AMCG00013887 (cept1,LOC105013905)


Basic Information

Item Value
gene id AMCG00013887
gene name cept1,LOC105013905
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45979106 ~ 45991807 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013887
CTCGCCGGTGCTGTGGCCCCAGCCCCGCTCTGCGGCCGCGTCTCCCGGCCTGCCCTGTGCGCGGCGGAAGTAGTCGGCGCTTTCCGGTTGTCAGAGCCGGCAGCGCGGTGTCGGGGGTTGTCTATCCGGTCTCGTCTCTCCTAGTCCGGCCGGAGCTGCACTCACTCCACCAGCGGGAACCCTCTTCTTTCCCGGGACCGTCCGCTCTGCACCCCTGCCCCCTGCGAGCCGCCACAGCGACGTCCTTTTCGGGCGGAAGGGATTCGTCTGCCTCGTCCCCCGTGTCGGCGCTGTCAGCACGGAAGACCCCAGCGAGGGAGGCCGGAGCTGTGGGTCGTTTCTGGGACTGAGCAGGAGCTGAGATCAGCCGCGCTGTGGATCCCCAGCGGCTGTCCGGGCGGGAGGCTAGGCTAGGCTAGGCTGTGTGTGGGCACTGTGCGAGTAGACGGGCGCTCCTGATGAGCGGGCACCGGGCAGGGAGGATCCGCACCAGGGATGCCGACCGGCCGCTGGACTTGGCATGCCGGCCGACCCCCGGGCTGAGCGGGGGCGGCGTGGGGGGCGGCACCGGGTGTATCCTGAGCAAGCTGATCCAGCTGCCCGCACCACCCCTATCCCGGCACCAGCTGAAGCGCCTGGAGGAGCACCGGTACAGCAGCGCAGGCCGCTCCCTGCTGGAGCCCATCATGCAGAGGTACTGGGAGTGGCTGGTGGCCCGCGTGCCCGCCTGGATCGCTCCCAATCTCATCACCGTTGTCGGCCTGGTCACCAACATCCTTACCACCTTGGTGCTGGTGTACTACTGCCCCACTGCCACTGAGCAGgcaCCTTTGTGGGCATACCTGGCGTGTGCCGTAGGTCTGTTTGTCTACCAGTCTCTGGACGCGATAGATGGAAAGCAGGCGAGACGAACCAACAGCAGCTCTCCCCTGGGGGAGCTGTTCGACCACGGCTGCGACTCCCTCTCCACAGtgttcGTGGTCCTGGGGACGTGCATCGCAGTGCAGCTGGGCACCAACCCAGACTGGATGTTCTTCTGCTGTTTCGCCGGGATGTTCATGTTCTACTGCGCCCACTGGCAGACCTACGTTTCAGGCACCCTGCGCTTCGGCATAATTGATGTGACTGAAGTTCAAATCTTCATAATAATCATGTATTTGCTGGCAGCGATTGGAGGATCCGCTTTTTGGCAATCTCCgATCCCAGTGATAAAAATCGAAATGAAAATCATTCCTGCTATCTGTACTGTAGTGGGGGCTATTTTCTCCTGTACAAACTACTTCCGAGTCATCTTCACAGGAGGCGTGGGGAAAAACGGATCCACAATAGCGGGAACCAGTGTCCTGTCACCTTTCTTGCACATAGGATCAGTTATAACACTGGCAATAATGATCTATAAGAAGTCTGCAGTCCAGCTCTTTGAAAAGCATCCCTGCCTGTATATCCTGGCCTTTGGCTTCGTATCGGCCAAAATTACCAACAAGCTAGTGgTGGCACATATGacaaaaagtgaaatgtatCTTCATGACCTGGCCTTCTTGGGCCCTGGGCTGCTATTCCTGGACCAGTACTTCAACAGCTTCATTGATGAGTATCTGGTCCTTTGGATTGCTCTGGTCTTCTCTTTCTTTGATCTCGTCCGTTACTGCGTCAGTGTTTGCAACCAGATTGCGTCTCATCTTCATATTTGTGTCTTCAAAATCAAGCCGCCCCCCACAGTCTCCAATCAGCAAGGGCACAACCACCACTAATGACTTTTCTTTGGGTGTCGTCTTCgatcgttttttttgtttgcttttttctggGTCAACGGAGATGTGATCTCTTCACCAAGTGAATGTAAATCAGTAACGAGGACCCCGGCGAAATCTGCGGGAGGGACGGAGGGATTCAGATGaagataatttatttcagtcacTGTTGTGTGCAATTCTGTTGTGTTGCCAGCCTCGTCTCGTGACAGACTGACGCCGTGCTTCTGGCATAAGGCACAAACGAGGAAAGTTTTTTGTCGTCGTTAGTTGTGTCTGTCGTTGATCAATCTGAATTCACTCGCGACAGTTTATCTAGGAGTAGGGTTAACTTAGTAAGGATAAAAATGAATGTCAGCTGATAGATCCTGATCAATTCATCatgcagtttaatttgttttaaatgacttttaGACCTTTCTCCCTTGGTGTGTTGGACGCTGGCCAACAACCAAGCGCAATGGAACATAGTAATCGTTGTTACATTTCAGAGACCGTCAACGCTCGTCCTTCGTGTTCCTTGTCCGGCTGTTGAGGTGCCGGATCATTTCCTCGCCCTGTTACATCCCAGGTCTTTTAGTTGGCTGTTTTTACCTCCAGTTGGAAAGGTGAGACTTTCCAGCCAGAAAGAAAGTCTACTTTTAATCAGAGTGCTGCTTTATTGGATGGTTATGAATAGTTTAGAGCaggagaataaaaataaataacttttttgttttttgccactGCTGCCAAAATGATTTTGAGCTTCATTAAGAGGGGGCactcatttattaatattttgttataaatgCAACTTAATGTCATAAGATGCTTTAGTCTCGCCTCTTGTCTATAATGCTTGACCtgtaacttaaaaaacaaaaataaaacttgccATCTGTGTCGCCCATagagtgcattgtgggtaaaggaaaatgtattctgtcaAAAGGCAAATTTGAGATAAGGCAAgtcatcttgtttttgttttcctttgtttaccTACCTACAGGATTAACACCATAACCTTTTATGACAATGTAATTACACAACACGGGTAGCTATGTGTCATTTTTCTCCAGCGCTTTTTCATGCTGGGACTAAAACTGGATCTTCTGTTTTCaggataattattatttttaattgtcgAACTCCAGTTGACCTTTAAGACTGCGTTAGTGACTCTCCGGTAGATGTGAATGCTAACCTTTTCCAGTGCAGAGACCTCACAGACAGCAATATGAACCGAGCCAGCTGAGCCCACGTGTCACTACAGACATTTTAGTTATCGTAGCCATAACAAGTAGTCCAGGGATTCACTTACTGAATACTGACAGGCTTTGTCATTTTTGCCTTATACAATCAAGACTATATTGTGTATTATTCATTCTAGGCTGAAGTGATGAGCAAAAGCTGTTGTAGCTAATATCTGTGTGGTTAAAACTCAGAATGCTTCACATTTGAATCCTGTGGATTGTCGTTGCTAGCAGagccattgttttctttatagagttgttttgtgtgttttggacTGAGTTTCAGGCAGTCTGACTTAGCCCTGAAATAAGAAATCAGTTTAACCATAAGCAGCCAGAACACGTCCGTATTACTGTAAGTGTTATGTATTCGACGTTTCCTGCCTTGACGGAAACGATGCTAGTAGGACTCTTAACGAATAACTTTACTTTGCTCTAATCTCttaatatttttgctttgaataGAGAAGTGTGAGAGGGCGATTAGGGAGCAGATTGATACtgtaaaatgcagttttgttatGACAAGCCAATCATGTCTTTGCAACTctacttttgtatttaatcttagttttatttcacaaatgGATGCATTCATCCACCTCATGTATGTTTCCTTTTAAGAAAGACGACCTGTCCAGGATGTATTCTGTATTAATGCTTTGCTGCTAAATCTCCTTCTTTGAtgtcttttaattttaagacatttttgttttatgtgtttaagcattaaaatattaatgcaaGTATTTAGTGAAGAATCTCCATTTCAAAGCTCTTAAACACACCTGTCTTGTTTAGCTTGCAGCATGTAGAGaccacagttgttttttgttatgaaagaaaaaagtggtTGCCTTAAATTccttttgtcttgttttctttttcatggatgttttgtatttgacatTACAGTGTTAACTCAGACAGTACAAGCTGTCTTGACTATTGCTGAACTGGAAAAGGCTAGTGTCAGGAATTAGTATTAGCCAGACTACAGACTATCAATCTCAGGTGTAAAATTACATGCTATTAGGTAAAAACCAAACCATGGTCAGTAGACAATCGTTTAGTTTGTCTCCCccgaataaaaataaatgcatttaacataATAGCTGCTGCTTACTCCATGGATTCTTGTCTGCTAATGATTGTGCGTCTGACATAATATGCATAGTTTACGTGTAGAAATGCTGGCTACCCTATGTGTTTCACCTGCTTTTTACTGTCAGTCCAATGCCTTGACTCAAATCAAGAACATTGTAGTTTGATTTCAGAGTATTAAACAGTATATGTCCATAAAACACGGcttcataatttatttgttcCCAAACCACAAATAAATCTGAATTCTTCAGCTTTAATGACTTCAGTCGAGTCACTATGACATCTCTTGCTGTGCGAAGTATCTCCCTTTCTGAAAAGGAGTCGTAAATGTTACGTTTTGTTTCGGTAAATGACATGCATGTGTTAATAAGGTACAGATCCAAACTGCTTtcgtttttaattaaactgagtATTTCAAAGgcaagtttaattaaaagggTTATTACAAGCTCAAAGCAAAAGGTACGCATACACTCTGTCTCTGCCAGTGTACCGTGCGTTGGGTTGGCTCTTCCCAAAATCGAAAGCTATTATAGATCTTACAATAATGTTCATTTTTGTAATGGGTGGACAGCCCTAAGCCACAAACTGCCTCTAGCTCTACAAATGTAACCAAAGCTGTTGTAATTCTTGCTTGGTTTCAGTCTCATTTTAGATAACTTAAAAGCCTAAccatatttgattttatttttcttgccttCATAGTGTTAAATGACTCATTTTGATGTTATGTTTGCTTGATTGTATCTTTCctgtaaaaaaaatcttaataataatttttaaataaaac

