AMCG00013910 (srgap2)


Basic Information

Item Value
gene id AMCG00013910
gene name srgap2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46470371 ~ 46507717 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013910
ATGGTTCTGGCCCACGCGTCCGGGGCCCTCCAGATCCGCGCCCAGCTGGTGGAGCAGTTGAAATGCCTGGACCAGCAATGCGAGCTCCGCGTCCAACTCCTGCAGGACCTCCAGGACTTCTTCCGCAAGAAGGCCGAGATCGAGGTTGACTACTCCCGCAACCTGGAGAAGCTGGCCGAGCGCTTCCTGGCCAAGACCCGGAGCACCAAGGACCACCAATTCAAGAAGGAGCAGAACGTGTTGTCTCCGGTGAACTGCTGGAACCTGCTGCTGAGCCAGGTGAAGAGAGAGAGCCGGGACCACGCCACGCTCAGCGACCTCTACCTCAACAACATCATTCCCCGCTTTGTGCAGGTCAGCGAGGACTCGGGCCGGCTCTTCAAGAAGAGCAAAGAAGTGGGCCTGCAGCTTCAAGAGGATCTGATGAAGGTTCTCAACGAGCTTTACACGGTCATGAAGACCTACCACATGTACAACACGGACAGCATGAACGCCGAGTCCAAGCTGAAGGAGGCGGAGAAGCAGGAAGAGAAACAGATGGGGCGCTCGGTGAAGCAGGAGGACCGGCAGAGCCCGCGCTCCCCGGACTCACTTACCAGCGTGCGCATAGAGGAGAAGCACGTGCGTCGCAGCTCGGTCAAGAAGATCGAGAAGATGAAGGAGAAGCGCCAAGCCAAATACACTGAGAACAAGCTGAAGGCAATCAAAGCCAGGAACGAGTACCTGCTGGCGCTGGAGGCCACCAACTGCTGTGTGTTCAAATACTACATCCACGATCTCTCTGACATCATCGATCAGTGCTGTGACCTGGGCTACCACGCCAGCCTGAACCGGGCTCTGCGCACCTACCTCTCGGCCGAGTTCAACGTGGAGTCCTCGAAGCACGGCGGGCTGGAGACCATCGAGAACGCCGCCGAGAACCTGGACGCCAACATGGACAAGCAGCGGCTCATGGAGATGTACAACAACGTGTTCTGCCCGCCCATGCGCTTCGACTTCCAATCCCACATGGGAGACTCGgtGGGACACATGTGTGCTCAGCAGCCCCTGCAGAGTGAGCTGCTCCAGAGGTGCCAGCAGCTGCAGTCCCGCCTCTCCACACTCCGGATCGAGAACGAGGAGGTCGGTGCCGCCCGCCGGGACCCACGATGCAGTGCACCGCCGCGCCCGGGCCCGAGACTGACGCCCCTTTGTGCCCCGCAGGTGAAGAAGACCATGGAGGCGACGCTGCAGACGATCCAGGACATGGTGACCATCGAGGATTTCGACGTGACCGACTGCTTCCAGTACAGCAACTCCATGGAGTCGGTCAAGTCCACCGTGTCCGAGACCTTCATGAGCAAACCCAGCCTGGCCAAGAGACGGGCCAACCAGCAGGAGACCGAGCAGTTCTACTTCACGAAACTGAAGGAGTTCCTCGAGGGCAGGAACCTGATCACCAAACTGCAAGCCAAGCACGACCTGATCGAGAAGACACTGGGAGAGAGTCAGAAGACAGACTGCTGCCTGGCCAGCGGAAGAAGAAACTCCACTGTGCGGAAACAGGACTCCAGTCAAGTCATCCCTCTGATGGTCGAAAGCAGCATTCGGTTTATCAGCCGCCATGGTCTGCACCATGAAGGCATTTTCCGAGTGTCGGGGTCCCAGGTGGAAGTCAACGACATCAAGAACGCCTTCGAGAGGGGAGAGGACCCCCTGGCGGGCGATCAGAATGACCATGACATGGACTCCATCGCCGGGGTGCTGAAGCTGTACTTCAGAGGGCTGGAGAACACCCTCTTCCCAAAGGAGATCTTCCATGACCTCATTTCCTGTGTCTCCCTGGACAGCCTGCAGGAGAGAGCCATGCACATCCACAAAGTCCTGCTGTCTCTGCCCAGCCCCACGGTGGTCATCATGAGATACCTGTTTGCCTTCCTCAACCACCTGTCCCAGTACAGCGAGGACAACATGATGGACCCCTACAACCTGGCCATCTGCTTCGGCCCCACGCTGATGTCGGTCCCCGAGGGCCAGGACCAGGTGTCCTGCCAGGCGCACGTCAATGAGCTCATCAAGACCATCATCATCCACCATGAGAGCATCTTCCCCGGTCCCCGCGAGCTGGAGGGGCCCCTGTACGACCGGGGCGGCGTGGCCGAAGAGTGCAGCGACGGCCCCCACGCCGAGCCGCCGGTGTCCGAGGACCTGGTGCCAGACACGGTGTCCGAGCACCACAACAGCGAGGACGAGTCGGAGCCCATCGAGGCCATCGCCCGCTTCGACTACTCGGGCCGCACCCCCCGCGAGCTGTCCTTCAAGAAGGGCGCGTCTCTGCTGCTGTACCAGCGCGCCTCCGATGACTGGTGGGAGGGACGGCACAACGGCGTGGACGGACTGGTCCCGCACCAGTACATCGTGGTCCAGGACACGGAGGACGGCTTCACCGAGCGAGGGAGTCCGAAGGCGGAGCTGGAGGTGGCGTCGGACGGGCCCCTGGCGGAGGAGAAAGTGTCCGCTAGGGGCAGCGTGAGCTCGCCCACAGGAAGCCACGTGGCAGACATCTACCTGGCCAACCTCAATAAGATGAGAAAGCGCCCAGATACCGGCAGTATCCACAGGGCCTTCCGCACCGAGGGCCTGGGACTGGGCACCGGGCCCAGTGATGGGACCCCGGGGGCCACGGCCGGGCTCCGGACCACCTCCATGCCGGTGGGCGGCCTGCCGAAAGAGGGGCCGGACAAGAGGCCCGTGAGCGCCCACAGCGTGCTCAACTCCATCACGCGCCACTCGTCGCTCAAGAGCAAGGTGGAGAGCCCGCAGTTCCGCAAGACGGCCAGCGCCGGGCGCTCCAAGAGTTTCAGCAACCACCGGCCCCTGGACCCCGAGGTCATAGCGCAGGTAGAGCACAGCTCCCAGGACATCGAGGCCACGATGAACACGGCACTGAACGAGCTGCGTGAGCTGGAGCGCCAGAGCAGCGTGAAGCACACCCCCGACGTGGTGCTGGACACGCTGGAGCAGCTGAAGAGCAGCCCTGGCCCGGGCCCCACCTCGGAGCCGTCCAGCCCCCTGCACGCGCGGCTGCTGCGGGAACCCGACAGCTCCCAGCACCCCCTGCAGCGCAGCTCCAGCTCGGCCAGCGACGGGCCCAGCACCTTCCGCCCCGTCAAGACCCCCAAGCAGCAGGCCCCGCCCCCCGGCCGCGACGCGCGCCCGCCCGCCACCCGCCCCAAGCCCGTCGTCTTCCCCAAGACCGCCTCGGCTGGCCCACCCATGGGctcccccacctccaccacGCCGCCCACGCCCCCGCCGCCACCGCCGCCCTCTGACAAGTCCTGCCCCGTGTGA

