AMCG00013981 (nfya)


Basic Information

Item Value
gene id AMCG00013981
gene name nfya
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48776500 ~ 48785225 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013981
GACCGCGCTGCGCCATTTTGTCCCCACGCCGTGCGCTCAGTGATTGGGTTCTGGGCATCGGTACTGGAGCCAATCAGAGGGGAACCGGGGCGGCGGAGAGACGAACCAAGCCATTTTTAACGAGAAGTGAAGCCAGACCAGGACCTGAGTATGGAGCAGTACACCACCGCCAGTAACAGCAGCGGAGAGCAGATCGTGGTGCAGACAGCCACAGGACAGATCCAGCAACAGGGCACGGTGACCACAGTGCAGCTGCAGACCGAGCCGCAGGTGGCTTCGGCCTCCGCCCAGCAGGTCCAGACTCTCCAGGTGCAGGGGCAGCCGCTGATGGTCCAGGTGAGCGGCGGGCAGCTCATCACCTCCTCCGGGCAGCCAATCATGGTGCAGGCGGTGCCTGGCAGCCAGGGGCAGACCCTAATGCAGGTGCCGGTGTCCGGAGCGCAGGGGCTGCAGCAGATCCAGCTGGTCCAGCCCGGGCAGATCCAGATCCAGGGAGGGCAGGCGGTGCAGGTGCAGGGGGCGCAGGGCCAGACCCAGCAGATTATCATCCAGCAGCCGCAGACCGCCGTCACGGCCGGGCAGACTCAGGGGCAGCAGCAGATCACTGTTCAGGGACAGCAGGTGGCTCAGACTGCTGAGGGACAGACCATCGTGTACCAGCCGGTGAACGCCGACGGCACCATCCTGCAGCAAGGCATGATCACCATCCCGGCTGCCAGCCTGGCGGGTGCTCAGATCGTCCAGACCGGCGCCAACACCAGCACCACCAACAGCGGCCAGGGCACCGTGACCGTCACCCTGCCCGTGTCCGGCAACATGGTGAATGCTGGCGGCATGGTCATGATGGTGCCCGGTGGCGGCTCGGTGCCCACCATGCAGCGCATCCCCCTGCCCGGCGCCGagatgctggaggaggagcCGCTGTACGTCAACGCCAAGCAGTACCACCGCATCCTGAAGAGGCGCCAAGCACGCGCCAAGCTGGAGGCTGAGGGCAAGATCCCCAAGGAGCGGAGGCAGAAATACCTCCACGAGTCCCGGCACCGCCACGCCATGCAGCGGAAGAGGGGAGATGGCGGCCGGTTCTTCTCCCccaaggagaaggaggagatgGCCCTGCAGgcccagcagcagcagcagcagcaggcccaGGCCGGAGAGGAGGCTCAGATCATCCGCGTGTCTTAGAGCTGGACTCTGattgtgagtctgtgtgtgtgtgttggggggccCACCCCTTCCTGCCCGACTGACTTCCACCCCCTGTTAAAGGACTTCCGCCCCACATCACTACCGCCCTGCTGTTGACCTTTGACCCCCCCAACAAAAACGCCCATCACGGCAGCAGAAGGCATCTAAGGCCTCTTCGGCCCCACAGGTGGAGAAGCGCACAAcaccagccccccccccccatacagTGCTGTACCAGGACACGCCCCTGCAGGGTGGGCTGCTTTTTTAGCACAAGTTCTCATTAATTTAAGCGATCGGAGCTCTCATGTGGGATATGAAATGATGTGAAGCTCTTGAAGTCTCCAGTGTTAAATTCCATGCtcatcagttttaaaatatcgATTCACAGAATATTCAGTCCAGTTGGGCGAGGGGAGGAGACAGGGGGGCtgctgggggtgggggacaCAGAGACCTTCAGTGACCTTTGGGGGTCATCGGGTGTGCGAGTGTgggtggggggagagggaggcgcAGGGACTGGTGTGGAGCCGGTGTGATGTGGATGGTCCGTCCCGGGCAGGGTCTGTTTGGCAACTTCAGACATCCAGAAAGAGAAACTAAATTCCTTCTCCAGGCCCACGTCGTACGTTTTATTTCCCtcttcattattgttttaagttGCGGCCCCTCGTGTGCCCCTGGGCACCTGTCTCCGCCTCGCTGAGCTCGGCGCCAGTCTCGGACCCCTTGACCTCCAGTAGTGTGGACCACTCCGAGACTGGCGCTGACCTGGGTCTCAGACATCAGTCCTTGCCTccttcatttgtattattttaacccCATCAATCTTCTATTCAACACGGGGCTGACAGTCCACCCCTGCCCGGCCCCTGCTCTCCCTCCGCTCACCGAGCTCTTGCCCCACACTTTACcagcatttattttgtccttGTTGTTTGATGTTTTATGAGGGGGTTATGGAAAATTagacatgtattttattattttactctaGAATGCCCATAGGTTTActtgtttgatttgtatttattatgctgtaagGCGATGCCCTATTAAAACATAgcgtttgtttaatttgttttgccaaAGTAGCGTTGATCTGTTAGTCTTGTTTCTGGGCGATGCTGTCCGGTGCCGGTGCGGTGATGTTGCTGGGTTAGCAGGAGGAACTCTTGAGACGCTGTTCTAGAAGCTCTTGGAGGTTCTGGTTCTTTCTCTGCCGTCCCGCAGCGTTGCTGACCATCTCTGGGTCTTTGTGTGACTGAGCCGGTACCTGTGACCGGAGTCTGGCCAATGGCTTTGCTGAAAATGGGTAGCAGCTGTAGATGTAGTGCATCTTTGTACCATgtaatttgtttacttttagtatatttttttgtattatgtatataaatgtataattctggGAATGGGAGATGTTGCGTTTGCCTTGGTAGCAtaagtgttttagtttttgttttcaaaacgcAACACTGAACAACTGAgtgggttggggtgggggtttTCTTTGAGGGAGGTggggaaatggaaaaacagcaacacGAGATCCGTGCTGTTCCTGCCCAGTGCgagtgaggggggggggtggggttgctTCAAAAGCAagagaacattttctgtttgctgGAAATGTTCCCCCAGTGCTTCCCACCCGCCTGCACAACACCTGCTGAGAGCTCCGATCAGACGCAGACACAGCAGACGGGTTAGTGAGGTCCTCCCTGGCGCCTGGGTGCAGCCAGTCCAGGGCGGCAGTCTGCGGGGGTCTCTCGTACTCCGGGGGGCCGCGGTGGTCCTGAGACTGAGCTCACAAAGCGCTGGCAGTTTaaatctttgttgttgtttttgcctgATGGACAAAGTGTGTGTAGGTTTTATTCCCCCAGCACCATGCAgaagtgtatttttgtgtttttttttgtttttgcaaagtCAAGCAATAAAACGGAGAGATTGTGCTTTGATCTGCTGTTCTCACACCATGACCTGGGATACTGCGATGCACTGGAGCTGGAACAGTGTCAGTCTGCCCCCGGTCCGAATCAGAATGGatctttttgtttggttttgattgTTCGTACTTTTTAAAGTCTGTGTGGGACAGACGGATgtttataatcatcatcacagAGCAAACAACCGTAGGTAATCGGTGTTTGTCACACATTACTGGTAGTCTTGTCTTTGAATTCAACCTGAAGGGCTTTTGCATGTAGAGATATTTGTACTTGAACAAATAAGTCATGTATAGagaattgtatgtgtgtgtgtgtcggggggaaAAGGGAGGGTTTGTACataatcattttttatatatattgtattgtttttcaagcATGAACAGTCTTGGAATAACTAAGCTGTTTAGGAAAAGTACTGTGTACACCATTCAGCTATAAAATCAATCgtacttttattttacaaacatgtttattattctgtaacaataaaatcaataatgagA

