AMCG00013929


Basic Information

Item Value
gene id AMCG00013929
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47201255 ~ 47212425 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013929
AGCAGTGGCGCCATCTTTGTTCCGAAGCCGCAGCAGGAAGACGAGCGGACGGAGAGAAGAGGCGACGCTGCGCGTTTCTCTTTCAGGGGAACGAGCctaatccttttctttttaatagatatatataaacaccGGGTAACTAAAGCGTTATTTAACTCAATTATGTCGTTTTATTGGGAGGACtggggttatttttttttactttattgtggTGTCGAGCTATTATGTAAGCTAGTTGACGAGGGAGCGGAAGGCCTTCCTGCGATTAAGTAGATTATAATAATCGAAACACGTCCACTGTATCCATATTGTCGTGCCATTTACTCTCTCCTGGCTGTGTGCTATTGTATTAACCTGTGTGTTTAGGGACGGGGAAGCGGGTTAAAAACGCTGCACAACAAAAGAGACATCCCGGAGTTTTAATCGCTTTACTGGACCTATTGTGACCCTGTAGTTTAGTGTCTGTATAGAAACCTGATTTTCTCCCATGGCggactgtgtgttattattacagtatCGTAGGAGATTATAAACGCCTCCTGGCAGTGAACCATCTTGTTGATCTGTAAGGTTACCGTATGTCTTtcattgtctgtgtttttattgtccACAATATATCTCTGGTAATGTACAATAGTAGTGTATTTCAGCCACggtatttgtaataataatataggaaAGTTCAGTATTGACGATCAACACGTAGATGCAGTTTTGCACGGCCCTCCATGATTTTCTGAGTCCGATAATCTGATCCAGTTATCACAACCATGCAGCTCCAAATGATTGGTATTAGTCGTATCTATACCGACTATAACATGTCTTATAAAGGAGCCATACGAAAAGCATGGGGCACAGAATCATATATCGGTCCTaaatttattaacaaaaacGTGTTTCTCTTTATAATTTTTACAGTCAACATGTGTTGGCTACTTCCCACATGACAGTGTAGGGGTTTCACATGATCTGTAAATAGCGATCAGTGCCAAACAATGTTGTATGGTTGTGCCAAAACGTCATGGTGAATAAATGAGTCTCTGAACCAGGGCCCTTATCACTGTGCTTACAAATTGTCATCTGACATGCGTCCTACTGTGATGCTCCACATTCAAACCACAATCAAGcatatttaatgtgatttatttcataCCGTCTTATTCTGGTGTGAGGAATGGTCATCTTCAGATGTCCTAACTTCATAGGAATAGTATTGTAGAGAGAGATAATGACCAGGTTGATCCACACATCAAGTATCATTAACATGAATACATGCTCAAGCACTGTCCAGGTGGTTGCAAGGTTTCGTGTTTGGTTTGGTTGTGTAAAATTGtgtttccagatgtttttttcttttacacccTTTAAACTAGAAGTGTGAACAAGGTGTCTCTGAGCTCGTTAGATTAATGAGGTGGCCGAGGAGCAGTGGGTTCACCTGTGCTTTCTGGTGCCCTGAGGGGTGTGTAACACACGGTCAGGGTCCTGCAAATGGGATGGAAAGCATTTTAATCATCCAATCTATGCTTTCTAACACGCAGCCTGTCAATTCTAACCCAAAATGATGTTGTATGGAAAAAaagatggggaggggggagtgttttttgttctgtttttttttaaatttaggtAAAGAAGCAACTTGTCCTCCCTGCCTGAAGATCACTGAAAACAAATTCTCTAGAAGACGGCTGATTtctctactttttttttcttcttccccctcTGCTGTGACAACATGGCACCCCCCCTGTCCTATTTCTCTCTATCACAGccctctgccccccccctcaCAGTGGACTCTAGTAgaagattttttcttctttttttcccccacaccaATTTTTTTTCCGTATTCCTCCCGGCTGTCTTCTGGAATCCCGtcgggggaaaaaaaggaaatttgcCTCCTCCTCCACACCCCCACTCGCCTTATTCCCCACGCCCACATGCACCCCCCATCATCCcgctttaacaaaaaaaaggcaacaaacaaaaatattaagcgagagagaggagaggagaaaaaaaaagacttgccCCATCCGTCTCTAGGGATTTCAGGCAGCTGATGAGAGAGACCCCAGGAGCTGTATGTCAGAGGGGGAAAATAGAACAAGTACCCTTTGCCTTATAACTCATGGGTCGAGTGTTCCTTCAGGACCTGCAGGAGAGGCCGCTGGGAAGTGGGTGAAGAAGGGGACTACCCACTCATCGCGCCAGGGAAGATTCCCGTGGGCCTGTTCTTGGAAGAGACGTGACCCAGGAAGAGGCTGCCTGAACTGGAAGAAAAACTGACCTGTTGAGAAGAAGTCTTATTTCAGTTTCCTCACAATGTCCAACCAAGGAGATGACTGCTACTTCTTCTACTACTCCACCTGTGCTAAGGGCGACGGCTGTCCGTTCCGTCACTGCGAAGCGGCCATGGGCAGCGAGACGGTGTGCAACCTCTGGCAAGAGAACCGCTGCTTCCGCAAAGTCTGCAAGTTCCGGCACATGGAGATTGAGAAGAGGCGCAGTGAGATTGCCTGCTACTGGGAGAGACAGCCTGCTGGCTGCCAGAAGCCAAACTGTGCCTTTCACCACGACAAGCCCCGAATCATCGACGGGGTCTTCCTCCCAGCCAGTAAAGCTCCCGTCCTGAGGAAGGAGGAGGTAGAGGAGGAAGCCCCGCTGGCCgccctctctccccctgcccccACCGCCCTCCCCAGCCCAGCCAACCCGCAGCTCCGCGGGGTCATCAAGGCAGAGAACTCGGAGAGCGTCCCGAGCCCCACGCACCCCCCCGTGGTCATCAATCCAGCCGACGACGAAGACGAGGATGACGATGATCAGTTCTcggaggaaggagaggagagcaggACTGTGGCAGAGTCATCGCAGGCCGCGTCGCCAAGGAAAATGCTCTGCCACGGCAGCAGAGAAGATTCGTTAAACTTCGGCATCAAGACACTTGAAGAGATCCGTCTGAGAAAGACTCTGAAGGCCAATCTGAAGAGATCCGGACAATCACCCAACAGCCGTTCCCCACCAGCCAACGATCTTCCTCATCCAGCCCAACAAAACAACGGGACCAGCCTGGAGAAGGAGAGCGCAAGGACGGTGTTGAGGCCGGCGCTGCTTGGTGTTCAGAAGCCAGCCTTCCCCGTCCAGCCCGAGCTCCCCATCAAGCGCAGCATAGCGGACAGGCTGGGCAAACGGAAGGCGGCCCTTGTGGGAGACGTGACCGTTATGGTCAACAAAGATCTGTCGGTTGAGAGCGACCTGCCCCTGAAGCGCAGCCTGGCAGAGCGGCTGGGCAGTAAGGTGGCGTGTCCTGAGGACGGGGAAGCGCTTTCTAAGCTCTCGGTCCTAAagcctgtgagagagagactgggttTGCCTGGGGATCAAGCAGCCCCTGAAACAGCAGAGAGTGAGGCTCAGGGCAGACCGTCAGCTGGGATCCGCATCAAGACCCTGGAGGAGATCCGGTTGGAGAAGGCGGCCAAGTCCCAGGCGGAGGGAGGGAGTGCCCCCCCTGAGCAAGCCCCCACCGTGGACCCCCCGGCCGAGCAGAGAGCCGCCAGGGCCCCCGCTGGCGCCCGCATCAAGACCTTCTCCGAGATCCTGCATGCCAGGAAGCAGAAGCGCCTCGAGTCGGAGCAGGACGCCAAGGGTGCGACGCCCCCCCACAGCCCGGGAGACAGCAAGGAGGCGGCGAAGCCTGTGGCGGGTGGGCCGGAGGAGAAGGGGCCGGCGGCCGTGCCGGGTGCGGTGAAGGTGAAGACTCTGGAAGAGATCCGCCGGGAGAAAGCCGCCCGCATGCAGCGCGCAATGGGGAATGGCGCAGACGCAGAGAAGACCCCAGATGCCACGGACGGCGCCGGTCCAGGCCCCAGACAGAGGAGGATCCTGCGCCTCCCCAAAGCGCCGGCTGCAGgagCTCAGAATAAAGAGAAGACTGTGGAACAGCCCCAGGAGCCAGGCGCTGCTGCGGAGACCGGCGCGGACGGCGTTAAAGACGTCTCTCCGGCAGAGACGGTGAAGGTGAAGAGCTTCGAGGAGATAATGCGAGAGAAGCGCATGCGCCGGCTGCAGGGGGAGACAGTCGCTCCCCCACCCCCCGTGCAGGCGCCCGTCCCCTCTCCTCCGTCCCCAGCAAAGCAACGGGAGGAGCCCCCCCAGGCCCCCACCTCCCCCCGCAGACCGGCCACCACGATCCGGCAGAGACCGGCTAAAGTACAGCCGGTGCCAACTCCCGTCCAGCAGAGACCCTCCCCGCCAGCCCCGGTGAGACAGCGCATCACTCTCAGGCAGAAGGAAACTGCCCCGGCTGTGTCCCTGGCCCGGGTCGCTGCAGGGGCGCCCACATCTCTCGTGGCCAAGCGGACGCTCGCTGCTCGGGGCGGCTCCGTGGACTTGGCCGCCTCCCctttcaaacacacaaatctCCTCCCTGCTGCTCAGGAGGGCCCGTCTCCCGCCACCCCAGCCCCACAGCCCAGGCCCGGCTCCTCCACTGTGCCGGAGAGCCCCGGAGACACAGCACCGCCGGCACCCAGCCCTGCCCCCGAAGAGAAGGCGGTGAAGGTGGAAGAAGTCGTGGCCAAGGTGCCGACGCCGGAACCCAAAGGTAACGATCTCGTGTCTCCGCCTTCCTCCAGGAAATGGGGCGATCGGTCGAGCCCCGTCTGCAGTCTGGCTGCTGTAATCCGGTCTCTCTCTGTTCCAGTGCGTCCCAAGCTGAACGTGAAGCCCTCGGTGGTGAAGCCTGCAGCCCCCGTGAGGTTGGGCCAGAAACGCAAAGCGTCCGAGGGCCCCCGGTCTGCCATCGCGGCCGTCAAGCCTCTAAACAGCGCCCCCTCTGCCTCGGAGGAGGCGGCGCAGGAGCCGCCCTGCAAGCAGACCCAGACCACCACAAAAACAGAGCCAGAAACCGTGACGTTGCGGGAGGGAACTCGGGCCCCCGGCCCCTTAGAGGAGGCCCCTGCTGCCCCCCAGGCAGAGCCACAGCCACCCCCCACCCTGGAGCAGAACCCTGCCATGCCTGAGCCAACCCAAGTGTCTCCGGCCGCCACAGCGAGCCCCGCCGTGATGAGCCCCCCGGCGCGGCCTTCCTCCCAGGCGAAGGCGCGTCGCTTGAGCTCCACCTCCGGGCGCCCCCCTGCCGGCCCGGCCTCGGGCTCCGCTGTGGACGACTTCGAGGAGCTCATGAAGGAGTTCTCAGACGACCGGCTGGAGGACGACCTGGAGCTGGATCCCGCCAAGGACGAGGAcgagctgctgctggagctcTCGGAGATGATCGGCAACTAGAGCCGCGCTCTGGACTGCACTCGGGCCGCGGGGACTTCCCAATGGACTTGTTTTAAATCCGTACAGAGCAACAGCCACTGCTTCGAGAATCGGACATGGGGTGTGAGAAATACTACTTCCCCacgtttttttaattgctaagAAGTTGAATGTCTCCCCCTCACATTCAGCGCTGCTCCTGCCTAAGATGAACCCCCTCCGCTCtggattcatatatatatgtgtaaagtagggaaaggtttttcttttaactttttttttgccccAAAAAACGTGTATTTCTTGTAACTTAAACTTCTCCCTTCCTTTGCATAGTTTCtgcacatttaacatttaaatgtttctgcacAGTGTTCCCAGGGGGAATTTTTATCacaagtatttgttttcttgtaggTTTTCTTATAGATTTAAATCAGTCGTTTTTTCACAGTTGCAAACGGAAGAATGGTCAAACCCCCTCTCCTCGCGTGTGGAGGGGAGGATCTAACATAGAGAAGCCGGCCCGTACAATCTCCCCTGTGCAGCAAAGTTACATCCCACTGACTCGACTCGAATCAGATCTACTGAAGAGCTGCCATGAAGCGGTCCAGCCGGAGCCCATACTCGGCCTGCGCAGGTGTAGAACATCCTGAATTAGAAGTGGTGTGGAGCAACAGAAGCAGGGGGGCTCGGTCGACCGCACTTGCCTCGGTGTTTGCCAATCCAATTAATAGTCTTTTGACacctttaaataatgaaataaattcaAACTGGATGTAGCCGTGCTGGTTATCTGTATGCAGGCTGAATTCATGGTTCTTGAGTTAAgtatggaaaaagaaaatggcaacaaATCCCCTTTTATTCCTCTTCGGTGTCTATTAACCGCTTCAGTAAAGACAAGACGGACCCTCCCATCCAGACTGGAGGCTGCAGTTAAGGGGTGTAGAAACATTAgaagaataatgaaaatattaatgtCTGCATATTCACTGCAGTCTGTACAAAtcatgtagtttaaaaaaaaaaaaaaaaaaaggaaacactggTTCCATTAAAAATGCTGCTACAGGGACAAAAGTGTTGAAATGCCAGCCTGGTCCCGAGGACAGAGGTGGATATGAGCGAGAGCGCTTGCGTTAGAGCTGAAAGTCATGACAGAGGTGAACTGCATTTTAGTTCAGACACCAGCGATGGTAGTTTGCAGTCGCCACTGTGACTGACCCTGTGGCGTGAGTTCCCTGTACTGCGAATGCAATCCAATCCGTTCACCAACAGGCGCGTGTGAAGCCAGCTCCCCGCCCCGCGCCGCTCCTGGTGCTCCGGACTGAAACGGCTGAGGGGCCGGGAACGAGGACGCAGACTCCCAGGTTCCCCGCCGTGTTTGACCAGAACTAATGAGAAATGCAACACTGAAGGGTGGTGCACTCTGTCGAGGGGAGGGTGGATCAGTCACTACACCATTTCCTCTTGTGTGTCgattttatgatgatgattatgttcacagtatttttcattttcatgcttAAGTACTGATGTGCTGTATGTCTTACCTCCATTGCAGTGCTGAGACCGCTTTGGGGCCCATGCATTGTTTGCTTAAAGAGCTGAGAATTGATTTCTGggaggtggggaaaaaaacacttgcccatagctacaaaaaaaaaacgatcgGCATTTTACCATCCTCCGTTTCAATCCCCATCTGTAGAAGCTTTGGCTAGAtctcttttgttgttgtcagaCTTCTGTCAGTATGTGAATTTCATAGGTTGAAAACCAGCTTCTCAGGGACGTTATCTTGCCGTctatgtgtgggggggtggattgTGTTCATCCTGGTCTGCCCTGACTGTAGATGTGCACGTGCTGGATACGGCACATGccttacctgtgtgtgtgtgtgtgttttgcaagcTGTAGATAAAATCTCCACATGATGAATTAGTCCTGTTCACCTGGGCAAAATACCTGTAAACCTTTCTGATTGGCCTGTATTGCGCTGCTCTCATTGCTGGGATGAAACTGAGTTTTGCTCTGTTAACCAAGGAGTCTGGGGTTGGGTTTCTTTGTTgcttaatgttttcattttaaatgcctgTATACTACCATCAATGCcacttttcatttgtaaataaaacaaaacttttttaaaaaaa

