AMCG00013842


Basic Information

Item Value
gene id AMCG00013842
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45279776 ~ 45288602 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013842
ATGAGGAAGCCGCGGAGGAGGGGGCGCCAGGCTGGTGGGGTGAGGGTGGGGGCAGGAGCGGCAGCGGCGGCAGGTAGAGGGGGCGGAGCCGCGGTGGGCCAACGCTCGCCCTCGCCCTACAGCCTGAAGGTGTCCCCGGCACGCGAGACGCTGACCTACGCCCAGGCGCAGAAGATGGTGGAGGTGGACCTGGAGGGGCGGCTGCACCGCATCAGCATCTTTGACCCGCTGACTGTCATCACGGAGGACGAGATGACGGCCCAGGACATCGCCGAGTGCAACAGCAACAAGGAGAACAGTGAGCAGCCCCTGTTCCCCAGCGCCAAACCCAGCCGCAAGCCGCCCGCCACCAAGGGCAAGAAGAAGGACGCGGCCAAGCattgctcctcctcctcctcttcctcctcctcctcctcttgctCACACACGGCAGGCGGCCAGCACAaccagcaccccccccaccaccaccaccagcactCCAACGCCCACCACCCGCACCATGCGCTGCCCAAGCCCACCTTCCGCGTGCTGGACTGCTTCACGCCGGCCGAGGCGCCGCCGCTGCCCACCGCCTACTACCGCTACATGGAGAAGTCGGCGGAGGAGCTGGATGCTGAGGGTGAGTACGACATGGACGAGGAGGACTTCGCCTGGCTGGAGATGGTCAACGAGAAGCGCGTGTCAGACGGCCAGACCTCGGTGTCCCCGGACGCTTTCGAGCTGCTGATGGACCGGCTGGAGAAGGAGTCCTTCCTAGAGAGCCGCAGCCAGGGCCCCTCGCAGTCGGCCATCGATGAGGACGCCTTCTGCTGCGTCTGCCTGGACGACGAGTGCCTCAACAGCAATGTCATCCTGTTCTGCGACATCTGCAATCTGGCCGTGCACCAGGAGTGCTACGGCGTGCCCTACATCCCCGAGGGCCAGTGGCTGTGCCGCTGCTGCCTGCAGTCACCCGCCCGGCCCGTGGACTGCATGCTGTGCCCCAACAAGGGCGGCGCTTTCAAACAGACCAGCGACGGGCACTGGGCGCACGTGGTCTGTGCCATCTGGATCCCGGAGGTGTGCTTCGCCAACACGGTGTTCCTGGAGCCGGTGGAGGGTGTGGAGAACATCCCTCCGGCCCGGTGGAAGCTCACCTGCTACATCTGCAAGCAGAAGGGCCGTGGCGCCTCCATCCAGTGCCACAAAGCCAACTGCTACACGGCCTTCCACGTGACCTGCGCCCAGCGCGCTGGCCTGTTCATGAAGATCGACCCGGTGCGCGAGACCAACGTCAACGGCACCACCTTCTCCGTGAAGAAGACGGCCTTCTGTGAGGCGCACTCACCCCCCGGCACCGTGCGGAAGGGCGGGCGGCCTGGGGGGGTGTGTGGCAGCGGCTCCTCACACAGCCacggggaggaggaggaggaggacgaggacgaggaggaggaagagcagcgGCAGGGGGCGGCCGGGGAGAGGGGCCGGGACAGGGGCAGGGGCAAGCACAAGCGTGGCGCCAAGAAGGGCTCCAAGCTGAAGAGGAAGGTGAGGAAGGGCATGGAGGCGGCGGCCCGGCGTGCGGCCGTGCCCATGGTCCTGGTGCCGCAGATCCCCTCGCACAGGCTGAATAAGATCTGTATCGGCGTTCCCGTGCAGCGCAAGAACCAGTTCATGCAGCGGCTGCACAACTACTGGCTGCTGAAGCGCCAGTCGAGGAACGGGGTCCCGCTGATCCGCCGGCTGCACTCGCACCTGCAGTCCCAGAGGAGCGCCGGGCAGGCGGAACCGGACGAGAAGGTGAGCGCCGTGAAGGAGGAGCTGAAGTACTGGCAGAAGCTGCGGCACGACCTGGAGAGGGCCCGGCTGCTGGTGGAGCTGATCCGCAAGAGGGAGCGGCTGAAGAGGGAGCAGCTCCAGGAGAAGGACGCCGCCCAGATTTTCGCAGAGCCCGTCAACCtcagagagGTCCCTGACTATCTGGAGTTCATCTCCCAGCCCATGGACTTCTCCACCATGCGCACCAAGCTGGAGGCCCACGGCTACCGCACACTGGCCGACTTCGAGGCCGACTTCAACCTCATGGTGGGCAACTGCCTGAAGTATAACGCCAAAGACACCGTGTTCCACCGTGCCGCCGTGCGCCTGCGGGACCTGGGCGGCGCCATCCTGCGGCACACGCAGCGCCAGGCCCAGAGCATCGGCTTCGACTGCGAGACTGGCATGCACCTCCCGGACTCGCCCAAGGGCCAGGACTATTACCGCTGCTCCTGGGAGGACGTGGACAACATCCTGGCCCCAGAGAACCGTGTGCACCTCTCTGCGGAGGACCAGCTGAAGGAGCTGCTGGACAAGCTGGACATGGTGTCCAGCATGCGCTCCAGCGGGGCCCGGACCCGGCGCGTCCGCCTGCTGCGCCGCGAGATCAACAGCATCCGCTACCGGGTGGGCCAGCAGCAGCGGCACCTGCTCAACGGGGAGCACGGCAAGGGGCCCCCCGCCGGCCCTGAGGACAGCCCCGCCGCACCGGGGGAGCCCGCCACGCCGCCCGCCACGCCGGAGAAAGACACCGCCAAGTCCACCCCTCCCCCAACCCTGGAGCCCACCGGCCCCGCCCCCTCCCCGACGGACGGCGACACCCCCCAGGACCCCCCCACGCTGCGGCCGGTGGGCGGGGAGCCGCGGACCCCCGGCCGGCCGCACAAGCGCTTGAAGTCGGACAGCGAGGCGACCGGCGCTCGGAGGCCGGGGGCAGGCGGCCCCGGGAGTCCGGGGGGCGTCCAGCGGCTGCTGAGCGATGGGGGGCTGAACGGGCTCTCGCCGGGGGCGGCCCCTGAGACCCCCAGCCCCTCGGCCCCCGGCGTGGGCCGCCGCACCTCCGTCCTCTTCAAGAAAGCCAAGAATGGCGCCAAGATCCACAAGGGAGCCGACAGCCCCCTGCGGAACGGCGGGGAGGAGACGCACAgcacccccctctctcctcctcctcctcctcctcccatccCCGCCCCTACCGTGCCCTCGCCCCCCCGTGCCTCGCCGGACCGCCCCCCCCGCCGACGGAGACACAGCGTCAGCTCGGACAGCGAGGGGGAGAAATCTCCGCCCCCTGTCACTGAAGCAGGTGAGGACTTTGACCGGGCCGTGTCCCGGTCCTGCCCCCGCTGGCCTCTGCGCCTCCGAGGGGGGTCACAGATAAGAGCAACCTGGGACTCCAGACTTGCGTGGCTTGTAACGTGGGGTCTCTTGGTGTATGATGGAGGGCTGACGAACGGCTTCGGGAAACACGCGGAGAGCGGCTCGGATTCAGAGTGCGGCTCCCCCCCGGCTGGAGCCACGCCCTTCGTCAAGGACGTCTGCATGTCTCCACCCAAACGCAGCCGTGGAAAGCCAGCACTGTCCCGGGTCCCCTTCCTGGACGGCGTGAACGGGGACACGGAGTACGACGGCTCAGGCAGGAGCATCCTGATGTCGTATGAGAACAGCGCTGACCTGGAGCCGCTGGACCTGGTGTGGGCGAAGTGCCGGGGATACCCCTCCTACCCGGCGCTGaTCATTGACCCGGACATGCCAAGGGAAGGCCTGCTGCACAACGGCGTCCCAATCCCCGTCCCGCCCCTCGACGTCCTGCGGCTGGGCGCCCAGAGGCAGGATGAGGCCGGCGAGAAGCTCTTCCTCGTCCTCTTCTTCGACAACAAGAGGACATGGCAGTGGCTCCCGCGCGACAAGGTGCTGCCCTTGGGGGTGGATGACACGGTGGACAAGCTGCGCATGATGGAGGGGCGGAAGACGAGCATCCGCAAGTCCGTCCAGGTGGCCTACGACCGCGCCATGATCCACCTCAGCCGGGTGAGGGGAGACCACGGCTTCGTCACCTCCAACTACCTGTAGACAGGccgggggagggagagggacggACACACCGTGGATTCATCCTTCAACCTCACaatggaggaagagagggagagaaagagagggaagagagactGCTACCTACAGATTATGGGAGAAAGGAGGCCACTGGGTGAGAGGCGGAGCGACGGAAAGACCCCCTTCTCTCCGGGGGTCCGCAGAGTCCCCGCTCCCCGAGAGGCACCGGGGTGTCCGGCCAACAACCAAAACTCCAGACGAAAGAAACCGTTTCACAAAGGCGATGACAACAGAAATCCACgatcgtttttttttctctcgtttGTTTTcccagattcattttttttttttttcatatttataaaaaaaaagaagaaaaaaaagttataaaaacagaaaggatCACTGCCATTTTCGTACGAtagctttttactttttaatactTTACAAAACCACTTCTTGTACATTGGAAacgcacacacgcatatatCTATATTTCCTCTGTGGAGGAATATATATATCGATGTATATCATACTCTTCTATGAtttcgttttatttgtttgcatttgtattgaaTTAACCGAGGGCACTACGGGGAAGAAAAATGATGTAAATACTTGTAAATTACCGTTATAAATTATTGGCCGGCTTCAAAGTTCATTTAGCTTCTCTGTGGTGTTAAtggttatatatacatatatatatatatatataaatatatatattttcttttttttttttttaatacacaaaatgtaatttatttaaggaaagcaaaaaaaatattgtttgacAATTGAAAGTAAATAGATCAGtaatttaacatgaaataaaaagataaataaaaagaacagtGGACTTTGTGACCCATGTATAACGTTGTAATAATATCgagattttaaaacacttttactacattttatgattttctttgtattgtccCCGAGGTGTTGCCCTAGGGCCGGAGTATTGCTGTAAGTCCGCTGCTGAAGCACagaatgttgtatttattgtagaaagtgtttatttgctttctaGATCTGTTTATAAGATGCCTCTGAGAGAGATTCTACGCTTGTACAAATTGCAGATTTTACCCACTATAACCTGACTGTCTGAATCTATATTTTCTCTCTTG

