AMCG00013980 (LOC100690806,LOC102789655)


Basic Information

Item Value
gene id AMCG00013980
gene name LOC100690806,LOC102789655
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48757586 ~ 48776138 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013980
GCCTGGGATGTGCGGAGTGGATGCGCAGAaccggggagagagagagagagaggtggtgcGAAACCAGGCTGCAGTGACGACAGCATCCATAATTAAAGAGGAGATACAAGTGCAGGAAAGACACCCTGACACACATGAGTGCCGTCGAGCTGCCCGCCTGCAGGAACACACTGTGCTGCCAATAAGGGCACCGACTGCCTGGCACCGCGCACTCAGCGCCTCAGCGCCCGCTGTACCGAGCCATATCGGGCGCAATGTCGGACTCGGCCGGGGACGCGAAGTTGGAAGTGAAGCAGGCCAGCAAAGAAGTGAAGGAGAGCGAGAATGTGGCGGAGAAATACTCGGCCATGACCGTGAGCAAGAACAGCGAGATGTCCAGGAGCGACCTGTCCGCCGCCTTCAGCGCCGTCACCTCCCACAAGCCCGTCAAAAAGCAAATCCAGTTCGCAGAGGACAAGCAGGAGTTCAGCCGCTTCCCCACGAAGGCGGGCCGGCGCTCGCTTTCTGACGACGAGACATCCCCGCGGGACAAGGTGCAGAGCAACTCCAAGGGCGGCAGCGACTTCTGCGTCAAGAACATCAAGCAGGCGGAGTTCGGCCGGCGTGAGATAGAGATCGCCGAGCAGGACATGTCAGCACTGATCTCTCTGAGGAAGAGGGCGCAGGGCGAGAAGCCGCTGGCTGGGGCCAAAATCGTGGGCTGCACTCACATCACTGCCCAGACAGCGGTGCTGGACGACGGGGGGGACCTGACACACTGGGTGTACAAGAAGTACCCCAACGTGTTCAAGAAGATCCGCGGCATCGTGGAGGAGAGCGTGACAGGGGTGCACCGCCTTTACCAGCTGTCCAAGGCCGGCAAGCTGTGCGTCCCGGCGATGAACGTCAACGACTCAGTGACCAAGCAGAAGTTTGACAACCTGTACTGCTGCCGGGAGTCCATCCTAGACGGTTTGAAGAGAACCACAGACGTGATGTTCGGGGGCAAGCAGGTGGTGGTGTGTGGATACGGAGAGGTGGGGAAGGGCTGCTGTGCTGCGCTGAAGGCCCTGGGCGCCATTGTGTGCATCACCGAGATCGACCCCATCTGCGCCCTGCAGGCCTGCATGGACGGCTTCCGGGTGGTCAAGCTGAACGAGGTGATCCGCCAGGTGGACGTGGTCATCACCTGCACAGGCAATAAGAACGTGGTGACCCGGGACCAGCTGGACCGCATGAAGAACGGCTGCATCGTGTGCAACATGGGCCACTCCAACACCGAGATCGACGTGGCCAGCCTGCGCACGCCAGAGCTCACCTGGGAGAGAGTGCGCTCGCAGGTGGACCACGTCATCTGGCCCGATGGGAAGAGGGTTGTCCTGCTGGCCGAGGGCCGCCTGCTGAACCTGAGCTGCTCCACGGTCCCCACGTTTGTCCTGTCCATCACAGCCACCACACAGGTGAGCGAGAGACAGAGCCCCCCGAgtcactggactggactgcctGTGGGcgtccttGCGCTGGCGCTGATTGAGCTGTACAACGCTCCCGAGGGACGCTACAAACAGGACGTGTATCTGCTGCCCAAGAAGATGGACGAGTATGTTGCCAGCCTGCATCTGCCCACCTTCGACGCCCACCTGACAGAGCTGTCTGACGAGCAGGCCAAGTACCTGGGCCTCAACAAGAACGGGCCCTTCAAACCCAACTACTACAGATACTAGTTGCGGACAATGGCAGTAAAGTCCAGACGACCACCATGTCTACGGAGTGGGGGGGTCCCAGGCGGAGGGGGCTCGGAAGACCTCGAGGGGGAAATACTCCGACAACAAACGAGCGagagattttacattttcatttcatttttagtttttcatttcatttcatttttgtactttgtttcaCTTCTCACCCCCCCCACCGGCCCCCTCGGACTCTGCAGCCGCTTCAGCCCCCCCGCTAAACACTTTATCTTCTATCGTTTATTTGTTAAtccactttaaaacaaaagcaaaattatataatttgaaagaCAATCAGAAATGTAGGCTGTTtgtgaaataacttgaaatggtGCCAAGCAATCTGTTAGTGGAGGTTCTGATCCAGTTCgatttttcttgtattattatgattattctcGTTTAATGTCTTTGCACTTTCAAAGCTCAACACACATTCCACACTGAGAGACTGTGGGACAGAGGTCTGGACCGCTGACCCCCTGCAGAGCAGACTCTGACTATTATTACTGTGATTGTCATGATTGTTATTCATATTGCACAGATCACTTGAGCTGTGCTTCTGGATGAGGGCGCCACGGTGTGCAACGGCAACCTTTACTAATTACACAATAACAGGTATTTTGCTTAAATAGTTGTTGCGCTGTGTGGGGTTGGTGTAGTGCTTATTACTGCTGTGTccatgtctgtctctgtgtgtgtctgtttgtccggctgtgtgtgtctgtctggctgtctgtctgtgtgagtgtgtgtgtgtgtgtgtgtgtctgtctggctgtctgtctgtgtgagtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtcaggcTGGTTGTCTGACTCCAGCCCTCTGTCCCACCCACCCTCTTAGGCTCTCTGTGATGTCATAGTAGGCATCTAGACCACAGACATTCTGGACGATTTATTTTAGCGTGGTATCTGGCGAATCGATGCCCCGTTTACAATGgggtttttttaaatcttttttaataatttgacgTGTGTCttttgattgttattattttgtttctgtgccGAATCCTCTCTGACCTTATATGTCCTTAATGTCCTTCCTCGCCGCCGTCTGTTCCCCCACACTGCTTCCCGACACTCGCTGCACCAGcgcacattttaaacagtttaaacaaaaggaacaaaaagattaataataaattatacattctaaatatatttatatttgaaaaaatagcCATTCAAAATGAAGAGCAATGAGGTTAGATGGGTAGATATAGACAGATAGAGTAAGTAGGCGAGTTGGAAATATTCCTAATTGTTCTGagataaaaaagtgaaatggaCGAGTTTAAGgacaaaaagtgttttaatctTCAGACTTGAACTGTAAAGGTGTCTTCTAGCTGTTGAGTTGCTCTGCTGTGTGTCGCCCAGAGCgctgtggagggggggggggttgagcTTGACCTTTCACCTCTCAGGTCCAAGCAGGGGTGTCAGTCCATGCCTGTGTTGCCATATACGTAGATTAATAAGATGAACTAATTATTGAATTGAGTTGAGCAGCTGAGAGTTGGGGGGGGTACGATCCACACCTAAGGCCTTTAAGCAGCAGGAGTTGTGCGGCCCCAGCCTCAGCTGCCACAACCGAGACCAACCACAAACCAGTCGACCAATCATGTGGCTCAGACCACATACTCAACACAGGGACCCCAGGCTGAGGCCCCAGGGGTACAAGCTGTGTGGCTGTGCCTTTCTGACCCCACCaaccctgtccctgtcccctgTCTGTCTCCTCCCTCTAGTGCCCTGTCTGTCCCCTGTCCTCTGTCTCCTCCCCCTAGTGCCCTGTCTGCCCTTCACGTCCTGTTTTGGAGTCTGTGGAAGCATCCTGGTTGTTTCACATCTCCATAGCTGCGACCCCCCGTGCAATAGTCATTAACTGACTGTTTGCTCTTCTTTCTGTTTGTAAcggtgtattttattaaacagtttCTGTTCTTCCGTCTCTGAGACCCGTGTGACAGGCCCCTCCCCTCCCCGCTTGCAGAGTTGCTCAGATTGAATCCAAACATTGAGCCGCCTACGCACAGAACCCGCAGAGACTCGGGAGCAGCTGCGGTGGTTCGGTCCGGATGCACTCGCTCCTTCCCATAAGCATCACTGCTGGTAGCTTTCTTGTGCTgctgggccgggccgggccCTGCTCTCTGGCTCCAGTGCTTCTCTCGGCTCCTGCTGGTGTCAAACCAAaacgcacagacagacagacagacagacaatgcCATTAAAAACAGCTGATAATTAATCTTTGTTCTTGCCTTGAAGTGCACACTGACTGGGGGGGAGGAGCTCGCAAGGCCAGCTATTTTtatatcatttaatttaattctgttgaagaaaagaaaatggtagAAATGTCAAAgatttttaaagaacagaagttgttttgtgtttgtttttcagagggTTAGGTTTGTGTGTCGGACATTGTAGTGCGTGGCTCTTGTGAGTTCCCCCCGGTGTGCATTGTTCTCTGGTGGTTTTCACAGAGACGGGCAATCGCTACAGCCACTGTGACCGACGACACTCGATTGCCTTGGTGTCGTTATTTTGCTATGGTTCCTTTTTACCTGAATGATTTCATATGGGATCTTAGTGCAGCCCTGCTCGGGCAAATGTAGTGTTAATGTTGATCATTtgcttaaaacaaattataacgTTTTTAATTAGGAGCCATTGGCCTGACGAATGCAAACTCCACAGTCGACTGTGACGTGTTCTATGATTTGTGTGTGatgatgatttttattattatttctctgaaGATGGACTATCACCCTCTCATTCCAGTATATCTTTCCAttggtttttaaatgaaaaaaagcaacaatcTAACCTTCCATTTCCATCatgaaataaaaggaaactgagtgaagaaaaaaaaagagaatacaaATTTTGGAGATGTGCATGGAAGCATAAGTCACTTATTTTTAAAGTCATGATTATTGTCGCCATCTTTTCCAATAAAGAAATCAATGAGaattaaaaatcacttttgtGTTGGTGTAAAATCACATACTGTCACATTAAAACCGAAACTTTCAAAGTCCA

