AMCG00013857 (LOC107698281)


Basic Information

Item Value
gene id AMCG00013857
gene name LOC107698281
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45639830 ~ 45647135 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013857
GGGGGGTCTAAGGTCCGTCTCAGTTGTTACTCAATAGGTGTGTCTGCCTGGAACCAGTGACGTCACCGACATACCTGCGTTTCACAGAAAAGGGGAGGATAAattgggagaggaaaaaaaaacaaaattcgTAAACAGAAACTCTGGATTTCCTTGAAACCGGTGTGAGGAGAGATATTCGAGTTCAATAGGAGATTGACTGTTTTTGTGGTTGGAGTTGTAAGGAAAAGGCCACCAAGAGATCGGCGAGGAAGGACTTGTTTAGGAGGCGGCGGCCCAACTTTTTACCACTGAGAAACTTCCTGGTCAGCAGTGACTGCAGGCTATGGCCGTGCACCCCAGGCGAGTGCGGCTCAAGCCCTGGCTGGTGTCCCAGGTGGACAGCGGTCTGTACCCGGGCCTGGTGTGGCTGGACAGGGAGGTCAAGCGCTTCCAGATCCCGTGGAAACATGCCACCCGCCACTCGCCCCAGCACGAGGAGGAGAACACCATCTTTAAGGCCTGGGCCGTGGAGACGGGGAAGTTCCAGGAGGGGGTGGACGAGCCCGACCCTGCCAAGTGGAAAGCCCAGCTGCGCTGCGCCCTCAACAAGAGCCGGGAGTTCAATCTGATCTACGACGGCACCAAGGAGGTTCCCATGAACCCGCTAAAGATCTACGATGTGTGTGACATCCCCCAGCCGCTCAGCAACCCAGGATCCACGGGCTCTGTTCCCTGGGAGGAGAATGATGGCGAGccggaggaagaggaggaggagtcgCTGGAGCCCAGTCCGTACCCACAGATTAATGGCATTGgaTCGGTGTCTCCTATCCAGCCGGCCAGCTGCCCCTCCGTGGAAGTGTGGCCGAAGGAGGAGGTCATCGACATCGAGATGCACCCGTCCCCCCTGCCAGAAACCATGTTTACATCCCCAGAGATGTGGATCAGCTCCCTGCCAATGACTGACCTGGAGGTGCAGTTCCAGTACCGTGGTAAGGAGGTGTGTCCACCCCTGACGGTCAGCAATCCCCAGGGCTGTCGGCTGTTCTACGGGGACCTGGGCCCCATGGTCAACCAGGAGGAGCTGTTCGGGCCCATCAGCCTGGAGCAGGTGCGCTTCCCCTCCACGGAGAACATCAGCAACGAGAAGCAACGGCTCTTCACCAACCGGCTGCTGGACGTCATGGACCGTGGGCTGATCCTGGAGGTCAGCGGCCACGACATCTACGCTGTGCGCCTGTGCCAGTGCAAGGTGTACTGGTCGGGCCCCTGCGCCCCCAACCCCACGGGCGCCAACCTCATCGAGCGGCAGAGGAAGGTCAAGCTCTTCTGCCTGGAGACCTTCCTCAGTGGAGTGATTGCCCACCAGAAAGGTCAGACCATGGACAGACCTCCCCAGTTCGAGATCCATCTATGCTTTGGGGAGGAGTGGCCGGATGGCAGGCCCAGGGAGAGGAAGCTCATCATGGTGCAGGTGATTCCCGTGGTGGCCCGCATGATCTACGAGATGTTCTCCGGCGACTTCACGCGCTCCTTCGACAGCGGCAGTGTGCGCCTGCAGATCTCTACGCCTGACATCAAGGACAACATCGTGGCGCACCTGAAGCAGCTGTACCGCCTCCTACAAACACACCAGCCCCACGACGGTTGGCTGCCCCCTCAGGCCAACGTGCACCTGTCCCAGGCCCTGCACGCACAGTAGCGCCCTCACTGACCCACGAACTGACAGTTCCCCTTCCGCCAATGAGCAAttccccaacacacacacacacacagacaaaacaggCTTAAACCAGTGACGTCCAGGTGTAGAGgtgagggacagacagacagactgacggAGGGGAAGAGCAGATTGATGAAAAATCTGAGTGGTCATAACCAACCACAGTCGTATACGGGAGAGCactgatacatacatacatacatacatacatgcatacatgcattcATGTAGCTCGGTTAGAccgacacagagacagacatgcAGCTGGATTTTGGGCTACTAACTCTAGGCACAAATCCAACAATCCGGAGAATCGCACACACATCAGACTCTCGCACctggatgtttttaaaatacttttaaatagttACCAACCTTTCAGTTTCCCTCAAATGCTTTAGAACTcgagtgtttttaaattataaccgTTGTTTTCCCCTCTTGGGGCGATTGATGTATGTCCAGAGAATGTATAGTGAATTTGTTGCTTAAATTTCTCTTTTGATACAACAATATGAAGTCCTTTCTTTTATATCATTTTCTGCAACGTATTTTTTTTGTGAGATGTAGCAAAACATGTGGCTGTACCCCTTGAGCAGAGGACGGAGTCGGGTTTATAGTGGGCAGGACATGGTGTTGAACCAAGagatgtgattttattttattttttgtaatcccAAAGTATGTACTGTACCTGATTGTTTTTTATCATGAGACAGTCTCTGTATGACTACAATTGAtgataataatttgtattattattgtagtttttgttaTGGTGATAAATCCTGCCAATGTACATTATGGGCCTGGTTTTCCAGGGTTGGTAAACATACTAATAAGTGAGATCCACAGTTTGAATaaagtttatttacttatggGGCCTCTTATCAAGCATTTTGAGTGACATGGATGTTACGCTAACGCTAATAatcatgcatacacacatactgactGTAGTCATTTGCAAATTCTTTACTTTGAAAAATCAGGCCCTATATAACCAAATCCATTTTGTCAACAGACAAGTACAAAAAGGCAGCTGTTTGGTGTATTTGAAAGGGTGTCGACCCACTGTTACCCTCAGTGACTTCTGCAATGCAACCATGCTATGGTTTAGGGGTCTTCACGATTGGCTGTTCCAGTtgatcccagaggtgttctgaGAGATTGAGGTCCAGACTCTGAATAGGCCATGGAATGGGTTCAGTGCTATCCCTCTCGAACACCTGGCTTTTGCAGAGCACAGTCTGAGGTGTGATCCACTAGCACATGTTATGtgataacacatttgttttggccCCCAACTATTTCTAGGTGTAATTTCTGCTGTAGTGGAGTAGGTGGTGTTCATGATATTCGATAATGACATTGTGAGTTCAATTTGTGGACTCTTGTACATTGGCCAGGTATCTTATAATGTGGCGCTCGCTGTGTTTCTCTGGGGATTGATTATGTGTTCTATTATATTCTGTTATTCTATTATATTATAGCCTGTTGAGTAAACCTTTTTGTAAAGATAAGAGATCTCTTCttctattaataaataatattttacctA

