AMCG00013691


Basic Information

Item Value
gene id AMCG00013691
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38942775 ~ 38971579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013691
ATGAATGTGTTTCAGTCCCAGTGCGCTAGGGAAGATGGATTCATTCCCTGGTCTGATTTGGAGGATacGTGCCAGGCATTTGTCTGGATCACACTCAAAACCTGCCACTGCAGGAGCAAGATTAAGACCACAGACGGCTTCTCTGACGCCCGTCAGAGCTGCTTCCCGCAGCGGAGAGGCACCGTGTGCGATCTCAACTCCTTCATCCCGAGCCGGAGAGACAAGagtACCTTAACATTACAAAAGAGTGATATATGTTCTGCACGATTCCGGACGCACTTGCAGGCAGGAGGCGGAGAGGTGCTGCCGGAGCTGGTTGCCATAGCGACGAGgCTGCATTACGCACGTTCTGCTGCAGCCAGGAAGCCGGGCTCTGTGGAGGCAGCttcctttgaaatgcacaacacGACATCCTTGatgtTGCTTCCCTGCACTGTATCAGGACTACCTTTACTGCTGTGTGTTGCAGGCAACGTCATATCTCCTAAGGACACTGGGGACGCCAGGTCGGTCAAAATTGCTGACCTGTGGTCTCAGAGGCCCCTCCAGAAACAGGGCTCACCTCACTGCCCGAGTCCCTCCCTTTTCCTAACCGGACACGGAGAGACCCGGCTTTGTTAA
>TU57533
tttaaacaacgACAAAAGATAGCTACATAGCCAACTGCcttgggaaaaacaaataccttATAATAGCCCTCTATTATATAAACTCACTTGAAAAGACAAGCAGTCTCACTGATCgccaaaagaacaaaaaaagcaagTTTTTCAATCGAAAgcggtttcattttatttttatattcagtttttcagtatattttattCCAGTTGCCTCTTTAATGTAATCACTACTAAGTGTTTATAGATATATCCCActattttatgcttttattaaaatagacaTAAACAAGTGCGAACTACGTAAGGAGCAAGGAGGAATGTCATTTCAGAGTGCTGTCATTGTAGGTGCCAGACTTTGAAAAATGGGGAAAAGAAACGCACACGCCTTCTAGCGGATGCGCTCAGTCCGCCGACAGAGATGCAGTCTCCATAGCAACTGCAGTTTCCTGGGTAACCCCCGTTAATGTTGCCATGACATCTCTTTCTGTTTCCACAGTAACCTTTCCAGATGGTTCTGAAGCCTGCAAAATTGAAGGAGAGAAAACCGCTGAATAGATAAAACGCAGAATTTTAATCCCAATAGGACACTCAACTATGCCGTGGAACAAAAATAAgtgaattaaatatatcatattaccaaaataaataaaaatcacaacaaTCCTTAAAAAAACCCAACCTGATTCTTTATAATATCCCGAAATAGAGTTCAAAGGAGGTTTAAACATGGAACTCCACAAAGTGTTGATGCCATACTTCTTTAACCGAGCCACATGAAGTATAAAAAGCATAAAGGGATTGGGACACTACATTTTTTAGGATTACATTCAAATAATCCCCGATGGAGTTGGGGGAAATCATTATtagaaaaaagtaaagaaatctCATGGAGctacggacacacacacaaaagacaacCACGAACACAAAGCTTTGCCCAAATACAAGGGAGAGGAAAAGGACCGAAAACATGTGAGTGCGGGAATCCAGCGGATGCGTGCTTTACGTCGCGCCTTCACAAGGGGATGCTGTACTCCGCCGAATAGCAGAGAAACGTTCCCCTTGCCCTGCTTGTACTGTATCGGAGATCATGGACTGTTTTGCAGAGCCCTGCACTGAGCAGGCAACTATACTCACCCCCAAACTGCACCAACACATTCGAGGGCCTTGAAGGGACCAGATCACTTCGACTCTGAGCAGGTGCGCTGCCGACTcacgcgctctctctctctctcactctctgcctTCCGCGCCAGGCCCGTCAGAGCTGCTTCCCGCAGCGGAGAGGCACCGTGTGCGATCTCAACTCCTTCATCCCGAGCCGGAGAGACAAGGTGCCTTCAGCAAAGCATATTGACAGCCTTTTATTGACACTGACAAGCGTTTGGTCTCTCTCTGAGactaaatatagttttaaagacAAGGCCAAGTCGGCCCAATCCAGTGTTAAGAGAATAGTTAGTTGAACGGTGAGCGTTCTTCAACCGGACGGACCTGTTGTTACAATGCTGCTACTGTTAATGAAAAAGGCCACAAGTGCTCCACAATACCAATGTATACTCTTTTGTAGAGGAAGTCGTTTGTCAAATTTTTTGCTGCAGCACATTGTCGTCAGCGTATATGAATAGCCTACACGAGCAGCTCAAGATGCACCAGCCTGGGTTTTCGTTtgtatgttcatttttatttatttttttctatattttttatttttatttttcatttttgcactTTGGGGTAGCTCCGATGGAGAAATTTCAATGACACGGAGAGCCGGGGGTGTTTGTTGCGCTTTCTGAAAAGCGAACGGTAAACAGGTGCTGTCGATGCGGCTTGCCGCGAAGATTGCTTCTGTAATAATTAAAGACTGttctgtacaaaaaataaaagtgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013691 False 621 mRNA 0.55 8 38942775 38970174
TU57533 True 1888 lncRNA 0.42 3 38959554 38971579