Function

NR:

description
PREDICTED: adenosylhomocysteinase 2

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0004013 adenosylhomocysteinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013980 True 4830 mRNA 0.51 15 48757586 48776138

Neighbor

gene id symbol gene type direction distance location
AMCG00013979 LOC106565664 coding downstream 2759 48745893 ~ 48754827 (-)
AMCG00013976 NA coding downstream 94133 48651289 ~ 48663453 (-)
AMCG00013974 rbm15,LOC102786942 coding downstream 169265 48585631 ~ 48588321 (-)
AMCG00013973 NA coding downstream 233497 48522550 ~ 48524089 (-)
AMCG00013972 NA coding downstream 236849 48516933 ~ 48520737 (-)
AMCG00013981 nfya coding upstream 362 48776500 ~ 48785225 (-)
AMCG00013987 NA coding upstream 16236 48792374 ~ 48792875 (-)
AMCG00013986 NA coding upstream 19081 48795219 ~ 48807587 (-)
AMCG00013990 NA coding upstream 75150 48851288 ~ 48852970 (-)
AMCG00013994 gnat2,LOC107591823,LOC102304204,LOC100703259,LOC102200492,LOC101158106,LOC103367853 coding upstream 142259 48918397 ~ 48925913 (-)
G48175 NA non-coding downstream 106357 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 211311 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 251450 48505871 ~ 48506136 (-)
G48082 NA non-coding downstream 258875 48461526 ~ 48498711 (-)
G48275 NA non-coding upstream 251146 49027284 ~ 49050432 (-)
G48363 NA non-coding upstream 577554 49353692 ~ 49354535 (-)
G48370 NA non-coding upstream 676895 49453033 ~ 49453872 (-)
G48398 NA non-coding upstream 761590 49537728 ~ 49595073 (-)
G48430 NA non-coding upstream 837558 49613696 ~ 49613974 (-)
AMCG00013967 NA other downstream 278009 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 382490 48366043 ~ 48375096 (-)
G47896 NA other downstream 782671 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 888723 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1556689 47188595 ~ 47200897 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 41845 48817983 ~ 48821156 (-)
G48373 NA other upstream 708362 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 718589 49494727 ~ 49498630 (-)
G48506 NA other upstream 943627 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 945608 49721746 ~ 49724237 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location