Function

GO: NA

KEGG:

id description
K11350 BRPF3; bromodomain and PHD finger-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013842 True 4991 mRNA 0.61 12 45279776 45288602

Neighbor

gene id symbol gene type direction distance location
AMCG00013836 NA coding downstream 546031 44730857 ~ 44733745 (-)
AMCG00013835 LOC107556298 coding downstream 602277 44671088 ~ 44677499 (-)
AMCG00013832 NA coding downstream 963092 44291848 ~ 44316684 (-)
AMCG00013830 wnt2bb,LOC107562779,LOC107717539,LOC107669677,LOC107679746,LOC107711930,LOC104932064 coding downstream 1023734 44242515 ~ 44256042 (-)
AMCG00013831 LOC106566046,LOC106582739,LOC105908306 coding downstream 1077329 44186012 ~ 44202447 (-)
AMCG00013844 LOC108265696,LOC107725303,LOC107598961,LOC107734522,LOC107570980 coding upstream 6904 45295506 ~ 45314825 (-)
AMCG00013847 NA coding upstream 26570 45315172 ~ 45315701 (-)
AMCG00013845 LOC103370234,LOC108436315,LOC103028137,LOC108246862,LOC104939458,LOC106513331,LOC108254806 coding upstream 27845 45316447 ~ 45329179 (-)
AMCG00013843 NA coding upstream 70585 45359187 ~ 45373711 (-)
AMCG00013856 NA coding upstream 316224 45604826 ~ 45615255 (-)
G47185 NA non-coding downstream 11380 45268054 ~ 45268396 (-)
G47180 NA non-coding downstream 174889 45104223 ~ 45104887 (-)
G47168 NA non-coding downstream 312848 44966010 ~ 44966928 (-)
G47162 NA non-coding downstream 316296 44961849 ~ 44963480 (-)
G47153 NA non-coding downstream 469900 44809645 ~ 44809876 (-)
G47259 NA non-coding upstream 333913 45622515 ~ 45622755 (-)
G47358 NA non-coding upstream 537121 45825723 ~ 45826654 (-)
G47359 NA non-coding upstream 539363 45827965 ~ 45828251 (-)
G47365 NA non-coding upstream 557247 45845849 ~ 45854800 (-)
G47391 NA non-coding upstream 632504 45921106 ~ 45922914 (-)
AMCG00013820 tmem167b other downstream 1665197 43609282 ~ 43614579 (-)
G46742 NA other downstream 2578708 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 2824018 42428777 ~ 42455758 (-)
AMCG00013732 NA other downstream 4642548 40618343 ~ 40637228 (-)
G46423 NA other downstream 4671248 40603601 ~ 40608528 (-)
AMCG00013846 NA other upstream 50257 45338859 ~ 45344015 (-)
G47261 NA other upstream 334636 45623238 ~ 45623895 (-)
AMCG00013882 cry4,LOC108413014 other upstream 631034 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 673588 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 786827 46075429 ~ 46083542 (-)

Expression


Co-expression Network