Function

symbol description
nfya Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of CCAAT-binding activity factor complex. Orthologous to human NFYA (nuclear transcription factor Y subunit alpha).

NR:

description
nuclear transcription factor Y subunit alpha isoform X9

GO: NA

KEGG:

id description
K08064 NFYA, HAP2; nuclear transcription factor Y, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013981 True 3661 mRNA 0.54 10 48776500 48785225

Neighbor

gene id symbol gene type direction distance location
AMCG00013980 LOC100690806,LOC102789655 coding downstream 362 48757586 ~ 48776138 (-)
AMCG00013979 LOC106565664 coding downstream 21673 48745893 ~ 48754827 (-)
AMCG00013976 NA coding downstream 113047 48651289 ~ 48663453 (-)
AMCG00013974 rbm15,LOC102786942 coding downstream 188179 48585631 ~ 48588321 (-)
AMCG00013973 NA coding downstream 252411 48522550 ~ 48524089 (-)
AMCG00013987 NA coding upstream 7149 48792374 ~ 48792875 (-)
AMCG00013986 NA coding upstream 9994 48795219 ~ 48807587 (-)
AMCG00013990 NA coding upstream 66063 48851288 ~ 48852970 (-)
AMCG00013994 gnat2,LOC107591823,LOC102304204,LOC100703259,LOC102200492,LOC101158106,LOC103367853 coding upstream 133172 48918397 ~ 48925913 (-)
AMCG00014000 NA coding upstream 507902 49293127 ~ 49298717 (-)
G48175 NA non-coding downstream 125271 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 230225 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 270364 48505871 ~ 48506136 (-)
G48082 NA non-coding downstream 277789 48461526 ~ 48498711 (-)
G48275 NA non-coding upstream 242059 49027284 ~ 49050432 (-)
G48363 NA non-coding upstream 568467 49353692 ~ 49354535 (-)
G48370 NA non-coding upstream 667808 49453033 ~ 49453872 (-)
G48398 NA non-coding upstream 752503 49537728 ~ 49595073 (-)
G48430 NA non-coding upstream 828471 49613696 ~ 49613974 (-)
AMCG00013967 NA other downstream 296923 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 401404 48366043 ~ 48375096 (-)
G47896 NA other downstream 801585 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 907637 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1575603 47188595 ~ 47200897 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 32758 48817983 ~ 48821156 (-)
G48373 NA other upstream 699275 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 709502 49494727 ~ 49498630 (-)
G48506 NA other upstream 934540 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 936521 49721746 ~ 49724237 (-)

Expression


Co-expression Network