AMCG00013974 (rbm15,LOC102786942)


Basic Information

Item Value
gene id AMCG00013974
gene name rbm15,LOC102786942
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48585631 ~ 48588321 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013974
ATGAAAGGCAAAGAGCGGTCGCCCGTGAAGAAGCGCTCCCGGGCCCTGGACGATATCCGAGACCGGGGAGGGAGCCACCCGGCCAGCAAAAAGATCGGGGCCCTGTCCGTGTCCGGGGGCAGCAACAACGGCAACAGCTCGGCCAAGAGCGACGGCGGCTCGGCGCGGAGGAGCCTGCTGGCCGAGAAGCGGGACAGCCGGGACTTCGATGGCCACGTTTCCAGCCGCGCGGGGGGCAACCACAGCTACGccaccgccgccgccgccgccgccgccgccggcTCCAGCAGCAAGAACCACGGCAGCCTGGCGCTGGatgccgccgccgccgccgccgccgcccgcAGCACCTCCCGGGGCGGCGAACCCCGGGCCCCGCCGCTGGCCCCCGCCGAGAGCGAGTACAAGACGCTGAAGATCAGCGAGCTGGGCTCCCAGCTGAGCGACGAGGAGGTGGAGGACGGGCTGTTCCACGAGTTCAAGAAGTTCGGCGACGTGAGCGTGAAGATCAGCCGCGCGGGCGACGAGCGCGTGGCCTTCGTCAACTTCCGCCGGCCCGAGGACGCGCGCGCCGCCAAGCATGCGCGGGGCCGCCTGGTGCTGTACGACCGGCCGCTGAAGATCGAGGCGGTTTACATCAACCGCCGCAGGAGCCGTTCGCCCATCGAGAAGGACGCCTACGCGGCCGTGCCGGGCCACCGACACCTGCACGCCCAGCGGCCCCTGTCCCCCACGGGGCTGGGCTACCGGGACTACAGACTGCAGCAGCTGGCCCTGGGCCGcctgccccctcccccgccTCCACCCCTGCCCCGGGACCTGGAGCGCGAGCGGGAGTACGCCTTCTACGAGGCCCGGGCGCGGCCGGCCTACAACATCGCCGAGCGCGCCGCCGCCTTCCGCGAGGAGGAGCTCATCTCGCCCGAGGACGACCAGCGCGCCAACCGCACCCTGTTTCTGGGCAACTTGGACATCACGGTCACCGAGAGCGACCTGCGCCGCGCCTTCGACCGCTTCGGCGTCATCACCGAGGTGGACATCAAGCGGCCCACGCGAGGCCAGACCAGCACCTACGGCTTCCTGAAGTTCGAGAACCTGGACATGGCGCACCGGGCCAAGATCAGCATGTCGGGGAAAGTGGTCTGCCGCAACCCCATAAAGATTGGCTACGGCAAGGCCACACCCACCACGCGCCTGTGGGTGGGGGGTCTGGGGCCCTGGGTACCGCTGGCCGCGCTGGCGAGGGAGTTCGACCGCTTCGGCACAATTCGGACTATAGACTACAGGAAGGGCGACTCGTGGGCTTACATCCAGTACGAGAGCCTGGACGCGGCGCAGGCGGCCTGCACGCACATGCGCGGCTTCCCCCTGGGTGGCCCAGACCGGCGGCTGCGCGTGGACTTTGCCGACACCGAGCACCGCTACCAGCAGCCCTATCTCCAGCCGCTGCCCCTGCCGCACTACGACATCGTGGCCGAGTCCTTCGTGCACCGCCCCACCCCGGAGTCCCTGAGGGTCCGGGAGAGGACTCCACCACCGCTGCACTTCCGGGAGCGAGAGCTGTACCCAGCCGCCGAGTGGGTCGCCCCTCCGGTCCGGGACAGGGTGCGGCCAGCTGCCTTCGAGCCTCTAGAGCACCTGGAGCGTGAGCGCCGGCCGCGGGAGGCCTGGTCGCTCGAGAGGGAGCGTGAGCTGCAGACCCGGGACGCTACACGCAAACGGCGGCTGCTGGAGGACAGCCGGCACCTGGAGCGCTCCCCCGACAGCAGTGAGCGCACGCGCCGGCGGCACTGCCCCTCCCTGGAGCGCAGCCCTGGCGGGAGCAGCGGAAGGGACGGCGGCCGCTACAGTGACTCTGAGCGGCCCCTGCGCCCCGACAGACCCTCCCCGGTGCGCGACCGCCGCGCCAGCCTTGAGCGTGCCGCCGGGGAGAAGCTGCGCGGCGTTGAGAGGCTGAAGGGCCTCACCCTGGCAGAGGCTGCGGCCGTGGCGGCGGCGGCTGCTGCAGTCGGCGGCGGTGGAGGAGGCGGCCTCGGCGCGGGGGCCCTGGAGCGAGAGCGCAAACGTAAGATAAGCGAGACTTGTAAGAGCCCAGCCAAGAAGGAGGAACAGCAACGCTTTGACTCCGCCGGCTCCTCCAAGGGCAGTGCAGCACTGAAGCAGGAGGCTGGGCAGAAGCTGTCGCTGGCCTGGCAGGGCATGCTGCTGCTGAAGAACAGCAACTTCCCCTCCAACATGCACCTGCTGGAGGGCGACCTGGGCGTGGCCACCAGCCTGCTCGTTGACGGCTCCACGGGTGGCAAGGTGGCCCAGCTGAAGATCACTCAGCGCCTGCGGCTGGACCAGCCCAAGCTGGACGAGGTGACCCGGCGGATCAAGGTGGCGGGACCCAGCGGCTACTCCATCCTCCTGGCGGTGCCGGGGACCTCCGAGGGCAGCGCGTCGGTGTCCGAGCAAGCGTCGTCTACCCAGAGGCCACTGCGCAACCTGGTGTCTTACCTGAAGCAGAAGCAGGCGGCCGGCGTCATCAGCCTCCCCGTGGGGGGCAGCCGAGACAAGGACAGCGCGGGAGTCCTGCACGCCTTCCCCCCCTGTGATTTCTCTCAGCAGTTCTTGGATTCCTCTGCCAAAGCTCTTGCCAGGACAGAAGAGGACTACCTGGTGATGATCATTGTGCGTGGGGCGTCGTAA

