AMCG00013859


Basic Information

Item Value
gene id AMCG00013859
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45616135 ~ 45621865 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013859
TCACTCTCGCGGTACTTGGTTCTTCGCTCTGCGCCATCTTTGTCCCTGTGCGCTGCAGAAGGGCACTGAGGCCGAGAGAGGAGGCACGGAGACCTGGGTGGGAAATAAGCAGACCCCGGCCTTTGCAAGAAACTAACACACAGCGAGGGACTCAACATGTTGTCGAGACTGGTGCTGGTATCGGAAAGGTCTGTGTTCCCTCTGAAAGGTCTCTGTCTTCCCTCCCTCCACAGTCTGTTGCAGGTGCCCAGGTCCTTCCACACGGCCCCCCGGTGTCTGGCCCCGGTGCCGCCCCTGCCGGAGAAAGGAGGCAAAGTGCGCCATGGCCTGGTGCCGGAGGAGTTCTTCCAGTTTCTGTACCCCAAGACCGGGGTCACAGGGCCCTACATGCTGGGCACGGGCCTCCTGCTCTACCTGCTGTCTAAGGAGGTCTACATCGTGAACCACGAGACCATCGCCGCAGCCACCATCGGTGTCGTCATCCTCTACGGCATCAAGAACTTCGGCCCCAAAGTTGCAGAATTCGCTGACAAGCTGAATGAGGAGAAGGTGGCCAAGGCGCAGGAGGTCAAGGACCTGGCTCTCAACAGCCTGCAGCAGGCCAtcgaggaggagaggaaggagcAGTGGAGGGCCGAGGGCCGGCAGATGCTCTTCGACGCCAAGAGGAACAACGTGGCGATGCTGCTGGAGACCAACTACAGGGAGCGGCTGCACATGGTCACCAACGAGGTGAAGAAGCGCCTGGACTACCAGGTGGCCATGCAGCACCTGCAGCGGCGCCTGGCGCAGGAGCACATGGTCAGCTGGGTGGAGAAGAGCGTGGTCAAGAGCATCACCCCCCAGCAGGAGAAGGAGAGCATCGCCAAGTGCATCACAGACCTCAAAGTGCTGGCCAAGAACATGCAGGCCAGAGCCACTGTCTGATGAAGCGCCTCGCTGTGGCCCCAGATGTCCCCCACCGTCAGacacccccccgccccgctTGTGTGTCTGCGCCGATATCCgtgtttcattataaataaactatttcctCTTATCGGCTGTTTTATTTCTCATCatgttatatatagagagaggaatctgcgttttattttcttcacagaaCAAACTGCAGCGCGGACTGGAGCAGATTCATCCGTCTGGCGAACTTCCTGACACAGTGttcatatttcataatttcGGCCAgtcttaattaaacacattggCTCGGAACATCGTTGATAATCGCAGGACTGTGAACTCTGTGTTGGCAATACGAAGGAGGAAATGGTTCCCAGTCTGTCATATGTACGAAGGCTGTGTATTTTGCCATTAAATATGACATAATATTGGATTTACTGGTATGTGTTTCTTGCCACTTCCTGCAAGGCATTGTGGGTGA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG:

id description
K02127 ATPeF0B, ATP5F1, ATP4; F-type H+-transporting ATPase subunit b

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013859 True 1384 mRNA 0.55 6 45616135 45621865

Neighbor

gene id symbol gene type direction distance location
AMCG00013856 NA coding downstream 880 45604826 ~ 45615255 (-)
AMCG00013843 NA coding downstream 242424 45359187 ~ 45373711 (-)
AMCG00013845 LOC103370234,LOC108436315,LOC103028137,LOC108246862,LOC104939458,LOC106513331,LOC108254806 coding downstream 286956 45316447 ~ 45329179 (-)
AMCG00013847 NA coding downstream 300434 45315172 ~ 45315701 (-)
AMCG00013844 LOC108265696,LOC107725303,LOC107598961,LOC107734522,LOC107570980 coding downstream 301310 45295506 ~ 45314825 (-)
AMCG00013861 NA coding upstream 15063 45636928 ~ 45638791 (-)
AMCG00013857 LOC107698281 coding upstream 17965 45639830 ~ 45647135 (-)
AMCG00013858 NA coding upstream 43015 45664880 ~ 45668281 (-)
AMCG00013860 NA coding upstream 53391 45675256 ~ 45682090 (-)
AMCG00013864 NA coding upstream 73770 45695635 ~ 45702773 (-)
G47185 NA non-coding downstream 347739 45268054 ~ 45268396 (-)
G47180 NA non-coding downstream 511248 45104223 ~ 45104887 (-)
G47168 NA non-coding downstream 649207 44966010 ~ 44966928 (-)
G47162 NA non-coding downstream 652655 44961849 ~ 44963480 (-)
G47153 NA non-coding downstream 806259 44809645 ~ 44809876 (-)
G47259 NA non-coding upstream 650 45622515 ~ 45622755 (-)
G47358 NA non-coding upstream 203858 45825723 ~ 45826654 (-)
G47359 NA non-coding upstream 206100 45827965 ~ 45828251 (-)
G47365 NA non-coding upstream 223984 45845849 ~ 45854800 (-)
G47391 NA non-coding upstream 299241 45921106 ~ 45922914 (-)
AMCG00013846 NA other downstream 272120 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2001556 43609282 ~ 43614579 (-)
G46742 NA other downstream 2915067 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 3160377 42428777 ~ 42455758 (-)
AMCG00013732 NA other downstream 4978907 40618343 ~ 40637228 (-)
G47261 NA other upstream 1373 45623238 ~ 45623895 (-)
AMCG00013882 cry4,LOC108413014 other upstream 297771 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 340325 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 453564 46075429 ~ 46083542 (-)
G47501 NA other upstream 538674 46160539 ~ 46163487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location