AMCG00013882 (cry4,LOC108413014)


Basic Information

Item Value
gene id AMCG00013882
gene name cry4,LOC108413014
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45919636 ~ 45928309 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013882
CTTGCACAGTCATTGAACTATATTCAGCAACAAAAGTGTCAATTACAACTGAAACTGCTAATTGGGTACAGATGATGTAGTGTTGTTTTACCTCTACAGGGATGGGTTCGATGGTGACTTTAGTTTGACTTGcaggagaaacacacacacacacacacactttctctcactctctctctctctcacacacacacactctctcacatacacacacacgcactttctctcactctgtctcactctctctcacacacacactctctctctctcacagacacgcacacacacacacacacacacatacacacatgcataaatcacaaaatcaatTTTCCAGTTTTACCATTTATTGGCATTACCTTCCCTTAAGCTAACTTGGTTATTTTGCTTTGGATTGCGAGCTTATGGTCTGTGAAATGGCAGCTTGCaagctccctccccctccccccccagccccacGTGGGAGTTTTACCTCTTCGCTTGGTCTCCTGTTGCTTTCAAACATCCAGGTTTTATCCCCTGCCGGAATTAGTATAAGACGATCACAGTGTCTTGCATACTGACCTACCAGCCCTCCTGCCAGTGTGAATCCGCAGAGCTGTCCTGGTCTGACTAAGCAGAGCTGACAGCAGAGCTCAGAGCCGACCGAGATGTCGTCGCCTCGCCCATTAGTCATCCCTGACAGTATAATTGTAAGACTTTTTCCTGCTGGCACGTACAGCAGTGTCTTCAAACAAGTGATACTTCTCATTTTTCGTTTTTGCTTTCTCTATGAGAACAACAATtgccaaaacaaagaaaagcatctGCCTTGCTCTCTCTCCCGTTTgactcctccctctctctctctctctccagagcCCAGTAACAGCTGGATTTGGGGAACTGGTGACCCCACCATGACTCACCGGACAATCCACTTGTTCCGGAAGGGGCTGCGACTCCACGACAACCCTGCGCTGCTGGGGGCCCTGGAGTCGTCGGCCGTGGTGTACCCGGTGTTCGCGCTGGACAGAGACTTCCTGCAGGCGGGCGCGCTCACCGGTGGGCTGCGCTGGCGCTTCCTGCTGCAGAGCCTCCAGGACCTGGAGCGCAGCCTTGCCACCCTGGGCTCCCGGCTGTACGTGCTGCAGGGCCGCTACGAGCAGGTGCTCCGGGACCGGGTGCGGCGCTGGGGTGTCACCCAGGTCACCTTCGACACTGAGGTGGAGCCCTACTACGCCCAGCAGGAGGACTGCATCCGCGCCCTGGGCCGGGAGATGGGCTTCGGTGTGCGCTCCTGTGTGGCGCACACCCTCTACGACCTCCGGAGGATCGTTCAAGCCAATGGTGGGGAGCCTCCTCTGACGTATAAGAAGTTTCTCCACGTGCTGGCGCTGCTAGGCGACCCAGAGAAGCCAGCACGGCAGATCACCCCCGAGGACTTCCAGAAGTGCCACACCCCCACTGAAGAAGGCACGGAGCAGGACCGAGTCCCCAGCCTGGAGGATCTTGGGATAGCGGTGGACACGGAGCCGCTGTGGATCGGCGGGGAGTCGCAGGGTCTGCAGCGACTGGAGAAGCACATGGAAAACCAGGGTTGGGTGGAAAACTTCGCCAAGCCTCGGACGATCCCCAACTCCCTGCTGCCGAGCACCACGGGCCTGAGTCCGTACTTCAGCACCGGCTGCCTGTCCGTCCGCACCTTCTACCACCAGTTGTCTAATATTTATGCGCAGTCCAAGAACCATTCCCTCCCTCCGGTGTCGCTCCAGGGCCAGGTTCTCTGGAGAGAGTTCTTCTACACGGTTGCTTCAGCCACGCCCAACTTCACAAAGATGGCAAGCAACCCCATCTGCCTACAGATCGACTGGGCCACGAAGGCGGAGGCCCTGGAGAAGTGGAAAATGGTGTTTGAGGAGTACCTGCTGGACGCCGACTACAGCGTGAACGCAGGGAACTGGATGTGGCTCTCTGCCAGTGCCTTCTTCCACCAGTACACCCGCATCTTCTGCCCAGTCCGCTTTGGCAGGAGGACCGACCCTGAGGGACAGTATCTCAGGTCTGTGGAAAAGATGGTGGCTTCCACG
>TU59115
GGCCAAGACGGGCTTCCCCTGGATCGACGCCATCATGACCCAGCTGCGGCAGGAGGGCTGGATCCACCACCTGGCCCGGCATGCGGTGGCCTGCTTCCTGACCCGGGGAGACCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTGTTTGAGGAGTACCTGCTGGACGCCGACTACAGCGTGAACGCAGGGAACTGGATGTGGCTCTCTGCCAGTGCCTTCTTCCACCAGTACACCCGCATCTTCTGCCCAGTCCGCTTTGGCAGGAGGACCGACCCTGAGGGACAGTATCTCAGG