Function

GO: NA

KEGG:

id description
K22415 ZC3H11; zinc finger CCCH domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013929 True 7442 mRNA 0.53 15 47201255 47212425

Neighbor

gene id symbol gene type direction distance location
AMCG00013925 NA coding downstream 39254 47151091 ~ 47162001 (-)
AMCG00013926 NA coding downstream 88313 47101579 ~ 47112942 (-)
AMCG00013922 NA coding downstream 174874 47024851 ~ 47026381 (-)
AMCG00013921 NA coding downstream 183528 47015056 ~ 47017727 (-)
AMCG00013920 NA coding downstream 201041 46995142 ~ 47000214 (-)
AMCG00013928 NA coding upstream 1174 47213599 ~ 47217346 (-)
AMCG00013930 LOC108435245,LOC108232143,LOC106519305,LOC106567267,LOC105906848,LOC105906847 coding upstream 18134 47230559 ~ 47240804 (-)
AMCG00013931 NA coding upstream 31957 47244382 ~ 47274829 (-)
AMCG00013933 NA coding upstream 63246 47275671 ~ 47290041 (-)
AMCG00013934 nfasc coding upstream 111286 47323711 ~ 47368062 (-)
G47718 NA non-coding downstream 80654 47057539 ~ 47120601 (-)
G47717 NA non-coding downstream 126227 47071343 ~ 47075028 (-)
G47661 NA non-coding downstream 362491 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 962741 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 1278341 45921106 ~ 45922914 (-)
G47766 NA non-coding upstream 13376 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 282986 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 328138 47540563 ~ 47545591 (-)
G47839 NA non-coding upstream 477420 47689845 ~ 47694894 (-)
G47917 NA non-coding upstream 804136 48016561 ~ 48016838 (-)
AMCG00013932 ruxe,snrpe other downstream 358 47188595 ~ 47200897 (-)
G47666 NA other downstream 325885 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 890137 46299161 ~ 46311118 (-)
G47501 NA other downstream 1037768 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 1117713 46075429 ~ 46083542 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 652425 47864850 ~ 47868863 (-)
G47896 NA other upstream 755000 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1153618 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1243478 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 1605558 48817983 ~ 48821156 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02230144_02236022 ZC3H11A coding CI01000306 null 2230144 ~ 2236982 (+)