AMCG00013946 (golt1a,got1a,LOC106565310)


Basic Information

Item Value
gene id AMCG00013946
gene name golt1a,got1a,LOC106565310
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47864850 ~ 47868863 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013946
ATGTTCGGGGTGTTGCTGTACTTTGACTCCGTCCTGTTGGCATTTGGAAATGTCCTGTTCCTGAGTGGCCTGGCTGTGATCATTGGCctgaggagaaccttccagttCTTCTTCCAGCGGCAGAAGCTCCGAGCCTCCACCTTCTTCCTGGGTGGCGTGGCCTTGGTGCTGCTGCGCTGGCCCATCATCGGCATGGCAGTTGAGGCCTACGGCTTCGTGCTGCTGTTTAGGAGCTTTTTCCCCGTGGTGTTCGGCTTTCTTGGGTCCTTCATAAACATCCCCTTCATGAACTCG
>TU59752
CAGGAGCAGGGATTTGTGGGATACCGGCACTCCGGCCCTGCCGAGCATCAGGAGGGCACCATGATCGAGGTCACAGATTTTCAGAGTGGGTGTGGGCCTCACGGGGTTCGGCCTCTTCTTTATCATGTTCGGGGTGTTGCTGTACTTTGACTCCGTCCTGTTGGCATTTGGAAATGTCCTGTTCCTGAGTGGCCTGGCTGTGATCATTGGCctgaggagaaccttccagttCTTCTTCCAGCGGCAGAAGCTCCGAGCCTCCACCTTCTTCCTGGGTGGCGTGGCCTTGGTGCTGCTGCGCTGGCCCATCATCGGCATGGCAGTTGAGGCCTACGGCTTCGTGCTGCTGTTTAGGAGCTTTTTCCCCGTGGTGTTCGGCTTTCTTGGGTCCTTCATAAACATCCCCTTCATGAACTCGctttTCACTAAGCTTTCAGGAAGCAGTAACACCATGGTCTGAaccaggaagtaatttgcagtgACAGAAGGTCAGAGACTTTGATCTGTTGCAGTGTCAGGATTTGctcacacattattattactttgagGTTCTAATGGATCCAGACATGCACtatttctgaatattcatgGACTGCTGAGAGAGACACCAGCGTGCGTTACTGTCATGACAAGTATGTCTGGACTGTGTGGCTGAAGAAGACTGGCTGATATCAGGAACCGTACCATCAAGACCGGGATTAGAAGGACCAAACTGGAGGCTGTTTTGGGACGTACCCCTCTTCGACATTTCTAATCTGCAATTTGACTCCTATCCAAATTAAATGTctgtatcaaaatatatattctttttggatgtaatgtattgttaaacaaaaaagaaatccatTCCTTGTTCATAGGTCACTGGTGTCTATAgctcatgcatttttaaagagctGTGGTGACGTCATGCAGAGATATAGGACAGAAAGGCTTGGAGAACGGCCCCAAGTAGGCATTTCCTCTTCAAGGCAGACAGGTTTTAATCCCCTAGTTTGTTATTGATAATTAAAGAGCCTGTTTTTTATGGCGCCTCTGGTCTGGGAGTGAGTCTGATTCATGCCTCGACGCCACCCCGGGGAGACTCTGGCGTAAATAGGAATAGTCTGGGGTCACCAACACAGCTCAGATTGATGTCAGTCGACTGTGGCTCAGTGAGTATGTGTGTCTGGTTTGTTACGTCATCCTGCGATAAAGACTGaagctccacacacacacacaaaaaaaactatttaaaaaaggaaattggaCACCTGTGTGACAATATGtcaaactgcactgcacacacagtccAGCTTAACAAATTGAACTGCACAGTGTGGTGCACCGTACTTGTGCGTGTTTCCGATTTCA

Function

symbol description
golt1a Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human GOLT1A (golgi transport 1A).

NR:

description
PREDICTED: vesicle transport protein GOT1A

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013946 False 294 mRNA 0.56 3 47865992 47868234
TU59752 True 1353 TUCP 0.47 5 47864850 47868863

Neighbor

gene id symbol gene type direction distance location
AMCG00013944 NA coding downstream 7688 47849279 ~ 47857162 (-)
AMCG00013942 NA coding downstream 148855 47709213 ~ 47715995 (-)
AMCG00013940 LOC103386459,LOC108250956 coding downstream 240892 47583585 ~ 47623958 (-)
AMCG00013937 NA coding downstream 293075 47567103 ~ 47571775 (-)
AMCG00013938 mdm4,LOC107739268,LOC107675838,LOC107656004 coding downstream 300139 47552134 ~ 47564711 (-)
AMCG00013945 NA coding upstream 562 47869425 ~ 47907166 (-)
AMCG00013947 slc41a1,LOC107698497,LOC106565625 coding upstream 110726 47979589 ~ 48001071 (-)
AMCG00013949 NA coding upstream 136836 48005699 ~ 48014251 (-)
AMCG00013950 NA coding upstream 153201 48022064 ~ 48024332 (-)
AMCG00013948 NA coding upstream 162529 48031392 ~ 48048066 (-)
G47839 NA non-coding downstream 169956 47689845 ~ 47694894 (-)
G47809 lrrn2,LOC108425772 non-coding downstream 319259 47540563 ~ 47545591 (-)
G47807 NA non-coding downstream 369166 47495411 ~ 47495684 (-)
G47766 NA non-coding downstream 637596 47225801 ~ 47227254 (-)
G47718 NA non-coding downstream 744249 47057539 ~ 47120601 (-)
G47917 NA non-coding upstream 147698 48016561 ~ 48016838 (-)
G47991 NA non-coding upstream 310404 48179267 ~ 48179685 (-)
G47995 NA non-coding upstream 347012 48215875 ~ 48216209 (-)
G48021 NA non-coding upstream 400481 48269344 ~ 48270564 (-)
G48025 NA non-coding upstream 407873 48276736 ~ 48277321 (-)
AMCG00013932 ruxe,snrpe other downstream 663953 47188595 ~ 47200897 (-)
G47666 NA other downstream 989480 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1553732 46299161 ~ 46311118 (-)
G47501 NA other downstream 1701363 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 1781308 46075429 ~ 46083542 (-)
G47896 NA other upstream 98562 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 497180 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 587040 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 949120 48817983 ~ 48821156 (-)
G48373 NA other upstream 1615637 49484500 ~ 49484767 (-)

Expression


Co-expression Network