AMCG00013701 (LOC107553398)


Basic Information

Item Value
gene id AMCG00013701
gene name LOC107553398
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39270881 ~ 39276649 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013701
ATGCCCAAGAAAGGGAACAGAAAACGGCTGAAGTTCCGGGCCGAGGATGTGTGCTCGGAGTCAGGTATCTGTGCCGGCCGTCACGGCAGCGGCGTTAGGCCGCAAACAGACCCAAGAGCGGAGGGCGGGGCCTCGATTCAGAGAGTGATTACGTGTTCTTTTACTGTGGCCGATTACGCCAATTCCGACCCAGCCATTGTGAAGTCTGGGAGGGAGGTGCTGTCGTCTGCGGTGCCTGGCAGCGGGCAGGACTGCGAGAGCAGCGACGAAGTGGACCGAGAAGGTAGCCACACTGATCTGAAGGTTTTCcggaaaaagaaaagcaagagacGCAAAGaaagcagTGAGGCAAGCGATGGAGACGAGTACCCCATTGACATCTGGCTGCTGTTGGCTTCATATATCCGCCCAGAAGACACTTGCAAATTTGCTTTGATCTGCAAGAATGCTTGGACTGTCACTTGCACTGCTGCATTTTGGACCAGGTTATACAGGAGacACTATAATTTGGATATAGATTTGCCTTTCCGCCTGCAGCCTGACTGCATTGGGAAGATGCGGTGTCTTCGCGCTTGTGTGATTCGCTCTCTCTTTCACCTGTATGAGCCTTTCAGCTCTCGCGTCTCCAAAAGCCCCTCTTTCCCAGAGTCCACTCCCACCACGCTTCTGAATTCCAAGTGCTTGCTCTTTTGGGTCAACAAGGTAGATGGGAATAGGCCAGAACCAATGTGGgaattcaatttcaaatttaTTAAGCAGccTGCCAAGTTTAAGAACGGCTGTGGAAATGGACTCCAGTTTCCCAGGCAGTACCGAGATGTTCACACTAACCCCGACGAGGACTGCTATCTGCTGCAAGTCACCACGCTCAATTTCATCTTTACCTCCGTCGCAATGGGCATGACATTATCCCTGTTCACTATAAACGTGAGTACAGACATGAGACACCACCGCGTGAGGCTGGTGTTCCAGGACTCGCCTATCCTGAGAGGCAAGAAGCCCCGAAATGAGCAGGGGGTGCAGGTGGTGTTGGACCCTGTGCACAGTGTTAGTCTCGTGGACTGGTGGCACCCCCAGTACCCCCCAGCACCGTCGGCCTAGATCTCCTACTAACATGCTCTCCTCcaacaccccccctccctccggCTCCATAAAAAGCAATTCCCAAGCCACACAATTTGAGAAGATGTTGGCAAAGATGACGCTTcttggaaacaaaacacagcattcGTAAGGATGCATACATGCCCGTTTGCTGCAAACCGTCATGGGATGAACACGGTGCTACATCGTAGTGAACTGTACACTATATGTTGTGTGATGCTGTTTGACTGCCAGATTGAAAAGGGTGGATAAATGACTGTTTCAGAAGTGTCTTCGTTTACAGCATATCTTGAAagctctttaaatgttttattcagcacTTTCCACTTGGCATAACACTTGATGACAggaaatagatatatttttacattttaattgagacCTCAATTTTTGACCAGATCCtagttttacagtttgtttttattcttttgttttgaaatagaCATATGGGAAACTGCCGAGATTATTTGCAATGGGACCAAAATCTTTaggtttttgctttttcctGCACACCTGTTCTATAGACCATTTAGTTTGTATGATCTCAATGCTTCTGAATACATCAGTCTGTATTATCATCCTTTTATTGGTAAAGTAGTCTACAATGTACAGTGAGTAACTGGAACTTCACCAAGTAATCCAAACCTGTGCACTTTCCACTGAGGGCTGCATTATGCTAATTTTTCTGTCCAGTCCCAAATGTACTGAAGACCTCACAAGCTTAATTTGACCAATCTTGTAAGAACTACAATTAAATTGTAAGAATTGTGtgtttggatttaatttctGAGGCAATTGTCAGTCCATTCCATACATGGACTATCACTGTGTTTGTATCAAAAAAAATGTAGCATGTTTGATTTGTACTTCCAATTTAAATTGCTACAGtaaagcaaatggaaaaatgtCCCATGCTCCTTTTGTTTCACATTGTAGCATTATGCAGTTTCTTCCAAAGAGcttgtttacattgtgttgtaCTGCTGTGGTCATATAAACACTAGTGTTCTGCAATGACAAATCTGTATGAAGTTCAAAACTGTcttgttaattataaaaaaatccaTAATACCATAATTTAAGCAGTGTGTGGAGAGAGAATCTAAATAGCACCTTCTCAGTCTTGACAGTTTCTGTGTGTTCTCAttgttcctgtttgtttgtcatCACCTACAGTACTTCATGAGTGAACACAAGGTGGTGGTAGTGCTCCAGTCTACATATCGACTGCCTTTAAGTCTTtatccaaaacaaatatttatggtTTAACAGATTATCGCAATCACCGTAGTttcttttggaaaatgtttattctgtttttcatttccctTCTCGTGGGAAAACCAGACCAGTTTCTGGTCTAGGAAACATTGCATTGTAAAACTAATACCCTACAACAGGGTAATAAACCTTCTGGAAG

Function

NR:

description
PREDICTED: transmembrane protein 183-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013701 True 2524 mRNA 0.44 8 39270881 39276649

Neighbor

gene id symbol gene type direction distance location
AMCG00013700 NA coding downstream 2222 39266509 ~ 39268659 (-)
AMCG00013698 NA coding downstream 8234 39254843 ~ 39262647 (-)
AMCG00013699 NA coding downstream 16238 39233635 ~ 39254643 (-)
AMCG00013696 NA coding downstream 68613 39198815 ~ 39202268 (-)
AMCG00013697 LOC106582726,LOC106566040 coding downstream 78476 39183988 ~ 39192405 (-)
AMCG00013703 myog coding upstream 131606 39408255 ~ 39411248 (-)
AMCG00013710 NA coding upstream 296375 39573024 ~ 39576044 (-)
AMCG00013709 yod1,LOC106565882 coding upstream 317408 39594057 ~ 39597610 (-)
AMCG00013714 NA coding upstream 411048 39687697 ~ 39703006 (-)
AMCG00013713 NA coding upstream 427211 39703860 ~ 39713357 (-)
G46175 NA non-coding downstream 92906 39174555 ~ 39177975 (-)
G46144 NA non-coding downstream 325820 38944813 ~ 38945061 (-)
G46134 NA non-coding downstream 440149 38826504 ~ 38830732 (-)
G46114 NA non-coding downstream 502646 38767426 ~ 38768235 (-)
G46011 NA non-coding downstream 727539 38541276 ~ 38543342 (-)
G46236 NA non-coding upstream 141842 39418491 ~ 39418739 (-)
G46238 LOC103022582,LOC106572854,LOC105023759,LOC105934746,LOC105912002 non-coding upstream 252298 39528947 ~ 39530228 (-)
G46240 NA non-coding upstream 268922 39545571 ~ 39553245 (-)
G46245 NA non-coding upstream 285448 39562097 ~ 39562296 (-)
G46263 NA non-coding upstream 345714 39622363 ~ 39627190 (-)
AMCG00013691 NA other downstream 299302 38942775 ~ 38971579 (-)
AMCG00013685 NA other downstream 487448 38782024 ~ 38783433 (-)
AMCG00013677 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308 other downstream 569807 38697395 ~ 38701074 (-)
AMCG00013669 NA other downstream 679679 38588979 ~ 38591202 (-)
AMCG00013663 b9d2 other downstream 724846 38543850 ~ 38546035 (-)
G46333 NA other upstream 996742 40273391 ~ 40275098 (-)
AMCG00013730 NA other upstream 1109412 40386061 ~ 40428625 (-)
G46418 NA other upstream 1310167 40586816 ~ 40587392 (-)
G46423 NA other upstream 1326952 40603601 ~ 40608528 (-)
AMCG00013732 NA other upstream 1341694 40618343 ~ 40637228 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G303966 NA non-coding NC_047614.1 CM018560.1 7704216 ~ 7705243 (+)