AMCG00013964


Basic Information

Item Value
gene id AMCG00013964
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48366043 ~ 48375096 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013964
TCAGAGCAGAGTTTGAGTGCAGGAGCTCTCTTCACCCGGGACAGAGGACGACTCCACTGGACAGCACAGGGGTCTAAGGTGGTCCGACTCCTCGTCactgacagagagcagaaggaCAGAACTGACGCTTCAGCGATGGGTGTGGAAGAGACACTGCGCTTACTGGGGGCCACTCTGCTCCTCCTGCCTGGTGTCCTTGGTGGGAGCTGGGCTGTGTGGTATCAATCTGACAAGATCTGTGCTGTGAGAGGCTCCTCTGTGGTCCTGCCCTGTTCATATGATTATccttatgataataataattataattataaatatgaagTGCAGACAGTGATGTGGTGTCACAATAATAGGGACTGTCTTGAATCCTCATATGTGTATCACAGTGGAGGGGGTTCAATCAGCCCTGAATACCCACACAGAGCAGAGTACCTGGGGAATAAACAGAAGGACTGCACTTTGAAGATAAAGGACGTAAGAACAGCTGACAGAGGAGAATATAGATTCAGATTTGAAACCAATCATCCTGGAGGTAAATGGGTTGGTCGGACTGGAgtgactctctctgtctctgAGCTACAGGTGAAGATGAACTCATCAGGAGTGAATGGGACAGTGAGAGAAGGAGACGCTGTGACCCTGACCTGTGACACAGGGAGCTGCTcttccacacagacacagatcacCTGGTTTAAGAATGGCCGGcccatctctcacacacagacacccgccaACACACTGCGCTTGAATCCTGTTTCCTGTACAGACTCTGGAGACTACTCCTGTGCTGTAAGAGAGTATAGAGAGACCCGATCTGAAGGGTTCACTGTGGACGTCTGCTCTGAGTGGGAGACAGTGCTGCTGCCAGCTGTCCTGGGGAGTGCGCTGTCCGTCTGTATTATCACTGCAGTGATTCTCGTCTGTGTCAGAAGGAGGAAGGCTGGTCCATCTGCAGAGGAGAGCAACAGAGACACAGCGGCTCCAGTGAAGGAAGCTACAGGGGACATATACAGCAGTGTGGGCCCATCAGACACCCCAGAGAGAGGACAGGACCCCAGCGCCCCAGCACAGGGGCGGGACGACCTCAACTACGCCACCGTTCTCTTCCAGTCAAAGACAACAGCCAGGCAAGTCTCCAGCTCTCTCTGTCACCATCagggcctgtctgtctgctctaGAAGGACTGTAGCCTCCAGGAACGAACCAGATGACCCCTCAGTTGTCTACAGTGTGCTGAAGAGGCCAACAGAGTGACGGGCTCCATTACATTTCAGGAGAAGCATCTGGACCCTAATCCCACCCTCACCACACTTAAGTACAGGAAACCctactttcccagcattcatcacTTCTCATCCCTGCATTCTCCACCAGCATTGCGGCAAACTCCCTGGCTATTCCAAACTGGGGAGGGAGGCCGGGTCCGATGCCTCGTCCACATGGCCAGGCCATCGACAGATCTACACACACTATGACACTCCATCCTTCAAAGTCTTGTCAGGTTTCCGAAGTGAATTCCCTGCAATCTGCTGTGCGTGGAACTGAAACGTTTGTGTAAAACTCACAGGTCCTGAAATGATCTTTTCAGCCCAGATGATGCAGCAGAAGCTGAGTAATTGAGCACAGTTGCCTCTTGAGACATGAGAAGTTGCTCAGGGACCAAAACTTATTTAGTTCAGAGCCTGATTAGGCTTATCAGGGTGGCAGGGCTGGGACTGATGCTCTGATGAATATGTGAAACTGCAGACGATCACAGAATATTATATTTGCTTTAATATTGGAGATGgtattttgtgtgtaaaatattatgggctggtatttatttttaggttatTTTGCTAACAGTTAATGCAAGAGAAGGATTCCTTTGTAaagatatatattgttaaattgAATAAACTTCAAGTGCAATATGTTTGACACacatttttgatattttgtaaatttgatcaaataatatgtattttaaagcagattttaaaattatttaattgcaaaacgATTTAACTCTGATCTGGGAAGTGTTGGATGCTGGGAGTTGTTGTTTCAACACATATATATGTTGAATGTATCATTGCACATTGCACAGCTGTTCtacttgtgttttaaatgtctttctgatAAGATTAGTAGAGGAGTCTTCACCAGCCTTCATGTTAATGACTGTAAAGAGAGGACAATCCGATGACCATTTAAGGGGCTTTGTCAAAATTGATGACACATTCTTGTGTTTGACTGTTCAAGAGGGCTATTAGAGGAACACTATTCCACTTTCATAGATTATACAGTAAAAATATAGTAGTGCCCTTAGACTGTGTGTGGGGACTGCAGTGTTTATCCGTCTGCAAGGTCTGTGCGTTGGGGGGTGGGGCACATCGTTTGGGTATCTGATATTTTGCCCCATCTCTTCATGTGGTAGCACTAGCTGACATTTGCTGACACAAAACACCATCTGTGTCTAAAACCAGTTTCTTCCATTCCCACAGAAGCACTCTAGTCCTTAAACTAAACTCTTTGATTTCACTTTCactgtttcttttttgctgaCTATTGAATTCCATTGCTGGTCTATGTCGGTGTCCTCTGTGTTCTGTATATTAGCAGTCACAGAAAAAATCCAAGGCAAATATTCTTCCTCATTTACTCCAAATGCCTTAACAGCAGCCTTAATAACTTCTAAGGACATTTCTTCTGTACAAGTCTCTATGAACTCTGCTTCTAACGACAGTCTGGACAATACCGGACGGTGAAATTGAAATCAGCCAATTCAGCTACCAATTGATGGTGTTAATGTTCTGGACCCATAGGCTATCACTCTCATGTTACCCTCCTTATGTTGAGAAAGCACTGCGCTTATCTCCTCCTGGGATGTGTCAGTATGCAGAGTAAAGACAGGGTACCCCATTACTGCAGCAAACAATCAATTCGACTATTCAGAACTAATTGGTGATGCTCTGTCCACTGAACTGGTTGGGACTTCACTACCCAGGATCCATTCTGCCTTTTCTGCCCTTTAGACACTTTGCCCTTTTCTGTTGATGAATGTGCATTTGATGGTACCCCCTGCCCCAGTTTCAGGAGCTCATATAATGGCTATGGAATTCTAGAGAAAACCATTATATACTGTCTATAACATCCCAGAAGCCCTGagatctttttgttttaatgtctgAACCGCAGCTGTGTCTGCAGGGTATATTTTACTGCCCTCTGCCGACACAATTCTCCCCAAATATCTGATTTCTCTTATAAACCAGTCACATTTAACTCCCACTGCTTAACCTTTATAACACCTGTCTGATGTGTTCCTCAAATGACTTGCTGTAGACCAGCACATCATCTAAATCTCTCAGGCCTTTTAAACATTCCCCCATATGTAACCCCTCTACTAAGTatggcatttttttcttcttttacaaAATGAAGGGGTTAAAATGGTTagaaaattgttttattgctgtttgaaagttaataaatgaaaatat
>TU60003
AGGACTGTAGCCTCCAGGAACGAACCAGATGACCCCTCAGTTGTCTACAGTGTGCTGAAGAGGCCAACAGAGTGACGGGCTCCATTACATTTCAGGAGAAGCATCTGGACCCTAATCCCACCCTCACCACACTTAAGTACAGGAAACCctactttcccagcattcatcacTTCTCATCCCTGCATTCTCCACCAGCATTGCGGCAAACTCCCTGGCTATTCCAAACTGGGGAGGGAGGCCGGGTCCGATGCCTCGTCCACATGGCCAGGCCATCGACAGATCTACACACACTATGACACTCCATCCTTCAAAGTCTTGTCAGGTTTCCGAAGTGAATTCCCTGCAATCTGCTGTGCGTGGAACTGAAACGTTTGTGTAAAACTCACAGGTCCTGAAATGATCTTTTCAGCCCAGATGATGCAGCAGAAGCTGAGTAATTGAGCACAGTTGCCTCTTGAGACATGAGAAGTTGCTCAGGGACCAAAACTTATTTAGTTCAGAGCCTGATTAGGCTTATCAGGGTGGCAGGGCTGGGACTGATGCTCTGATGAATATGTGAAACTGCAGACGATCACAGAATATTATATTTGCTTTAATATTGGAGATGgtattttgtgtgtaaaatattatgggctggtatttatttttaggttatTTTGCTAACAGTTAATGCAAGAGAAGGATTCCTTTGTAaagatatatattgttaaattgAATAAACTTCAAGTGCAATATGTTTGACACacatttttgatattttgtaaatttgatcaaataatatgtattttaaagcagattttaaaattatttaattgcaaaacgATTTAACTCTGATCTGGGAAGTGTTGGATGCTGGGAGTTGTTGTTTCAACACATATATATGTTGAATGTATCATTGCACATTGCACAGCTGTTCtacttgtgttttaaatgtctttctgatAAGATTAGTAGAGGAGTCTTCACCAGCCTTCATGTTAATGACTGTAAAGAGAGGACAATCCGATGACCATTTAAGGGGCTTTGTCAAAATTGATGACACATTCTTGTGTTTGACTGTTCAAGAGGGCTATTAGAGGAACACTATTCCACTTTCATAGATTATACAGTAAAAATATAGTAGTGCCCTTAGACTGTGTGTGGGGACTGCAGTGTTTATCCGTCTGCAAGGTCTGTGCGTTGGGGGGTGGGGCACATCGTTTGGGTATCTGATATTTTGCCCCATCTCTTCATGTGGTAGCACTAGCTGACATTTGCTGACACAAAACACCATCTGTGTCTAAAACCAGTTTCTTCCATTCCCACAGAAGCACTCTAGTCCTTAAACTAAACTCTTTGATTTCACTTTCactgtttcttttttgctgaCTATTGAATTCCATTGCTGGTCTATGTCGGTGTCCTCTGTGTTCTGTATATTAGCAGTCACAGAAAAAATCCAAGGCAAATATTCTTCCTCATTTACTCCAAATGCCTTAACAGCAGCCTTAATAACTTCTAAGGACATTTCTTCTGTACAAGTCTCTATGAACTCTGCTTCTAACGACAGTCTGGACAATACCGGACGGTGAAATTGAAATCAGCCAATTCAGCTACCAATTGATGGTGTTAATGTTCTGGACCCATAGGCTATCACTCTCATGTTACCCTCCTTATGTTGAGAAAGCACTGCGCTTATCTCCTCCTGGGATGTGTCAGTATGCAGAGTAAAGACAGGGTACCCCATTACTGCAGCAAACAATCAATTCGACTATTCAGAACTAATTGGTGATGCTCTGTCCACTGAACTGGTTGGGACTTCACTACCCAGGATCCATTCTGCCTTTTCTGCCCTTTAGACACTTTGCCCTTTTCTGTTGATGAATGTGCATTTGATGGTACCCCCTGCCCCAGTTTCAGGAGCTCATATAATGGCTATGGAATTCTAGAGAAAACCATTATATACTGTCTATAACATCCCAGAAGCCCTGagatctttttgttttaatgtctgAACCGCAGCTGTGTCTGCAGGGTATATTTTACTGCCCTCTGCCGACACAATTCTCCCCAAATATCTGATTTCTCTTATAAACCAGTCACATTTGCTCTCCCACTGCTTAACCTTTATAACACCTGTCTGATGTGTTCCTCAAATGACTTGCTGTAGACCAGCACATCATCTAAATCTCTCAGGCCTTTTAAACATTCCCCCATATGTAACCCCTCTACTAAGTatggcatttttttcttcttttacaaAATGAAGGGGTTAAAATGGTTagaaaattgttttattgctgtttgaaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013964 True 3485 mRNA 0.45 9 48366043 48375096
TU60003 False 2291 lncRNA 0.41 2 48366059 48368369

