AMCG00013843


Basic Information

Item Value
gene id AMCG00013843
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45359187 ~ 45373711 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013843
ATGGCGTTTCATGAGCGCAGTGAAGGTGGCTCGAATGCCGAGCTGATACGGATCTCGACGGTTTCCTGCTGCTGCGATCGGTCGCCAATGCCGGAGCTCGACCAATCCGGCTCTGGGAAGGTCATCCGAGTCTATTGTTTGTTAAGTGCCGGGCTGCGATCAGTCGAATCCCGATCGATGGGTGCCCTGGCGGAAATTCTGCACTCCATCTCCACGCTAAATCCCTCTCTGACCCATATATATAGAGCGCAGCAGCGCCGGATGGGTGACAAGACTTCAAAGCCGGAGCCTCATCCCAGGGGTTCCTCCCAGGCACCCGAGTCCCAGCTCCCAGAACAAGAGGAGGAGATCCTGGGCTCTGACGACGAGGAGCAGGAAGACCCCAACGACTACTGCAAGGGTGGCTATCATCATGTTAAGATCGGGGACCTGTTCAACGGCCGGTACCACGTCATTCGGAAGCTGGGCTGGGGCCACTTCTCCACCGTGTGGCTGGCCTGGGACATCCAGGGCAAGCGCTTCGTGGCCATGAAGGTGGTGAAGAGCGCCGAGCACTACACGGAGACGGCGCTGGACGAGATCAAGCTGCTGAGATCGGTCAGAAACACGGACCCCAACGACCCCAACCGGGAGATGGTCGTCCAGCTGCTCGACGACTTCAAGATCTCTGGCGTGAACGGGACTCACGTGTGCATGGTATTCGAGGTCCTGGGACACCATCTGCTCAAGTGGATCATCAAGTCCAACTACCAAGGGCTGCCGCTGCCCTGCGTCAAGAGCATCATCCGACAGGTCCTTCAGGGGCTGGACTACTTGCACACCAAGTGTAAGATCATCCACACAGACATCAAGCCCGAGAACATCCTGATGTGTGTGAATGAGCCGTACGTGCGTCGCCTGGCCGCCGAGGCCACCGAGTGGCAGAAGGCCGGGGCACCCCCCCCCTCCGGCTCTGCAGTCAGCACCGCGCCACAACCCAAGCCGacgGTGAAGATGTccaagaacaagaagaagaagctgaagaagaagcagaagaggCAGGCGGAGCTGCTGGAGAGACGCATcctggagctggaggagctggagcgcGGCCCTGAGGGTGgcgaggaggacgaggaggacgaCGGCCCGGAGCCGGACACCCCCGTGGCCCCGCCCTGCGTCCCGCTCCAGCCGGCCACGCTGCAGGACGTGGCGGACGAGCAGAGTGCCGAGGGCGGCGGGCAGCGGGAGCCGGAGGGGCCGGCGGAGGAGGTGGCGCGCGGCGAGGCAAACTGTAACGGGCACAATGGCGGCGAGCGTCCCTCCCccgaggaggaagaggacgaggacgaggaagaggaggacgagAGGAGAACCACCAGGAAAGACGACGATGACCACCACAACGCCAACGACTGTGTGCCGGAGGACCTGTACCCGCCGAGCCAGGGCCTGCTGCTCAACCCCGCCTACCAGACGTGCAACGGCACAGTGCAGGGCGACTCGCCAACGGGCAGTGACGGTAATGGACCCTTCCTTAGTGGCATGCTTCAGTCCATGTCCTGTAGCTTGCAGTCCGAGGGGCTCGACGCCAAGGAGGACGAGGACGGCATCGGGCGGGCGCAGGACGGCTCCGACATCCCGACGGGCCTCGAGGGAGACATGGCTAAGCTGGCCGCTGGAAATCTGCTGATCAACCCTTTAGAGCCGCTGAACGCCGACAAGATCAAAGTGAAGATCGCAGACCTGGGGAACGCCTGCTGGGTTCACAAGCACTTCACAGAAGACATCCAGACCAGACAGTACCGGTCGCTGGAGGTGCTGATCGGGGCCGGGTACAGCACGCCCGCCGACATCTGGAGTACAGCATGCATGGCGTTTGAACTGGCGACTGGGGATTACTTGTTTGAGCCTCATTCTGGGGAGGATTACTCGAGAGATGAAGacCACCTGGCCCTTATTATAGAGCTTATGGGCAAAGCCCCACGACACCTTGCTTTGTGTGGGAAATACTCACAGGAATACTTCACCCGCAGAGATCACATTGCGTTGATCATTGAATTGCTGGGGAAAGTGCCTCGCAAGCTCATTACAGCCGGCAAGTACTCCAAGGAGTTTTTCACCAAGAAAGGAGACCTGAGGCACATCACCAAGCTGAAGCCCTGGGGGCTGCTGGAGGTGCTGGTGGAGAAGTACGAGTGGCAGCGCGACGAGGCCCAGACCTTCGCCGACTTCCTGCTGCCCATGCTGGAGCTCGTCCCGGAGAAGAGGGCCACGGCGGCCGAGTGTCTGCGCCATGCCTGGACCGCCCCCTAGTGGACCCGCCCGGCCGGCCGACCCACCATCCATCCGCCTGCCAGTCTGCCCACCctatcctcctcctccttctcctctctctccttcctcttcctcctcctccctcagaCCAGGCAACCCTGCGCGGCTCGCTcgcaaaaacacaaactgcgTACCTGCTCCCACCCAACGACCCGCCGACTCGGCCAGCTGGCGACGCCATTCCAGTGTGAAGCTCGATCGCGGCGCCCCCCCGCGAGGAAGAGCGGTCCAATCTAGCagattcaatatttatttcctgtttgtttgttttgtgtctgtttgttttgttacttacTGGATATTACTTGAGTATCTGAGCTGTCCGTCTTCCCTCTCCCTGTTCAAGTCTCTTCTGTAGCCGCGGACCGGGGGCTTCGCGCCTCTTGATGGGGGGGCGTCCGTGTTCTCTGGGACACAAGTTATTCCAAGTCCCCGGTGAAACCTTCCactttctctctgtctatcggtctctctttctcttgatCCCCTTGTCATATCAGTTGCTCCCAAGGACAagatttgcatttcattaaataaaacccAGTAATTATTGCTGCTGAGCTATTCGAGGTATTTAAGAATAGTAATCGTATCTGTGAGTGTGGCAAGaggtatattttgtatttcgtGGTTCCCCGaattattttctactttttttttgcagctgtACTGAAGTTTGataatcaaattacttttggGTCTGATCGCTTCACATCGGCAGCAGTAATTCCTGGAGtaggaataaaatgttttttattttttctttctattcaaAATGAATTGTAGAGCCAGATCTAATCAAGTCGCCTAAGACACTGTTAATGTTCGGATACCTACTACTTTGTGCCTCTCTGCAAGCAAGATGTCCGTGGAATTTCAGAAGCCTGGGGAGTTCTATATTTGATCCTTCAGAATGCTGACCCTTGACCCCGGGCTCTTCTGCATTCCGATTCCCAGACCTCCAGGAGGGATCATGAGAGTCCATGCgttcagtgtattttatttttattttgtatttggcaGTACATAGGCATCTACTAAAGCATCACATTAAAGTCTGTCAAGatatttcatctttaattatatatgtgtatgtatatattttagtttttctgtcttGCCTGGGTGCGAGTATAAAATCTTTTGAACTTCCCCCCCCGCCACAGCGATGGAAAGAAAGCGTCCGTCTCTGACCGGCGCCGGCCAGAAACGTGGAAGCGAAGGAGGCGAATTTGAAACAGAAGATTGagagatatacatatataaatatatatatatatactcgtACCAAAGAGTTGGCCTTGTTCTGTATATTACAGCCatgtacagtttaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K15409 SRPK1; serine/threonine-protein kinase SRPK1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013843 True 3675 mRNA 0.55 18 45359187 45373711

