AMCG00013717


Basic Information

Item Value
gene id AMCG00013717
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39748091 ~ 39749050 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013717
ATGGATCTGTGTGTCACCATTAAAGGGGTGTCATTCCTCTTGCAAACAGGCTTGGGAATCCTGGGAAACCTCCTGGTTCTGCTGGTGTATGCCCACATTGCTTACAGTGACCACAGAATGCAGCCAGTCGATGTGATCCTGTGCCACCTCGCCTTTGCTAACCTGATGCTCCTTCTCACTCGCTGCGTCCCCCAGACCATGACTGTGTTTGGGCTGCAAGAGCTGCTGGACGACACGGGGTGTAAAGTGGTCATCTATGCCTACAGGATTGCCCGCGCCCTCTCTGTCTGCATCACCTGCATGCTCAGCGTCTTCCAGTCCATTACCATCACCCCCCCCACTTCCCGGTGGGGCCACCTCAAACTCCGGGTTCCCCAGCTCCTTGTCCCCTGTTTTGTGGCACTGTGGCTGATCAACATGGCAGTGTGTATCGCCGCCCCCTTTTTCTCTGTCGCCCCGCGAAACGGAACCATCCCCAAGTTCACCCTCAACCTCGGCTTCTGCCACGTGAATTTCCGGGACAACCTCTCGTACGTCATCAACGGAGTGGCCGTCTCGGGACGTGATTTTGCCTTCGTGGCCCTCATGCTGTGCTCCAGCGGCCACATCCTCCTGCTCCTGCACCGGCACGGCAAGCAGGTCCGAGGGATGCGCAGCTCGGGGCGCCACTCCCAAGGCAGCCCAGCCGAGACCAAGGCGGCCAAGACTGTGGTCACGCTTGTCACTCTCTACGTAGTCTTCTTCGGCATCGATAACATCATCTGGATCTACATGCTGACCATGGTGCAGGTGCCCCCCGTCATTGGAGACATGAGGGTCTTCTTCTCGTCCTGCTATGCTTCACTCAGCCCCTTCCTCTTGATGTCCTCCAACAAGAAGATCAAAAGCAGACTGAGCTGTGCTGCCACGGATCCCAATCCACCATCTCTGGACACTGAAGACTCCAAGGTCAACATCTGA

Function

GO: NA

KEGG:

id description
K04614 V1R; vomeronasal 1 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013717 True 960 mRNA 0.57 1 39748091 39749050

Neighbor

gene id symbol gene type direction distance location
AMCG00013713 NA coding downstream 34734 39703860 ~ 39713357 (-)
AMCG00013714 NA coding downstream 45085 39687697 ~ 39703006 (-)
AMCG00013709 yod1,LOC106565882 coding downstream 150481 39594057 ~ 39597610 (-)
AMCG00013710 NA coding downstream 172047 39573024 ~ 39576044 (-)
AMCG00013703 myog coding downstream 336843 39408255 ~ 39411248 (-)
AMCG00013715 NA coding upstream 12289 39761339 ~ 39834756 (-)
AMCG00013718 NA coding upstream 88296 39837346 ~ 39838308 (-)
AMCG00013716 NA coding upstream 106308 39855358 ~ 39856320 (-)
AMCG00013722 NA coding upstream 127377 39876427 ~ 39896462 (-)
AMCG00013723 NA coding upstream 151054 39900104 ~ 39905668 (-)
G46263 NA non-coding downstream 120901 39622363 ~ 39627190 (-)
G46245 NA non-coding downstream 185795 39562097 ~ 39562296 (-)
G46240 NA non-coding downstream 194846 39545571 ~ 39553245 (-)
G46238 LOC103022582,LOC106572854,LOC105023759,LOC105934746,LOC105912002 non-coding downstream 217863 39528947 ~ 39530228 (-)
G46236 NA non-coding downstream 329352 39418491 ~ 39418739 (-)
G46368 NA non-coding upstream 632500 40381550 ~ 40381998 (-)
G46370 NA non-coding upstream 636299 40385349 ~ 40385758 (-)
G46372 NA non-coding upstream 667625 40416675 ~ 40418642 (-)
G46395 NA non-coding upstream 693260 40442310 ~ 40446394 (-)
G46419 NA non-coding upstream 844098 40593148 ~ 40593420 (-)
AMCG00013691 NA other downstream 776512 38942775 ~ 38971579 (-)
AMCG00013685 NA other downstream 964658 38782024 ~ 38783433 (-)
AMCG00013677 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308 other downstream 1047017 38697395 ~ 38701074 (-)
AMCG00013669 NA other downstream 1156889 38588979 ~ 38591202 (-)
AMCG00013663 b9d2 other downstream 1202056 38543850 ~ 38546035 (-)
G46333 NA other upstream 524341 40273391 ~ 40275098 (-)
AMCG00013730 NA other upstream 637011 40386061 ~ 40428625 (-)
G46418 NA other upstream 837766 40586816 ~ 40587392 (-)
G46423 NA other upstream 854551 40603601 ~ 40608528 (-)
AMCG00013732 NA other upstream 869293 40618343 ~ 40637228 (-)

Expression


Co-expression Network