Function

symbol description
cept1 Predicted to enable diacylglycerol cholinephosphotransferase activity and ethanolaminephosphotransferase activity. Predicted to be involved in phosphatidylethanolamine biosynthetic process. Predicted to act upstream of or within phosphatidylcholine biosynthetic process. Predicted to be located in nuclear membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane.

NR:

description
PREDICTED: choline/ethanolaminephosphotransferase 1-like

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K13644 CEPT1; choline/ethanolamine phosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013887 True 4886 mRNA 0.45 9 45979106 45991807

Neighbor

gene id symbol gene type direction distance location
AMCG00013876 LOC105900578,LOC105920322 coding downstream 119239 45857466 ~ 45859867 (-)
AMCG00013877 NA coding downstream 147665 45823117 ~ 45831441 (-)
AMCG00013874 rbbp5,LOC106583489 coding downstream 162412 45807005 ~ 45816694 (-)
AMCG00013875 NA coding downstream 172773 45805431 ~ 45806333 (-)
AMCG00013865 NA coding downstream 194282 45783866 ~ 45784824 (-)
AMCG00013886 kctd20,LOC106572174 coding upstream 17297 46009104 ~ 46023024 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding upstream 36608 46028415 ~ 46038881 (-)
AMCG00013888 NA coding upstream 58786 46050593 ~ 46074428 (-)
AMCG00013891 NA coding upstream 95276 46087083 ~ 46087778 (-)
AMCG00013898 tmem9,LOC107679355,LOC107711977,LOC106572715 coding upstream 102733 46094540 ~ 46102616 (-)
G47391 NA non-coding downstream 56192 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 124306 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 150855 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 152452 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 356351 45622515 ~ 45622755 (-)
G47538 NA non-coding upstream 239518 46231325 ~ 46238514 (-)
G47661 NA non-coding upstream 811804 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 1065732 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 1079536 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 1233994 47225801 ~ 47227254 (-)
AMCG00013883 NA other downstream 4795 45962190 ~ 45974311 (-)
AMCG00013882 cry4,LOC108413014 other downstream 50797 45919636 ~ 45928309 (-)
G47261 NA other downstream 355211 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 635091 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2364527 43609282 ~ 43614579 (-)
AMCG00013890 cacna1s other upstream 83622 46075429 ~ 46083542 (-)
G47501 NA other upstream 168732 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 307354 46299161 ~ 46311118 (-)
G47666 NA other upstream 880062 46871869 ~ 46875370 (-)
AMCG00013932 ruxe,snrpe other upstream 1196788 47188595 ~ 47200897 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00225560_00231307 CEPT1, CEPT1B coding CI01000186 null 225560 ~ 231570 (+)