Neighbor

gene id symbol gene type direction distance location
AMCG00013845 LOC103370234,LOC108436315,LOC103028137,LOC108246862,LOC104939458,LOC106513331,LOC108254806 coding downstream 30008 45316447 ~ 45329179 (-)
AMCG00013847 NA coding downstream 43486 45315172 ~ 45315701 (-)
AMCG00013844 LOC108265696,LOC107725303,LOC107598961,LOC107734522,LOC107570980 coding downstream 44362 45295506 ~ 45314825 (-)
AMCG00013842 NA coding downstream 70585 45279776 ~ 45288602 (-)
AMCG00013836 NA coding downstream 625442 44730857 ~ 44733745 (-)
AMCG00013856 NA coding upstream 231115 45604826 ~ 45615255 (-)
AMCG00013859 NA coding upstream 242424 45616135 ~ 45621865 (-)
AMCG00013861 NA coding upstream 263217 45636928 ~ 45638791 (-)
AMCG00013857 LOC107698281 coding upstream 266119 45639830 ~ 45647135 (-)
AMCG00013858 NA coding upstream 291169 45664880 ~ 45668281 (-)
G47185 NA non-coding downstream 90791 45268054 ~ 45268396 (-)
G47180 NA non-coding downstream 254300 45104223 ~ 45104887 (-)
G47168 NA non-coding downstream 392259 44966010 ~ 44966928 (-)
G47162 NA non-coding downstream 395707 44961849 ~ 44963480 (-)
G47153 NA non-coding downstream 549311 44809645 ~ 44809876 (-)
G47259 NA non-coding upstream 248804 45622515 ~ 45622755 (-)
G47358 NA non-coding upstream 452012 45825723 ~ 45826654 (-)
G47359 NA non-coding upstream 454254 45827965 ~ 45828251 (-)
G47365 NA non-coding upstream 472138 45845849 ~ 45854800 (-)
G47391 NA non-coding upstream 547395 45921106 ~ 45922914 (-)
AMCG00013846 NA other downstream 15172 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 1744608 43609282 ~ 43614579 (-)
G46742 NA other downstream 2658119 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 2903429 42428777 ~ 42455758 (-)
AMCG00013732 NA other downstream 4721959 40618343 ~ 40637228 (-)
G47261 NA other upstream 249527 45623238 ~ 45623895 (-)
AMCG00013882 cry4,LOC108413014 other upstream 545925 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 588479 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 701718 46075429 ~ 46083542 (-)
G47501 NA other upstream 786828 46160539 ~ 46163487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024355 CABZ01113818.1 coding NC_007136.7 CM002909.2 222921 ~ 225964 (-)
grasscarp (Ctenopharyngodon idella) CI01000256_00042139_00049433 NA coding CI01000256 null 41383 ~ 50689 (+)