AMCG00013931


Basic Information

Item Value
gene id AMCG00013931
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47244382 ~ 47274829 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013931
ATGCAGGAGCAAAGACAGGCGGCTCTGTGCAAAGGAGTCAAATCCCTGCACGTCCACTTTGATGCTGCAGCCTGGACATTCAAATATACAGGCTCAGCCACTAAGCTGGTGTGCTACTTCACCAACTGGTCCCAATACAGGCCAGGCACTGGAAAGTACCTCCCGGACAATGTGGACCCGCACTTGTGCACCCACCTGATCTATGCCTTCTCCATCATCAACCACAACAACGAGCTCGTCACCTACGAGTGGAATGATGAGACACTGTACCGGTCCTTCAACGCCCTGAAGAACAGAAACTCTCAACTGAAGACGCTGTTGGCTGTTGGAGGATGGAACTTCGGGTCAAGCCAGTTCTCTATCATGGTCTCGACCCCGGCCAATCGCCAGAGGTTCATCGACTCCTCCATCAGCTTCCTGCGGACACACGGGTTCGACGGGCTGGACCTGGACTGGGAGTACCCTGGTGCTCGAGGGAGCCCCCCGGGGGACAAGCAGAAATTCACCCTGTTGGTGAAGGAGCTGCGAGCGGCCTATGAGCAAGAGGCAGTGAACACTAAGCGTGCCAGACTGATGGTTACAGCTGCAGTGGCTGCTGGGAAGGCCAACATCGACAATGGCTATGAGATCGCCGAGATTGCCAAGTCCCTGGACTTCATCAGCGTGATGACCTACGATTTCCATGGAGCCTGGGACTCCTTCACTGGGCACAACAGCCCCCTGTACCGTGGATCCACAGACCAAGGGGATCTCATCTACTTCAACATTGAATTTGCGATGAAGTACTGGCGGGATCAGGGCACCCCTCTAGAGAAGCTGCTGATGGGATTCCCCACATACGGGCGCACCTTCCGCCTCACATCCCCCGACACCGGGGTGGGGGCTCCGGCCAGCGGTGCCGCCTCGGCTGGCCCGTACACCCGGGAGGCTGGGTTCTGGGCTTACTATGAGATCTGCACTTTCTTACCAGGTGCAACCATGAAGTGGATCGATGACCAGAAGGTGCCCTATGCCTACAAGGGCAACGAGTGGGTTGGCTTTGATGTCAAGAAGAGCTACGATACCAAGgtCCAATGGCTGAAGGACAACAAGTTCGGCGGGGCCTTCGTGTGGGCTCTGGACCTGGACGACTTTGCTGGACAGTTCTGCGGGGAAGGGCCCTACCCCCTGATCAGCCACCTGCGCTCCCTGCTCAACTCGGATCTGCCCACACTGCCTTCAacgccaccaccaccaccttccACTGATGACACCACACCCAGTCCCCCCCNNNNNNNNNNcaccaccaccaccaccaccaccaccaccgccaAGCCTGGAAGTGGCTTCTGTGCTGGCAAACCCGATGGAACATATGCCAACCCCACGGACCCCAACGCCTTCTACCAGTGCTCTCGGGGACAGACCTTCGAGATGAGGTGTGGCACCGGCCTGGTGTTCAATGACCGGTGCAAGTGCTGGTTGGGCCTGCTCCTGTGTCTTCAAATTGGCACAGCCACCAAGCTGGTGTGCTACTTCACCAACTGGTCCCAGTACAGACCTGGTGCTGCGAAATTCATGCCCAATAATGTCGACCCCCACCTCTGCACCCACCTGGTCTACGCCTTCGCCAGCATTAACAGCAACAATGAACTCGTCACCTACGATAACTCACAGCTGAAGACTCTGCTAGCTGTCGGAGGTTGGGTCAACGGCACAAGTCCGTTCATTGATATGGTTACCACGCCCAAGAGCCGCCAAAAATTCATCCAGTCTTCTATCAAATTCCTGTGGAAGCATGGGTTTGATGGCCTGGACCTGGATTGGGAATATCCTGGTTCTCACGGGAGCCCCCCAGAGGACAAGCAGAGATTCAGCCTGCTGGTGAAGGAGCTCAATGAAGCATTTCAGAAGGACGCCACAGACAACCGACGTCCCAGACTGCTGCTCTCGGCTGCTGTGGCTTCTGGGAAAGATGAGATCGACAACGGTTATGAGGTTGTGGAGATATCCAAGTACCTGGACTTCATCAGTGTGATGACCTATGACTTCCACGGTCCCTGGGAGAACTTCACTGGACACAACAGCCCGCTGTACCGTGGCTCCAAGGACCAGGGAGAGTTCATCACCTACAACATTGACTTTGTGATGAAGTACTGGCGGGATCTGGGTGCCCCTGTGGACAAGCTGCTCCTGGGATTCCCCACTTATGGGCGCACCTTCCGCCTGCTGTCCAGTGCCAATGGAGTGGGAGCTCCAGCCAATGGCTCTTCGGCAGCTGGGCCCTACACCCGTGAGCCTGGGTTCTGGTCCTACTACGAGATCTGCACATTCCTCGAGAGCACTAAAGTCCAGTGGATTGAGGACCAGCAGGTGCCCTACGCTACCCGAGGGAGAGTGTGGGTGGGCTTCGACAACATGGAAAGCTTCGAGAACAAGGTCCAATGGCTTCAACAGCATAATCTGGGTGGGGCCTTCGTGTGGACCTTGGATCTAGATGACTTCAATGGAGATTTCTGTGCACAGGGCCGCTACCCTCTGATTGAACACCTGCGCAACCTGCTGGGTTTACCCCCGAAACCCACCACCACtaagcccccccccaccaccccaccaAGCAAATTCTGTGATGACAGGCTGGACGGTCTGTACCCCAACCCAGACGACCCCACCACCTACTACCACTGCTATCGCGGCGCCACCTACCTGCAGAAGTGTCAGCCGGGGCTGGTCTTCATCGACGCGTGCAAAACCTGGAAAGGCGTCTCACTGCTGTTCTGAGCTGAGAAAACACCAAGATAGAGGCAGGGGAAAACTAAAAACGAGAAGACAATGACGAAGTTAACTGTCTTAGCAGGTCTGTTCCTGGTGCTGGTCCAGCTAGTCCCTTCCCCAGGCTCAGCCACCAAGCTGGTGTGCTACTTCACCAACTGGTcccagtacaggcctggcactGGAAAGTACCTCCCAGACAATGTGGACCCCCAGCTCTGCACCCACCTGATCTACGCCTTCTCCATCCTCAACTACGCCAACGAAATTGTCACCTACGAGTGGAACGACGAGACGCTGTACCAGTCCTTCAACGGGCTGAAGAACAGAAACCCTCAGTTGAAGACTCTGTTGGCCGTCGGAGGGTGGAACTTTGGGTCAAGCCAGTTCACCATCATGGTCTCCACGCCGACCAACCGGCAGAGATTCATCAAGTCCACCATCAGCTTCCTGCGGACACATGGGTTCGATGGGCTGGACCTGGACTGGGAGTACCCTGGTGCTCGAGGGAGCCCCCCAGAAGACAAGCAGAGATTCACCTTGTTGGTGAAGGAGCTCTTGACCGCCTACGAGGAGGAAAGCAAATCAACCAGGCGTCCCAGACTGTTGCTCACAGCTGCAGTGGCTGCTGGGAAAGGCAACATTGACAATGGCTATGAGATTGCCGAGATCGCCAAGTACCTAGACTTCATCAACGTGATGACCTACGACTTCCACGGAGCCTGGGACCCCTTCACTGGACACAACAGCCCCCTGTACCAAGGCTCCACAGACCAAGGAGAACTCGTCAACTTCAACATTGACTTTGCTATGAAGTACTGGCGGGATCAGGGTGCCCCTGTGGAGAAGCTGTTGATGGGATTCCCCACATATGGGCGCACTTTCCGCCTCACGTCCCCCGAGAATGGAGTGGGGGCTCCTGCCAGTGGCGCCGCCTCGGCTGGCCCGTACACCCGGGAGGCTGGGTTCTGGTCTTACTACGAGATCTGCAATTTTAGACAAGGCGCCACCATTAACTGGATTCAGGACCAGAAGGTGCCCTACGCCACTAAGGGCAATGAATGGGTGGGCTTCGACACCAAGGAGAGCTATGAGACCAAGgtTCGATGGCTTAGGGACAATAAGTTCGGCGGGGCCTTCGTGTGGGCTCTGGATCTGGACGACTTTGCGGGACAGTTCTGCGGAGAAGGGCCCTATCCCCTGATCAGGCACCTGCGCTCCCTGCTCAACCTCCGTAAGTCAACACTGCCCCCACTGCCTTCCACCACCACACTCCCACCTGGAGTCACAACCACCACAAGGAGCACAACCACAAAGACCACCACCACACCCAAACCCGGCTCTGGTTTCTGTGCCGGCAAGCCCGACGGACTGTACCCGAACACAGATGACCGTAACTCCTTCTACAATTGCGCTCATGGCTCGACCTACCCGCAGAAGTGTCATACTGGGCTGGTGTTCAACACGCAGTGCAAGTGCTGCGACTGGCCTTAGAGTAGGACCTGGACTCTCACTTATTCACGTCTTATTCTAGACAACAACAGTAGCACCAATTTAACTCCAAGAAGTCTGAGTCCTCCAACTCTTCCCATCTTAAGAGCTTTAAATATGATCTTATTGTTTTTTGATCACTGTTTTTCGTATGTATTGTCTGCCTGTGGAAATAAAGGGTAAGcattaaactggaaaaacaacttgattaaaaaaactaaagtataGAAGacccaaaagaaaaacatgagcAATATCACTTGTGTCTGAAATTGTCAGTATATGCAACACAAGCTTAAGCGTTCTGCTGTAAAGACGTTATATAAATGGACTGATTGTCAaagtgtgtgtgctttgtttgttttcttgacataataaaataaaatgatagaaaattatttattttacatggttGCTTCTGCTTTCAGAGGACACCATTCTACAC

