAAGTCCACCGAACTTCTGATCCGGAAGCTGCCGTTCCAGCGGCTGGTCAGAGAGATCGCCCAGGACTTCAAGACTGACCTGCGCTTCCAGAGCGCTGCCATCGGGGCCCTGCAGgaggcCAGCGAGGCATACCTGGTGGGCCTGTTTGAGGACACTAACCTGTGTGCCATCCACGCCAAGAGAGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGCATCCGTGGGGAGCGTGCCTAGACggctcctctcctcctccccctgtTCCTCCTGCTCTCCCTGCTCCCCATCCccttccctgcctccctctttccctctccctttctctctctctctctctctctctctctcgtagcTGTTTGTCAGTGGTGGTGTTGATGAGATCAGTGTGTAGTCGCGTGTGTATTAGTCCTGTCGGACGCAGACTCTTAGGGTACCCTTCCTGTGCATGTACCGGCTCTGTGCTGAGCAGGCAGACGGACAGACATACTGACAGGAGGACATGGTGGGACAagacagactgtgtgtgtgtctctgtgaatcAGGGGTTTGTGTtattaatgagagagagagagagagagcgcgcaCGCGCGCGCTGTGTTGGATTGAACTGATTCactggacacagagacagtcagATGACTTAGACACGCATACCGACACAGACAAACAGCCAGggactcacagacagacagccgGGGTGTATCTGCTGGCCAGGGGCACATCTCCCTCAGCAGGGTGCTACAAATAACTGCCCCGGCCTGGTCTCGGCACCCccctccctgagagagagggatggggggggggttggaggCAGGGgtatgtgtgttgggggtgtaTCTTCTTTGTGAATGTTGTTTCCATTGTGATAGATTGGTGTGTCTGCACTCCACAGCTTTGagcagagaggggagggagggaggtgtaAGCACTGTGGAAACAGAAATGCAGGGGGGGCAGGGTGTCTgtacagtctgtctgtctgtccgtcctcTGTTCAGCACAAAGTGAAACGTTTCAACTACAGGCAACTCTGAATTCTTATTTAGATAACaatgattatgatttattaagtACTTGTTTGGTTGGTGTCTctaatttttttaactttctgcattttattttgtagtatgTATTGCTATATTTACTCTCGTGcgtacacacacaaatacacacagtcTGTTCTTAATGGCTGAAatcaatttaataaagaaacagactatttaaatgaaaaatgacaaaaacatgtttttacaaaaCAGATAAAAGTTCTTTAATTTTCCTATTGTCTCCCTTTCTCTATCCATATCTTGTCTTCTTCCTCTGCTTCCCTCCcccttgttttttatttctctatctTAGTCCATCTTCCTCCCCATATTTTTCCCTTCTGAATCACTCTCAATACCCCCCCCCAACTCTCTTGTTTCTTGCTGTCTGTCTGGTTGGTGTGATGCCATATATATTAtcgtctttgttttttttctattttgatttaaatgtttcagaagTTTAAAAGCTGATCTTTGTAATTTCCAGGTTTCTCATATTAAGGTGGTAATAAATAGATGTTACACAAACCTGTCTCTgccagtctctgtgtgtgtgtg

Function

symbol description
h3f3a Part of nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

NR:

description
PREDICTED: histone H3.3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013677 False 210 mRNA 0.60 3 38697994 38699637
TU57455 True 1922 TUCP 0.49 4 38697395 38701074

Neighbor

gene id symbol gene type direction distance location
AMCG00013668 NA coding downstream 51203 38641042 ~ 38646192 (-)
AMCG00013666 NA coding downstream 57472 38630194 ~ 38639923 (-)
AMCG00013670 NA coding downstream 77922 38608089 ~ 38619473 (-)
AMCG00013667 NA coding downstream 99512 38592287 ~ 38597883 (-)
AMCG00013662 NA coding downstream 111663 38580510 ~ 38585732 (-)
AMCG00013675 LOC106612618,LOC106580837,LOC105026880,LOC102789735,LOC100701743 coding upstream 40781 38741855 ~ 38744967 (-)
AMCG00013676 NA coding upstream 56811 38757885 ~ 38762603 (-)
AMCG00013684 NA coding upstream 68634 38769708 ~ 38770709 (-)
AMCG00013686 NA coding upstream 95321 38796395 ~ 38802200 (-)
AMCG00013687 NA coding upstream 144714 38845788 ~ 38851954 (-)
G46003 NA non-coding downstream 146248 38502342 ~ 38551147 (-)
G46011 NA non-coding downstream 154053 38541276 ~ 38543342 (-)
G45971 NA non-coding downstream 238596 38457256 ~ 38458799 (-)
G45933 NA non-coding downstream 298397 38397935 ~ 38398998 (-)
G45930 NA non-coding downstream 340000 38355674 ~ 38357395 (-)
G46114 NA non-coding upstream 66352 38767426 ~ 38768235 (-)
G46134 NA non-coding upstream 125430 38826504 ~ 38830732 (-)
G46144 NA non-coding upstream 243739 38944813 ~ 38945061 (-)
G46175 NA non-coding upstream 473481 39174555 ~ 39177975 (-)
G46236 NA non-coding upstream 717417 39418491 ~ 39418739 (-)
AMCG00013669 NA other downstream 106193 38588979 ~ 38591202 (-)
AMCG00013663 b9d2 other downstream 151360 38543850 ~ 38546035 (-)
AMCG00013661 tmem91,LOC107676753,LOC107757682,LOC107662142,LOC107758240 other downstream 213126 38478552 ~ 38484269 (-)
AMCG00013650 NA other downstream 246048 38445846 ~ 38451347 (-)
AMCG00013641 NA other downstream 282192 38353850 ~ 38415203 (-)
AMCG00013685 NA other upstream 80950 38782024 ~ 38783433 (-)
AMCG00013691 NA other upstream 241701 38942775 ~ 38971579 (-)
G46333 NA other upstream 1572317 40273391 ~ 40275098 (-)
AMCG00013730 NA other upstream 1684987 40386061 ~ 40428625 (-)
G46418 NA other upstream 1885742 40586816 ~ 40587392 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G193179 NA non-coding NC_035918.1 CM008321.1 27328742 ~ 27331162 (-)