AMCG00013932 (ruxe,snrpe)


Basic Information

Item Value
gene id AMCG00013932
gene name ruxe,snrpe
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47188595 ~ 47200897 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013932
CCGCCATTATAAGCGGAAGTTGGCCGCGGCGTGTGGAGCTCGTTCGCACAGGAAGAAAGAAGCGCGGATTGGCACGCAGAACCAGagagaaaactacagaaaattaaacgtcaaaagaaaagaaacccagCCGTTACAGAGGAACCATGGCGTACCGAGGGCAAGGACAGAAAGTCCAGAAAGTGATGGTGCAGCCCATTAACCTCATCTTCCGCTATCTGCAGAACAGATCCCGGATCCAGGTGTGGTTGTACGAGCAGGTGAACATGCGGATAGAAGGCTGCATCATTggtTTTGATGAATACATGAACTTGGTGCTCGATGATGCCGAGGAGGTCCACATGAAGACGAAAAACAGGAAGCCCCTGGGACGGATCATGTTGAAAGGAGACAACATTACTTTACTGCAGAGTGTAGCTACTTAGTGCTGTCCAGTCTGTCCGTATGGCCCAACTCTCAACACTGCTGCCGTGGTTTTCCAGCGCGAAGAGAACCTGAGCCGGGTTGTTATGTTTTTGTGCGGACAAATTTCTCAATTCAGACCCAGACATACTTGCTGACTTGGCTGCTAAACAGCTTAGTTCTTTCCCCTCCCTGTCCCCTTCCTGTTTTGCAACTTACACTATATagtattttttgtgtatgtgtttccgTATTAAACATCTGGACTGTTTTCTATTACAGGAGTCGGCTTCAGCTCCAGAGTTGGGTGGCGTGGGACGAAGAACCGTGCTGTATAACCTGCCGATCATCTCCGCCGGGCCGCTGTTCTGCG
>TU59572
CCCATAGTGCTTTGCGTTTGGACCGGAAACCCGCCATTATAAGCGGAAGTTGGCCGCGGCGTGTGGAGCTCGTTCGCACAGGAAGAAAGAAGCGCGGATTGGCACGCAGAACCAGagagaaaactacagaaaattaaacgtcaaaagaaaagaaacccagCCGTTACAGAGGAACCATGGCGTACCGAGGGCAAGGACAGAAAGTCCAGAAAGTGATGGTGCAGCCCATTAACCTCATCTTCCGCTATCTGCAGAACAGATCCCGGATCCAGGTGTGGTTGTACGAGCAGGTGAACATGCGGATAGAAGGCTGCATCATTggtTTTGATGAATACATGAACTTGGTGCTCGATGATGCCGAGGAGGTCCACATGAAGACGAAAAACAGGAAGCCCCTGGGACGGATCATGTTGAAAGGAGACAACATTACTTTACTGCAGAGTGTAGCTACTTAGTGCTGTCCAGTCTGTCCGTATGGCCCAACTCTCAACACTGCTGCCGTGGTTTTCCAGCGCGAAGAGAACCTGAGCCGGGTTGTTATGTTTTTGTGCGGACAAATTTCTCAATTCAGACCCAGACATACTTGCTGACTTGGCTGCTAAACAGCTTAGTTCTTTCCCCTCCCTGTCCCCTTCCTGTTTTGCAACTTACACTATATagtattttttgtgtatgtgtttccgTATTAAACATCTGGACTGTTTTCTATTACAG

Function

symbol description
snrpe Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol and nucleus. Predicted to be part of several cellular components, including U2-type spliceosomal complex; methylosome; and spliceosomal snRNP complex. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; hypotrichosis 1; hypotrichosis 11; and lupus nephritis. Orthologous to human SNRPE (small nuclear ribonucleoprotein polypeptide E).

NR:

description
Small nuclear ribonucleoprotein E

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11097 SNRPE, SME; small nuclear ribonucleoprotein E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013932 True 775 mRNA 0.50 6 47188595 47200867
TU59572 False 714 TUCP 0.48 5 47198343 47200897

Neighbor

gene id symbol gene type direction distance location
AMCG00013925 NA coding downstream 26594 47151091 ~ 47162001 (-)
AMCG00013926 NA coding downstream 75653 47101579 ~ 47112942 (-)
AMCG00013922 NA coding downstream 162214 47024851 ~ 47026381 (-)
AMCG00013921 NA coding downstream 170868 47015056 ~ 47017727 (-)
AMCG00013920 NA coding downstream 188381 46995142 ~ 47000214 (-)
AMCG00013929 NA coding upstream 358 47201255 ~ 47212425 (-)
AMCG00013928 NA coding upstream 12702 47213599 ~ 47217346 (-)
AMCG00013930 LOC108435245,LOC108232143,LOC106519305,LOC106567267,LOC105906848,LOC105906847 coding upstream 29662 47230559 ~ 47240804 (-)
AMCG00013931 NA coding upstream 43485 47244382 ~ 47274829 (-)
AMCG00013933 NA coding upstream 74774 47275671 ~ 47290041 (-)
G47718 NA non-coding downstream 67994 47057539 ~ 47120601 (-)
G47717 NA non-coding downstream 113567 47071343 ~ 47075028 (-)
G47661 NA non-coding downstream 349831 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 950081 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 1265681 45921106 ~ 45922914 (-)
G47766 NA non-coding upstream 24904 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 294514 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 339666 47540563 ~ 47545591 (-)
G47839 NA non-coding upstream 488948 47689845 ~ 47694894 (-)
G47917 NA non-coding upstream 815664 48016561 ~ 48016838 (-)
G47666 NA other downstream 313225 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 877477 46299161 ~ 46311118 (-)
G47501 NA other downstream 1025108 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 1105053 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 1214284 45962190 ~ 45974311 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 663953 47864850 ~ 47868863 (-)
G47896 NA other upstream 766528 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1165146 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1255006 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 1617086 48817983 ~ 48821156 (-)

Expression


Co-expression Network