Neighbor

gene id symbol gene type direction distance location
AMCG00013965 NA coding downstream 101670 48261347 ~ 48264373 (-)
AMCG00013959 NA coding downstream 138932 48220232 ~ 48227111 (-)
AMCG00013957 NA coding downstream 154015 48202579 ~ 48212028 (-)
AMCG00013958 NA coding downstream 176741 48186287 ~ 48189302 (-)
AMCG00013956 NA coding downstream 185466 48179895 ~ 48180577 (-)
AMCG00013966 NA coding upstream 53807 48428903 ~ 48439128 (-)
AMCG00013972 NA coding upstream 141837 48516933 ~ 48520737 (-)
AMCG00013973 NA coding upstream 147454 48522550 ~ 48524089 (-)
AMCG00013974 rbm15,LOC102786942 coding upstream 210535 48585631 ~ 48588321 (-)
AMCG00013976 NA coding upstream 276193 48651289 ~ 48663453 (-)
G48044 NA non-coding downstream 21550 48308564 ~ 48344493 (-)
G48047 NA non-coding downstream 26433 48329718 ~ 48339610 (-)
G48025 NA non-coding downstream 88722 48276736 ~ 48277321 (-)
G48021 NA non-coding downstream 95479 48269344 ~ 48270564 (-)
G47995 NA non-coding downstream 149834 48215875 ~ 48216209 (-)
G48082 NA non-coding upstream 86430 48461526 ~ 48498711 (-)
G48086 NA non-coding upstream 104352 48479448 ~ 48484310 (-)
G48092 NA non-coding upstream 130775 48505871 ~ 48506136 (-)
G48106 NA non-coding upstream 170141 48545237 ~ 48546275 (-)
G48175 NA non-coding upstream 270094 48645190 ~ 48651229 (-)
G47896 NA other downstream 391128 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 497180 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1165146 47188595 ~ 47200897 (-)
G47666 NA other downstream 1490673 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 2054925 46299161 ~ 46311118 (-)
AMCG00013967 NA other upstream 80807 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 442887 48817983 ~ 48821156 (-)
G48373 NA other upstream 1109404 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 1119631 49494727 ~ 49498630 (-)
G48506 NA other upstream 1344669 49719765 ~ 49721526 (-)

Expression


Co-expression Network