Function

symbol description
cry4 Enables photoreceptor activity. Predicted to be involved in circadian regulation of gene expression and entrainment of circadian clock by photoperiod. Predicted to act upstream of or within protein-chromophore linkage. Located in cytoplasm. Is expressed in several structures, including brain; eye; heart; integument; and pleuroperitoneal region.

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0003913 DNA photolyase activity molecular_function
GO:0009881 photoreceptor activity molecular_function

KEGG:

id description
K02295 CRY; cryptochrome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013882 True 2069 mRNA 0.56 7 45919636 45928309
TU59115 False 295 TUCP 0.63 2 45923922 45924348

Neighbor

gene id symbol gene type direction distance location
AMCG00013876 LOC105900578,LOC105920322 coding downstream 59769 45857466 ~ 45859867 (-)
AMCG00013877 NA coding downstream 88195 45823117 ~ 45831441 (-)
AMCG00013874 rbbp5,LOC106583489 coding downstream 102942 45807005 ~ 45816694 (-)
AMCG00013875 NA coding downstream 113303 45805431 ~ 45806333 (-)
AMCG00013865 NA coding downstream 134812 45783866 ~ 45784824 (-)
AMCG00013887 cept1,LOC105013905 coding upstream 50797 45979106 ~ 45991807 (-)
AMCG00013886 kctd20,LOC106572174 coding upstream 80795 46009104 ~ 46023024 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding upstream 100106 46028415 ~ 46038881 (-)
AMCG00013888 NA coding upstream 122284 46050593 ~ 46074428 (-)
AMCG00013891 NA coding upstream 158774 46087083 ~ 46087778 (-)
G47365 NA non-coding downstream 64836 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 91385 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 92982 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 296881 45622515 ~ 45622755 (-)
G47185 NA non-coding downstream 651240 45268054 ~ 45268396 (-)
G47538 NA non-coding upstream 303016 46231325 ~ 46238514 (-)
G47661 NA non-coding upstream 875302 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 1129230 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 1143034 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 1297492 47225801 ~ 47227254 (-)
G47261 NA other downstream 295741 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 575621 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2305057 43609282 ~ 43614579 (-)
G46742 NA other downstream 3218568 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 3463878 42428777 ~ 42455758 (-)
AMCG00013883 NA other upstream 33881 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 147120 46075429 ~ 46083542 (-)
G47501 NA other upstream 232230 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 370852 46299161 ~ 46311118 (-)
G47666 NA other upstream 943560 46871869 ~ 46875370 (-)

Expression


Co-expression Network