AMCG00013898 (tmem9,LOC107679355,LOC107711977,LOC106572715)


Basic Information

Item Value
gene id AMCG00013898
gene name tmem9,LOC107679355,LOC107711977,LOC106572715
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46094540 ~ 46102616 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013898
AGTAAAACCAGGAAGGCGGGACCACAGTGACTGAATGACAATGTTTCTCACGAATGACAGTATACGTGACAAAATGTTGTCCAATAGAAACGCAAAGGTGACCAAGAAGGCGGGACCGTCGTGACGGAATGACAATGTCTCCTGCCAATGAGAGCAGAGACAGCTGCGCTTTAAAGACGCAGAAACGACGCTAAACGGACTGTAAGGGACCCCTGTGTGAAGCCGTGTCAGTATGTGGCTGCGCGGCCCATTTAAAAGCCTCAAGTTCATCCTGCCTCTGGTCTGGATCTGCATTCTCTCTGAGCTACTCCCTCGGACCCAAGCCACCAAGagcTTCGAAGATGTGCGCTGCAAGTGCATCTGCCCTCCCTACAGGAACATCAGCGGACACATCTACAACAAGAATGTTTCTCAGAAAGACTGCAACTGTCTCCACGTGGTGGAGCCCATGCCCGTGCCCGGCCATGACGTCGAGGCCTACTGCCTGCTGTGCGAGTGCAAATACGAGGAGCGGAGCAGCACCACCATCAAGGTGACGATCATCATCTACCTGTCGGTGGTCGGCTCCCTGCTGCTCTACATGCTGTTCCTGCTGCTGGTCGACCCGCTGATCCGCAAACATGAGTCCTATATCCAGCCGCTGCACAATGAGGAGGACAGCGAGGATGCGCACTCCCACGCCAGCGGGGGTCCGGGCCGGGGCAACACGGTGCTGGGGCGGGTGGAGGGGGCGCAGCAGCGCTGGAAGCGGCAGGTGCAGGAGCAGAGGAAGACCGTGTTCGACCGCCACAAGATGCTCAGCTGAAGCCCCGGCCTGGCCCAGCCCTGTCCCCCCTTTCCCCTCCCTGCCGCCCGAGAGAGCCTGGGGAAATGCATTGCGTTGCAAATGTCTCCTTGTTGGGGTTCTtctctgtctccgtctctgtTGTCGTCGTGTGACCACAGAGGAGTTTGTTTCTCCCTCCCCCATCACAATCTATTTGCTCATTATcctgtcattaaaaaaacacgCTAGTCTCCTGATATATTCTACCTGATGTGACGCAGTATGTGATGGGATTCGGAGAAGGTCGGTGTTCTCTATTGTGGGTTCTCTCTCGAATGTCTTGTCAGTTTAAAGCACTTTACTATGACGTTATGGCTACAGACAGTTGGGGTTTAggttgtttaaatgtaatgggCATTCGTTTAAACAAGACACCTTAGCCCAAATCTGTGACAAGCCCTTTACTAAGCTCTGTCACAGGTCTTTCTTACACCCAGAGAGGTGTGTATTAAACTTTAAGATCAGTTTTCCTTTTAGATTTAGGCTTTAACAGAATGTCACTCATCTTTAGTTTGAAGGTATGTGACTTTTGACTCCATCTCAGTAAAATTTCACTCCAGGGATCCAACTACACATTCTGCGCCATGTTTCTATATTTCCAAGCTAGGACTCTTGTACGTTCTATCACGGACGCAAAATATGAAACTAATGCTGCTAAATAGTAATCTCTTGCTTTTTAGAATCACTTGGCCTATGAAACTTCACCCATCCCTGGGGTTTTTATATACCGTTTACTTTTGTTTGCCTCCAAAACAGAAACCTTCAAAATGGAATGGTCTATGACTCCAGGGAATGgcgcatttttaaaatgatgtttgCTCCTAAAGAATGTCTTCTAATGCTtaagtttgcttgtttttgttttctcactaTTTAAGATTAAGTTATTGTGATTATTGGCTGGAAGGGCACATTCCTCGTTTTGCAGCCTGAAAAtggaaacacattatttttcagtttccttgGTCTTGGCCACCATTCCTCACTGGATTTTGCACGTAAGGGAACAGAAACTcacctgtgtgtttttataccTGCTGTAGACGGAAAGACCAGCTTCCTCGCATTATTAAGacgattattatttattaataatgcagtGGTACGTGTGCTTGCGAATGATGTACGGCAGTGATCTGTACAGTGACTGACTGTGCACTGGTTTGGGCTGAGACGTGAATCttgtattaattaaagataGCCTTGATTATGCTGTGAACCGAATAAAAGATattgatgaaaacaaa

Function

symbol description
tmem9 Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human TMEM9 (transmembrane protein 9).

NR:

description
PREDICTED: transmembrane protein 9 isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013898 True 2073 mRNA 0.48 6 46094540 46102616

Neighbor

gene id symbol gene type direction distance location
AMCG00013891 NA coding downstream 6762 46087083 ~ 46087778 (-)
AMCG00013888 NA coding downstream 20112 46050593 ~ 46074428 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding downstream 55659 46028415 ~ 46038881 (-)
AMCG00013886 kctd20,LOC106572174 coding downstream 71516 46009104 ~ 46023024 (-)
AMCG00013887 cept1,LOC105013905 coding downstream 102733 45979106 ~ 45991807 (-)
AMCG00013905 dyrk3,zgc:172180,LOC107728622 coding upstream 282066 46384682 ~ 46386241 (-)
AMCG00013908 NA coding upstream 285538 46388154 ~ 46389618 (-)
AMCG00013907 NA coding upstream 302208 46404824 ~ 46406931 (-)
AMCG00013906 NA coding upstream 349448 46452064 ~ 46465408 (-)
AMCG00013910 srgap2 coding upstream 367755 46470371 ~ 46507717 (-)
G47391 NA non-coding downstream 171626 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 239740 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 266289 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 267886 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 471785 45622515 ~ 45622755 (-)
G47538 NA non-coding upstream 128709 46231325 ~ 46238514 (-)
G47661 NA non-coding upstream 700995 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 954923 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 968727 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 1123185 47225801 ~ 47227254 (-)
AMCG00013890 cacna1s other downstream 10998 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 120229 45962190 ~ 45974311 (-)
AMCG00013882 cry4,LOC108413014 other downstream 166231 45919636 ~ 45928309 (-)
G47261 NA other downstream 470645 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 750525 45338859 ~ 45344015 (-)
G47501 NA other upstream 57923 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 196545 46299161 ~ 46311118 (-)
G47666 NA other upstream 769253 46871869 ~ 46875370 (-)
AMCG00013932 ruxe,snrpe other upstream 1085979 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 1762234 47864850 ~ 47868863 (-)

Expression


Co-expression Network