Neighbor

gene id symbol gene type direction distance location
AMCG00013690 kcna2b,kcna2,LOC108438074,LOC107673029,LOC104918376 coding downstream 29 38941253 ~ 38942746 (-)
AMCG00013689 NA coding downstream 56987 38884091 ~ 38885788 (-)
AMCG00013687 NA coding downstream 90821 38845788 ~ 38851954 (-)
AMCG00013686 NA coding downstream 140575 38796395 ~ 38802200 (-)
AMCG00013684 NA coding downstream 172066 38769708 ~ 38770709 (-)
AMCG00013688 LOC107746331,LOC107673019,LOC100330283,LOC101158021,LOC104931868,LOC103360392 coding upstream 534 38972113 ~ 38973696 (-)
AMCG00013697 LOC106582726,LOC106566040 coding upstream 212409 39183988 ~ 39192405 (-)
AMCG00013696 NA coding upstream 227236 39198815 ~ 39202268 (-)
AMCG00013699 NA coding upstream 262056 39233635 ~ 39254643 (-)
AMCG00013698 NA coding upstream 283264 39254843 ~ 39262647 (-)
G46134 NA non-coding downstream 112043 38826504 ~ 38830732 (-)
G46114 NA non-coding downstream 174540 38767426 ~ 38768235 (-)
G46003 NA non-coding downstream 391628 38502342 ~ 38551147 (-)
G46011 NA non-coding downstream 399433 38541276 ~ 38543342 (-)
G45971 NA non-coding downstream 483976 38457256 ~ 38458799 (-)
G46175 NA non-coding upstream 202976 39174555 ~ 39177975 (-)
G46236 NA non-coding upstream 446912 39418491 ~ 39418739 (-)
G46238 LOC103022582,LOC106572854,LOC105023759,LOC105934746,LOC105912002 non-coding upstream 557368 39528947 ~ 39530228 (-)
G46240 NA non-coding upstream 573992 39545571 ~ 39553245 (-)
G46245 NA non-coding upstream 590518 39562097 ~ 39562296 (-)
AMCG00013685 NA other downstream 159342 38782024 ~ 38783433 (-)
AMCG00013677 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308 other downstream 241701 38697395 ~ 38701074 (-)
AMCG00013669 NA other downstream 351573 38588979 ~ 38591202 (-)
AMCG00013663 b9d2 other downstream 396740 38543850 ~ 38546035 (-)
AMCG00013661 tmem91,LOC107676753,LOC107757682,LOC107662142,LOC107758240 other downstream 458506 38478552 ~ 38484269 (-)
G46333 NA other upstream 1301812 40273391 ~ 40275098 (-)
AMCG00013730 NA other upstream 1414482 40386061 ~ 40428625 (-)
G46418 NA other upstream 1615237 40586816 ~ 40587392 (-)
G46423 NA other upstream 1632022 40603601 ~ 40608528 (-)
AMCG00013732 NA other upstream 1646764 40618343 ~ 40637228 (-)

Expression


Co-expression Network