Function

NR:

description
PREDICTED: interferon regulatory factor 6-like

GO:

id name namespace
GO:0060429 epithelium development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process

KEGG:

id description
K10154 IRF6; interferon regulatory factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013857 True 3269 mRNA 0.50 8 45639830 45647135

Neighbor

gene id symbol gene type direction distance location
AMCG00013861 NA coding downstream 1039 45636928 ~ 45638791 (-)
AMCG00013859 NA coding downstream 17965 45616135 ~ 45621865 (-)
AMCG00013856 NA coding downstream 24575 45604826 ~ 45615255 (-)
AMCG00013843 NA coding downstream 266119 45359187 ~ 45373711 (-)
AMCG00013845 LOC103370234,LOC108436315,LOC103028137,LOC108246862,LOC104939458,LOC106513331,LOC108254806 coding downstream 310651 45316447 ~ 45329179 (-)
AMCG00013858 NA coding upstream 17745 45664880 ~ 45668281 (-)
AMCG00013860 NA coding upstream 28121 45675256 ~ 45682090 (-)
AMCG00013864 NA coding upstream 48500 45695635 ~ 45702773 (-)
AMCG00013867 NA coding upstream 64956 45712091 ~ 45712579 (-)
AMCG00013866 NA coding upstream 96644 45743779 ~ 45752588 (-)
G47259 NA non-coding downstream 17075 45622515 ~ 45622755 (-)
G47185 NA non-coding downstream 371434 45268054 ~ 45268396 (-)
G47180 NA non-coding downstream 534943 45104223 ~ 45104887 (-)
G47168 NA non-coding downstream 672902 44966010 ~ 44966928 (-)
G47162 NA non-coding downstream 676350 44961849 ~ 44963480 (-)
G47358 NA non-coding upstream 178588 45825723 ~ 45826654 (-)
G47359 NA non-coding upstream 180830 45827965 ~ 45828251 (-)
G47365 NA non-coding upstream 198714 45845849 ~ 45854800 (-)
G47391 NA non-coding upstream 273971 45921106 ~ 45922914 (-)
G47538 NA non-coding upstream 584190 46231325 ~ 46238514 (-)
G47261 NA other downstream 15935 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 295815 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2025251 43609282 ~ 43614579 (-)
G46742 NA other downstream 2938762 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 3184072 42428777 ~ 42455758 (-)
AMCG00013882 cry4,LOC108413014 other upstream 272501 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 315055 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 428294 46075429 ~ 46083542 (-)
G47501 NA other upstream 513404 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 652026 46299161 ~ 46311118 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019936 irf6 coding NC_007133.7 CM002906.2 1170294 ~ 1182165 (+)
grasscarp (Ctenopharyngodon idella) CI01000185_00015550_00020227 IRF6 coding CI01000185 null 15126 ~ 20227 (-)