AMCG00013976


Basic Information

Item Value
gene id AMCG00013976
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48651289 ~ 48663453 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013976
ATGCCTAAGAACAGCAAAGTGACGCAGCGCGAGCACAGCAATGAGCACGTCACCGAGTCCGTGGCCGACCTGCTGGCGCACGAGGAGCCACTGGATTACAAGAGCAGCGTGCTGAACGTGGACAGCGCTGCCCCACCCAAGGGCAAGCCCACGGACGATAAGCCCAGCTTTAACAGGGATGGAAACCTACAGTCAGTGGTGAAGGTGACCCAGTCCCCAGCCCAACCCAAACTCCTGCCATATTGTATCCCTAAACACCACCAGCAAGgtgcCTATCTGGTCCCCTATTTCatcctcctcatcatcatcGGGATCCCGCTGTTCTTCCTGGAGCTGGCAGTGGGGCAGCGCATCCGCCGCGGGAGCATCGGCGTCTGGAACTACGTGTGTCCGCGGCTCGGCGGCATTGGCTTCTCCAGCTTAATAGTGAgcgagggggaggggggtgaggTGGTGTGGGATGAGTGGGTGAGGCGGGAAGTGTGCGGCTTCGTGGGCCTTTACTACAACGTCATCATTGGCTGGAGCATCTTCTACTTCTTCCAGTCCTTCCAGTACCCGCTGCCCTGGAGTGAGTGCCCGCTGAAGAGGAACGGCTCCCATGCCATTGTGGAGCCGGAGTGTGAGAAGAGCTCGGCCACCACCTACTTCTGGTACCGCGAGACCCTGAACATCTCCAGCTCCATCTCGGACAGTGGTGGCCTGAACTGGAAGATGACGCTCTCCCTGCTGGCCGCCTGGTGCATCGTGTGCCTGGCGGTCATCAAGGGCATCCAGTCCTCGGGCAAGgTGATGTACTTCAGCTCCCTGTTCCCCTATGTGGTCCTGATCTGCTTCCTGGTGCGAGGGCTGCTGCTGCGCGGGGCCATAGACGGCATCGCTCACATGTTCACCCCCAAGCTGGAGAAGATGCTGGAGCCCCAGGTGTGGCGAGAGGCGGCCACGCAGGTGTTCTTTGCCCTGGGACTGGGCTTTGGGGGGGTGATCGCCTTCTCTAGCTACAACAAGCAGGACAACAATTGCCACTTCGATGCCACCCTGGTGTCCATCATCAACTTCATCACCTCTGTGCTGGCCACGCTGGTGGTCTTTGCTGTGCTGGGGTTCAAGGCCAACATCATGAATGAGAAGTGCGTTGTCGAGAATGCGGAGAAGATCCTGGGCTATCTGAACTCCAACGTGCTGAGCCATGACCTCATCCCCCCACACGTCAACTTCTCCCACCTGACCACCTCTGACTACGCCGAGATGTACGGCGTGATCAAGACAGTGCGGGAGGATAACTTTGCAGAGCTGGGCCTGGACGCCTGCCAGCTGGAGGATGAGCTGAACAAGGCAGTGCAGGGCACTGGACTGGCCTTCATCGCATTCACGGAGGCCATGACCCACTTCCCTGCCTCCCCCTTCTGGTCTGTCATGTTCTTCTTCATGCTCATCAACCTGGGCCTGGGCAGCATGATCGGCACCATGGAGGGCATCACCACGCCCATCGTGGACACCTTCAAAGTGCGCAAGGAGATCTTCACAGGTGAGCAGGCCGGTGGCAAGCGGGGCCACCCTCTGGGCACCCTCTGGGCGCTGGGCCGCACCTTGGTGCCAAAAGCCTCTCAGCATTCGGGGAACTATTTTGTTACCATGTTTGATGACTACTCCGCCGGCCTGCCGCTGACCATCGTGGTGATCCTGGAGAACATCTCCGTGGCCTGGATCTATGGCACCAAGAGGAGTGTTGTGCGTAGGGACCACAGGGGAGACATGCTGGGCTTCCGCCCCTACTACTTCTACTTCTACATGTGGAAGTACGTGTCCCCGCTATGCCTCTCTGTCCTCATCGTGGCCACCATCATCGAGATGGCCATCAGCCCACCGGGGTACAACGCCTGGGTCCAGGAGCTGGCGAGTGAGCGTTTCCAGAGTTACCCCCCCTGGGCCCTGGCCATGTGCTTTGCCCTGATCGTGGTGGCCATGCTGCCGCTGCCCATCGTCTTCATCGGGCGGCAGTTCCACCTAGTGTCGGACGGCTCCAACAAGCTCTCCGTCTCCTACAAGAAGGGCTGCATGATGAAGGACATGTCCAACCTGGAGGACAACGACGAGACGCGCTTCATCCTCAGCAAGAACCCCAGCGAGGCGCCCTCCCCCATGCCCACACACCGCTCCTACCTCGGCCCCGGCAGCACCTCCCCCCTGGAGACCACCAATGCTGCCCCCAACAGTCGCTATGGTACGGGCTACCTGATGGCCACCACGCCTGAGTCCGAGCTATGA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013976 True 2268 mRNA 0.60 13 48651289 48663453

Neighbor

gene id symbol gene type direction distance location
AMCG00013974 rbm15,LOC102786942 coding downstream 62968 48585631 ~ 48588321 (-)
AMCG00013973 NA coding downstream 127200 48522550 ~ 48524089 (-)
AMCG00013972 NA coding downstream 130552 48516933 ~ 48520737 (-)
AMCG00013966 NA coding downstream 212161 48428903 ~ 48439128 (-)
AMCG00013965 NA coding downstream 386916 48261347 ~ 48264373 (-)
AMCG00013979 LOC106565664 coding upstream 82440 48745893 ~ 48754827 (-)
AMCG00013980 LOC100690806,LOC102789655 coding upstream 94133 48757586 ~ 48776138 (-)
AMCG00013981 nfya coding upstream 113047 48776500 ~ 48785225 (-)
AMCG00013987 NA coding upstream 128921 48792374 ~ 48792875 (-)
AMCG00013986 NA coding upstream 131766 48795219 ~ 48807587 (-)
G48175 NA non-coding downstream 60 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 105014 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 145153 48505871 ~ 48506136 (-)
G48082 NA non-coding downstream 152578 48461526 ~ 48498711 (-)
G48086 NA non-coding downstream 166979 48479448 ~ 48484310 (-)
G48275 NA non-coding upstream 363831 49027284 ~ 49050432 (-)
G48363 NA non-coding upstream 690239 49353692 ~ 49354535 (-)
G48370 NA non-coding upstream 789580 49453033 ~ 49453872 (-)
G48398 NA non-coding upstream 874275 49537728 ~ 49595073 (-)
G48430 NA non-coding upstream 950243 49613696 ~ 49613974 (-)
AMCG00013967 NA other downstream 171712 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 276193 48366043 ~ 48375096 (-)
G47896 NA other downstream 676374 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 782426 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1450392 47188595 ~ 47200897 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 154530 48817983 ~ 48821156 (-)
G48373 NA other upstream 821047 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 831274 49494727 ~ 49498630 (-)
G48506 NA other upstream 1056312 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 1058293 49721746 ~ 49724237 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000052_01976377_01991987 SLC6A17 coding CI01000052 null 1976080 ~ 1992234 (-)