Function

symbol description
srgap2 Predicted to enable GTPase activator activity; protein homodimerization activity; and small GTPase binding activity. Involved in glomerular visceral epithelial cell development. Predicted to be located in several cellular components, including dendritic spine head; phagocytic vesicle; and postsynaptic density. Predicted to be active in cytoplasm. Orthologous to human SRGAP2 (SLIT-ROBO Rho GTPase activating protein 2).

NR:

description
PREDICTED: SLIT-ROBO Rho GTPase-activating protein 2 isoform X2

GO:

id name namespace
GO:2001223 negative regulation of neuron migration biological_process
GO:0046847 filopodium assembly biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0060996 dendritic spine development biological_process
GO:0051014 actin filament severing biological_process
GO:0005829 cytosol cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0030027 lamellipodium cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0044327 dendritic spine head cellular_component
GO:0030054 cell junction cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG:

id description
K07526 SRGAP; SLIT-ROBO Rho GTPase activating protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013910 True 3333 mRNA 0.63 21 46470371 46507717

Neighbor

gene id symbol gene type direction distance location
AMCG00013906 NA coding downstream 4963 46452064 ~ 46465408 (-)
AMCG00013907 NA coding downstream 63440 46404824 ~ 46406931 (-)
AMCG00013908 NA coding downstream 80753 46388154 ~ 46389618 (-)
AMCG00013905 dyrk3,zgc:172180,LOC107728622 coding downstream 84130 46384682 ~ 46386241 (-)
AMCG00013898 tmem9,LOC107679355,LOC107711977,LOC106572715 coding downstream 367755 46094540 ~ 46102616 (-)
AMCG00013914 NA coding upstream 422858 46930575 ~ 46946388 (-)
AMCG00013916 NA coding upstream 462542 46970259 ~ 46976190 (-)
AMCG00013915 NA coding upstream 468974 46976691 ~ 46985670 (-)
AMCG00013920 NA coding upstream 487425 46995142 ~ 47000214 (-)
AMCG00013921 NA coding upstream 507339 47015056 ~ 47017727 (-)
G47538 NA non-coding downstream 231857 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 547457 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 615571 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 642120 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 643717 45825723 ~ 45826654 (-)
G47661 NA non-coding upstream 295894 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 549822 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 563626 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 718084 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 987694 47495411 ~ 47495684 (-)
AMCG00013903 NA other downstream 159253 46299161 ~ 46311118 (-)
G47501 NA other downstream 306884 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 386829 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 496060 45962190 ~ 45974311 (-)
AMCG00013882 cry4,LOC108413014 other downstream 542062 45919636 ~ 45928309 (-)
G47666 NA other upstream 364152 46871869 ~ 46875370 (-)
AMCG00013932 ruxe,snrpe other upstream 680878 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 1357133 47864850 ~ 47868863 (-)
G47896 NA other upstream 1459708 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1858326 48366043 ~ 48375096 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_02911431_02958568 SRGAP2 coding CI01000058 null 2911431 ~ 2958568 (+)