AMCG00013832


Basic Information

Item Value
gene id AMCG00013832
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44291848 ~ 44316684 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013832
ATGGACAGCCTGAGCAAACCAGAGCTGCTGATGTTGTTCAGTGTGCTGGAGGGAGAGCTGGAGGCCCGGGACCTGGTGATCGAGGCGCTGAGGGCCCAACACCGGGACTCATTTATCCAGCAACGCTACGGGAAGTATGACCTCAGCGACCCATTCCTGGCGCTGCAGAGAGACGGCGAGACGGCAGCGCCCGCACATGCCCACGGGAAGAAGGAGACTCCGGTGTGCACCAACCCTCTGACAGTGCTGAAGCTGGTGATGGCTCAGTGTAAGAGGATGCAGGAGAGGATGGTGTCACAGCTGGCCGCAGCAGAGAGCCGACACCGAAAGGTAATCGCAGACTTGGAGGAAGAGAAGCGCAGGCACGCTCAGGACACGGCTGAGGGCGACGACGTCACCTACAtgctggagaaggagagagagcgCCTCCTACAGCAGCTGGACTTCGAGAAGGCGCAGGTGAAGCGGCTGGAGAAGGAGCAGAAGAAGCTCTCGGGGCAGGCAGAGGAGGACCGGGCCCAGCACAAACAGCTCTCCTCCGCCCTGGCAAAAGAGTGCAAGCGTGCCAGCAGCCGGGCAGCCGAGGAGGGCCAGCGGGTGGCGGAGCTGAGCCAGCGGCTGGAGGAGCAGCGGGGGGCGGCCCGGGGGCTGCAGGCCGAGCTGGAGGCGGAGAAGAAGCGGGCGCTACAGATGGAGGCCCGGGCAGAGAAGCAGCTGGCCGAGTTCGACACGGAGAGGGAGCAGCTGAGGGCCCGGCTGAAGAGGGAGGAGGGCCAGAGTCGGGAGCTgcaggaggaggtggagagaCTGAGGAGGGAGCTGGTGGTgctcggaggaggaggagaaggagaaggagtaggagtaggagtaggagtaggagtGTGTCCGAAGATCGTTCCCCCAGTGGAGTCAGTCTCCTGCCAGACAGATGCTGGGGAGAAACCCGTCAAAGTGTCCGCCCAGGCCAAGATGAACGGGCACCACCCTGCCAAGGACGTCGACACCGCCCCGGTGGAGAAGATCAGCCAGGAGAACGGCATTGAAAACGGGGGCCTGCACTCACCTGTGCACCCCCACCCAAGCCTGTCCCCCAGCAGCAcggcctcctcctccctcacctcgTCCCCGTGCTCCTCCCCGGTCCTGGCCAAGCGCCTGGCGGGCCTCGCCGCCACCAGCCCCAGCAGTTACCAGTCCTCCTACCAGGCAGGCATCAACCAGCGCTTCCACGCCGCCCGGCACAAGTTCCAGGCGCAGGCAGAGCACGAGCAGCAGGTGGGGGTCACCGCTGCGCCACACTCCCCCCGCGATCTGTCGCCCACCACGGCTGACCACAGCTCTGCCAAGCAGCTGGCCCGCAACACCGTCACCCAGGTGCTGTCCCGCTTCACCAGCCAGCAAGGCAGCAAGCCAGGGTCCCCCAACAACAGCTCCCCTTTTGGCACAGACTACCGCAGCCTGGCTACCCCTTCGCGCGTGGGGGACCACTCCCCCACCTCCGCTAAGCTCTCCAACCCACTGTCCCCTGGGATCAAGTCGCCTACCATCCCTAGAGCCGAGAGGGGCAACCCGCCGCCTATTCCCCCGAAGAAGCCCGGCCTGGCCCAATCCCCAGcctcccccctgccccctgGGAGAGCCAGCCATTTTCCGGAGCTGTCCGGCAGCTGCGGCCTCAACGTGACCCCCGAAACAGCCAAGGAGCTAGATCTGGTGATGTCCACTACTAGCTAACCCTGACACCAGAACCGccccccactaccaccaccaccttcCTTTGATAGCATTCCACAGCCTTTACTCATAGACTTAGTTTGCAGAaacactgtttaatttatttaatattttttatggttattatgtttttttactcCTAAAAGATGAAGTGGTAACCTTTTATATGATTACTtctcttcattattattattgttgtcttaCTGTTTGTCTTGTCATATGATTTTGTACAGCACCTAAAGGATATAAATCGTTACACTTTGGTCCATTAGTGAAGAAGCAATAATACTGACTAAAGCCAGACAGGTGAATCAAGAGAGAGTGCCCACCTGCTACATAGTTAATCAATACCCCCGTATTGGAAATGATACCCCTAACTGTTTTACATAATTCCCCACCCTGTCAACATTGTACATGGCATATCCCGCAAGATGTAACGGGTAAATTAATTGTGACGAGTACACTAAACGAGTGAGGCTGAAATTCCAAAACCCTAGGAATAAGTAGGCCTATTACTCAGAGGAATACAAGAGTATGCATCTTGACGTCCTGCTCACGGTCTCTATAATTTGCACTAGAAGTATATTTCCGCAAGTGTGAAGACTTCTGCCCCTGCCTTCCCTGACCTTAATATACCACCTTTCAACACAAGCTACAATCCCTAAAGAATTTCACTATGATAGACATAAGagagtttacaaacgagaggaggccattcgacccatcgtgctcgtttggtgtacGTTAGTAACTAAGACTATCTGAACTGGGGGAGCAGTTGCCTAGAATGGTGCAGACTGTGACTGCCATTGTGTGCCAATATGACACATCACGGTGCAGGTATACCCTATATTCATGGCAAAAGATACAGAAAATCAGTTTATAATGGCAGGTATGACTTAGTTGATGTCTTACACCATTATGTGTTACCTCAAAGCacctgaaatgtgtttaataaatgcaggACGAGGGAATTGAGCTCAAGAATGCTTTTAGGGGGTAAAAAAGCAGAGTGGAAAATGTGAACGTGTTTGATGCATTCACTATCCTGTGCTACAGGTGGGCATTAAGCATTACTGTCATTATTTCAGCCGTATTTTGTTCTGATAATGGCTTCAGATGTCAACGTTTGCTACAAATTctgtatattgtaattataaggACCAACTCACTTGACACTGTAGGTTTGAAGTACATatgtataggctatatatatagtaatagcTCAATTCACTAGTGATACACTGAATTTTTTTTGTGACAGCTGACAAAAGCAAATGATAAAGAACatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013832 True 3027 mRNA 0.54 4 44291848 44316684