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013931 True 4687 mRNA 0.54 31 47244382 47274829

Neighbor

gene id symbol gene type direction distance location
AMCG00013930 LOC108435245,LOC108232143,LOC106519305,LOC106567267,LOC105906848,LOC105906847 coding downstream 3578 47230559 ~ 47240804 (-)
AMCG00013928 NA coding downstream 27036 47213599 ~ 47217346 (-)
AMCG00013929 NA coding downstream 31957 47201255 ~ 47212425 (-)
AMCG00013925 NA coding downstream 82381 47151091 ~ 47162001 (-)
AMCG00013926 NA coding downstream 131440 47101579 ~ 47112942 (-)
AMCG00013933 NA coding upstream 842 47275671 ~ 47290041 (-)
AMCG00013934 nfasc coding upstream 48882 47323711 ~ 47368062 (-)
AMCG00013936 NA coding upstream 135539 47410368 ~ 47416382 (-)
AMCG00013935 NA coding upstream 146479 47421308 ~ 47431479 (-)
AMCG00013938 mdm4,LOC107739268,LOC107675838,LOC107656004 coding upstream 277305 47552134 ~ 47564711 (-)
G47766 NA non-coding downstream 17128 47225801 ~ 47227254 (-)
G47718 NA non-coding downstream 123781 47057539 ~ 47120601 (-)
G47717 NA non-coding downstream 169354 47071343 ~ 47075028 (-)
G47661 NA non-coding downstream 405618 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 1005868 46231325 ~ 46238514 (-)
G47807 NA non-coding upstream 220582 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 265734 47540563 ~ 47545591 (-)
G47839 NA non-coding upstream 415016 47689845 ~ 47694894 (-)
G47917 NA non-coding upstream 741732 48016561 ~ 48016838 (-)
G47991 NA non-coding upstream 904438 48179267 ~ 48179685 (-)
AMCG00013932 ruxe,snrpe other downstream 43485 47188595 ~ 47200897 (-)
G47666 NA other downstream 369012 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 933264 46299161 ~ 46311118 (-)
G47501 NA other downstream 1080895 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 1160840 46075429 ~ 46083542 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 590021 47864850 ~ 47868863 (-)
G47896 NA other upstream 692596 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1091214 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1181074 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 1543154 48817983 ~ 48821156 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003435 chia.2 coding NC_007122.7 CM002895.2 24001993 ~ 24008739 (+)
grasscarp (Ctenopharyngodon idella) CI01000058_01453383_01456154 CHIA.2 coding CI01000058 null 1453084 ~ 1456284 (-)