AMCG00013831 (LOC106566046,LOC106582739,LOC105908306)


Basic Information

Item Value
gene id AMCG00013831
gene name LOC106566046,LOC106582739,LOC105908306
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44186012 ~ 44202447 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013831
ATGGCCGACTTCGAGGAGCAGCTTACCGATGAGGAGAAGGTCCGTATAGCAGCCAATTTTGTCACCCACGCTCCTCCAGGAGAGTTTAACGAAGTCTTCAACGATGTACGGTTACTGCTCAACAATGACAATCTTCTCAGGGAGGGGGCAGCACATGCGTTTGCCCAGTACAACATGGATCAGTTCACCCTTGCCAAACTCGAAGGGTGCGACGACCAGGTGCTGATCACGGAGCATGGAGACCTGGGCCACGGCCGCTTCTTTGACCCGCGGAACAAGCTGTCCTTCAAGTTTGACCACTTGAGGAAAGAAGCCAGCGACCCGCAGCCCTGCGAGGGCGAGGCAGCGCTGCGGCCCTGGAGGGATGCCTGTGACAGTGCCCTGCGGGCGTACGTGAAGGAGCACTATCCCAGCGGCGTCTGCACGGTCTACGGGAAAACGATCGATGGGCAGCAAACCATTATTGCCTGTATCGAGGGCCACCAATTTCAACCCAAAAATTTCTGGAATGGCCGCTGCAGATCCGAGTGGAAGTTCAGTGTTGGACAGTCCAGCGCCCAAGTGGTCGGAGTGCTCAAGATTCAGGTGCATTACTATGAGGATGGCAACGTCCAGCTGGTCAGCCATAAGGACGTGCAGGAGACGCTGACGGTGTCTagtGAATCCCTGACTGCCAAGgagtttgttaaaataattgaaaatgcagaaaacgAGTACCAGACGGCCATCAGCGAGAACTACCAGACCATGTCCGACACCACGTTCAAAGCCTTACGCCGGCAACTGCCTGTCACCCGCACCAAGATCGACTGGAACAAGATCCTGAGCTACAAGATCGGCAAGGAGATGCAGAACGCTTAGAGCAACACGCATGAGCCCGCTTATGTTACAACTGTGtgcaaagacaaacaaaaacgacaacaacaacaacataacgtaacagtaaaaaactaaaaaaaaaaaaaaaaaaaaaaaagacgaa

Function

NR:

description
PREDICTED: F-actin-capping protein subunit alpha-1

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0030018 Z disc cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10364 CAPZA; capping protein (actin filament) muscle Z-line, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013831 True 982 mRNA 0.52 10 44186012 44202447

Neighbor

gene id symbol gene type direction distance location
AMCG00013828 NA coding downstream 8386 44160652 ~ 44177626 (-)
AMCG00013825 LOC106517667,LOC108231490,LOC103356074,LOC106582736,LOC107098533,LOC105928018 coding downstream 179379 44004877 ~ 44006633 (-)
AMCG00013822 slc16a1b,slc16a1a,LOC107591766,LOC107711946,LOC107669643,LOC107717534,LOC107679710 coding downstream 475017 43703998 ~ 43710995 (-)
AMCG00013823 NA coding downstream 485871 43694907 ~ 43700141 (-)
AMCG00013819 NA coding downstream 592546 43569566 ~ 43593466 (-)
AMCG00013830 wnt2bb,LOC107562779,LOC107717539,LOC107669677,LOC107679746,LOC107711930,LOC104932064 coding upstream 40068 44242515 ~ 44256042 (-)
AMCG00013832 NA coding upstream 89401 44291848 ~ 44316684 (-)
AMCG00013835 LOC107556298 coding upstream 468641 44671088 ~ 44677499 (-)
AMCG00013836 NA coding upstream 528410 44730857 ~ 44733745 (-)
AMCG00013842 NA coding upstream 1077329 45279776 ~ 45288602 (-)
G47082 LOC100696538,LOC103362809,LOC102199655,LOC108254710,LOC103467398,LOC102777028,LOC108265463 non-coding downstream 37081 44125766 ~ 44148931 (-)
G47055 NA non-coding downstream 62806 44116240 ~ 44123206 (-)
G47041 NA non-coding downstream 266050 43919661 ~ 43919962 (-)
G46990 NA non-coding downstream 619017 43566795 ~ 43566995 (-)
G46982 NA non-coding downstream 663130 43522328 ~ 43522882 (-)
G47096 NA non-coding upstream 19939 44222386 ~ 44223384 (-)
G47109 NA non-coding upstream 86608 44289055 ~ 44291787 (-)
G47117 NA non-coding upstream 294539 44496986 ~ 44497305 (-)
G47139 NA non-coding upstream 495780 44698227 ~ 44699767 (-)
G47153 NA non-coding upstream 607198 44809645 ~ 44809876 (-)
AMCG00013820 tmem167b other downstream 571433 43609282 ~ 43614579 (-)
G46742 NA other downstream 1484944 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 1730254 42428777 ~ 42455758 (-)
AMCG00013732 NA other downstream 3548784 40618343 ~ 40637228 (-)
G46423 NA other downstream 3577484 40603601 ~ 40608528 (-)
AMCG00013846 NA other upstream 1136412 45338859 ~ 45344015 (-)
G47261 NA other upstream 1420791 45623238 ~ 45623895 (-)
AMCG00013882 cry4,LOC108413014 other upstream 1717189 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 1759743 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 1872982 46075429 ~ 46083542 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_13748766_13759247 CAPZA1A coding CI01000340 null 13748766 ~ 13759690 (-)