Function

symbol description
rbm15 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to human RBM15 (RNA binding motif protein 15).

NR:

description
PREDICTED: putative RNA-binding protein 15

GO: NA

KEGG:

id description
K13190 RBM15; RNA-binding protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013974 True 2691 mRNA 0.70 1 48585631 48588321

Neighbor

gene id symbol gene type direction distance location
AMCG00013973 NA coding downstream 61542 48522550 ~ 48524089 (-)
AMCG00013972 NA coding downstream 64894 48516933 ~ 48520737 (-)
AMCG00013966 NA coding downstream 146503 48428903 ~ 48439128 (-)
AMCG00013965 NA coding downstream 321258 48261347 ~ 48264373 (-)
AMCG00013959 NA coding downstream 358520 48220232 ~ 48227111 (-)
AMCG00013976 NA coding upstream 62968 48651289 ~ 48663453 (-)
AMCG00013979 LOC106565664 coding upstream 157572 48745893 ~ 48754827 (-)
AMCG00013980 LOC100690806,LOC102789655 coding upstream 169265 48757586 ~ 48776138 (-)
AMCG00013981 nfya coding upstream 188179 48776500 ~ 48785225 (-)
AMCG00013987 NA coding upstream 204053 48792374 ~ 48792875 (-)
G48106 NA non-coding downstream 39356 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 79495 48505871 ~ 48506136 (-)
G48082 NA non-coding downstream 86920 48461526 ~ 48498711 (-)
G48086 NA non-coding downstream 101321 48479448 ~ 48484310 (-)
G48044 NA non-coding downstream 241138 48308564 ~ 48344493 (-)
G48175 NA non-coding upstream 56869 48645190 ~ 48651229 (-)
G48275 NA non-coding upstream 438963 49027284 ~ 49050432 (-)
G48363 NA non-coding upstream 765371 49353692 ~ 49354535 (-)
G48370 NA non-coding upstream 864712 49453033 ~ 49453872 (-)
G48398 NA non-coding upstream 949407 49537728 ~ 49595073 (-)
AMCG00013967 NA other downstream 106054 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 210535 48366043 ~ 48375096 (-)
G47896 NA other downstream 610716 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 716768 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1384734 47188595 ~ 47200897 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 229662 48817983 ~ 48821156 (-)
G48373 NA other upstream 896179 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 906406 49494727 ~ 49498630 (-)
G48506 NA other upstream 1131444 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 1133425 49721746 ~ 49724237 (-)

Expression


Co-expression Network