Neighbor

gene id symbol gene type direction distance location
AMCG00013830 wnt2bb,LOC107562779,LOC107717539,LOC107669677,LOC107679746,LOC107711930,LOC104932064 coding downstream 35806 44242515 ~ 44256042 (-)
AMCG00013831 LOC106566046,LOC106582739,LOC105908306 coding downstream 89401 44186012 ~ 44202447 (-)
AMCG00013828 NA coding downstream 114222 44160652 ~ 44177626 (-)
AMCG00013825 LOC106517667,LOC108231490,LOC103356074,LOC106582736,LOC107098533,LOC105928018 coding downstream 285215 44004877 ~ 44006633 (-)
AMCG00013822 slc16a1b,slc16a1a,LOC107591766,LOC107711946,LOC107669643,LOC107717534,LOC107679710 coding downstream 580853 43703998 ~ 43710995 (-)
AMCG00013835 LOC107556298 coding upstream 354404 44671088 ~ 44677499 (-)
AMCG00013836 NA coding upstream 414173 44730857 ~ 44733745 (-)
AMCG00013842 NA coding upstream 963092 45279776 ~ 45288602 (-)
AMCG00013844 LOC108265696,LOC107725303,LOC107598961,LOC107734522,LOC107570980 coding upstream 978822 45295506 ~ 45314825 (-)
AMCG00013847 NA coding upstream 998488 45315172 ~ 45315701 (-)
G47109 NA non-coding downstream 61 44289055 ~ 44291787 (-)
G47096 NA non-coding downstream 68464 44222386 ~ 44223384 (-)
G47082 LOC100696538,LOC103362809,LOC102199655,LOC108254710,LOC103467398,LOC102777028,LOC108265463 non-coding downstream 142917 44125766 ~ 44148931 (-)
G47055 NA non-coding downstream 168642 44116240 ~ 44123206 (-)
G47041 NA non-coding downstream 371886 43919661 ~ 43919962 (-)
G47117 NA non-coding upstream 180302 44496986 ~ 44497305 (-)
G47139 NA non-coding upstream 381543 44698227 ~ 44699767 (-)
G47153 NA non-coding upstream 492961 44809645 ~ 44809876 (-)
G47162 NA non-coding upstream 645165 44961849 ~ 44963480 (-)
G47168 NA non-coding upstream 649326 44966010 ~ 44966928 (-)
AMCG00013820 tmem167b other downstream 677269 43609282 ~ 43614579 (-)
G46742 NA other downstream 1590780 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 1836090 42428777 ~ 42455758 (-)
AMCG00013732 NA other downstream 3654620 40618343 ~ 40637228 (-)
G46423 NA other downstream 3683320 40603601 ~ 40608528 (-)
AMCG00013846 NA other upstream 1022175 45338859 ~ 45344015 (-)
G47261 NA other upstream 1306554 45623238 ~ 45623895 (-)
AMCG00013882 cry4,LOC108413014 other upstream 1602952 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 1645506 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 1758745 46075429 ~ 46083542 (-)

Expression


Co-expression Network