AMCG00013986


Basic Information

Item Value
gene id AMCG00013986
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48795219 ~ 48807587 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013986
GCGGCATTTGCGGGTGTGGGCGGGGCTGAGGCAGCGCCCGTCCGTGCGGGAGCTCCCGGGCTGCCAGTCGGTCAGGTGGTGCGCTGGAGCTGCGGCGAGGAGCGCCTTCCGAGCCGGAGACAGAGCCGGAGACAGAGCCGGAGAGGCACCTCTATGGACGTTTAAGCCTCGAcagctgcgtgtgtgtgtccccCTCGCTGGAGCCATGCCCGCCCTGTCGCGCTGCctggcgctgctgctgctgctgtgctccCTGGCGCTTTGTGTGGATTTCCAGGACCGGACCCGCAGGAGCCGCGCCGACACCTTCGTGAAGACCCCCGGGGCGCAGGAGCCGCACAAGCGGGGCAGGAGGAGCGCCGACCCCCCGGACACCTGCGAGGCGCTGCGCGGGTACGACGCCCGGCTGGCGAACAACACGCACCCGTACGTCTTCAATGACCTGAGTGGCTCCGTGTCTCTGGCCTGGGTGGGCGATGGCACCGGGgtGGTGCTGGCGTTGACCACCTACCAGGTGCCGTTCTTCCTGGTGCGATTCGGCCAGTCCAAGCTGTACCGGAGtgaaaacTACGGGAAGTCGTTTCAGGACGTGACGACTTTGATCAACAACACCTTCATCCGCACCGAGTTTGGCATCGCCATCGGCCCAGAGAACTCTGGGAAGGTCATCCTCACTGGTGACGTGTCGGGCAGCAAGGGCTCCCGGATCATCCGCTCGGTGGACTTCGGGAACACATTTACCCGCACGGACCTGCCCTTCCAGCCGCTCATGCAGATCAGCTACAACCCCCGCAACGCCAGCGTGCTGCTGGTCCTCAGCATGAAGAACGAGCTGTGGATCTCTGAAAACTTTGGTGAGAGCTGGAAAAACATCCACGACATGGTCTGCCTGGTGAAATGGGGCGCTGACAGCACCATCCTGTTCACCACCAGCCCCAACGGCTCCTGCATTGACAGGGGGATGCTGGAGCTAAAGAAGACGTCAGATTTTGGCAGGACCTTCCAGGCCATTGGCAGTAGGATCTACTCGTTCGGGCTGGGCGGGCGATTCGTGTTCGCCTCTGTCATGACTGGACAGGGCACACAGAGGGTGATCCACGTGTCGGGGGACGGGGGCGAGTCCTGGGACATGGCGCAGCTGCCCCCTGTCGGGCACGAGCAGTTCTACTCCATCCTCGCCGCCAACGACGACATGGTGTTTATGCACGTGGACGAGCCAGGCGaCTCAGGCTTCGGCACGATCTTTGTGTCGGATGACCGTGGGACGGTTTACTCCAAATCCCTGGAGCGCCACCTCTACACCACCACCGGGGGCGACACTGACTTCACCAACGTCACCTCGCTGCGCGGTGTCTACATGACCAGCGTCCTGGCCCTGGATGGCTCGGTGCAGACGGTCATCTCGTTCGACCAGGGCGGGGAATGGCAGCCCATCCGGAAGCCGCAGAACAGCCAGTGCGACTCCACCGCCAAAGACAAGGACATGTGCAGCCTGCATATCCACGCCTCCTACAGCATCTCGCAGAAGCTGAACGTGCCCATGCTGCCGCTGTCGGAGCCCAACGCCGTGGGGCTGATCATCGCACACGgCAGCGTGGGCGACGCGATCTCCGTGTTGACGCCGGACGTGTACGTGTCGGACGACGGCGGGTACACCTGGGCCCGGGCCCTGCGTGGGCCGCACCACTATGCCATCCTGGACTCGGGGGGGCTGCTGGTGGCTGTGGAGCACTCGCCCTCGCTGCCCATCAGCCACATCAAATTCTCCACGGACGAGGGGCAGTGCTGGCACAACTACACCTTCACCAGCTCACCCCTCTTCTTCACCGGCCTGGCCTCCGAGCCCGGCGCACACTCCATGAACGTCAGCATCTGGGGTTACCGGGAGTCGCTGCTCGGCCAGTACTGGGTCTCCATCACCATCGACTTCAACGATCTGCTGACGCGGGACTGCGATGAGAAAGACTACGTGCCCTGGCTGGCCCACTCCAACGACCTCAGCGACCCCGAGGACGGCTGCATGCTGGGATTCAAGGAGAACTTCCTGCGGCTGCGCAAGGACTCAGTGTGCTGGAACGGCCGGGACTATGTCGTCAACAAGCAGCCCACGCCCTGCCCCTGCACCCTGGATGACTTCCTGTGATACCGGAAGATCCCGGGAGACAAGTGTGAGGGTGGGATGGTGCTGGAACGCCGGGAGATTGATCTGAGCAACTACTGCGTCAGCAACCTGCTGGGCTCAGAGACGCTGacNNNNNNNNNNTCCTCCAGCGCCGCCCCGGTGGTGGTGGCTGTGATCGCGGTGCTGCTGGCCTGTGTGGTGGGGGCCGTGCTGTTCGTCAAGAAATACGTCTGCGGGGGCAGGTTCCTGGTCCACAGGTACTCGGTGCTGCAGCAGCACGCGCAGGCCAACGGCATCGAGGGGGTGGATGAGCTGGACGCCAACGCGGCCGAGACGGGCAAGACAGAGTACCACGACGACTCCGACGAGGCACGGCCCCTGCGCACACAAAACACTGGACACTCGCACAGCACCACACACATCACGCACACTGCTGACACAACACTAGACAAACTGCTGAAGCAATACCGGTTACACACGTGTGCATCGAGTGAGCGCTGTTTTCTGTGTCTGCAGGACCTGCTGGAGTACTGA

Function

GO: NA

KEGG:

id description
K12388 SORT1; sortilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013986 True 2656 mRNA 0.63 18 48795219 48807587

Neighbor

gene id symbol gene type direction distance location
AMCG00013987 NA coding downstream 2344 48792374 ~ 48792875 (-)
AMCG00013981 nfya coding downstream 9994 48776500 ~ 48785225 (-)
AMCG00013980 LOC100690806,LOC102789655 coding downstream 19081 48757586 ~ 48776138 (-)
AMCG00013979 LOC106565664 coding downstream 40392 48745893 ~ 48754827 (-)
AMCG00013976 NA coding downstream 131766 48651289 ~ 48663453 (-)
AMCG00013990 NA coding upstream 43701 48851288 ~ 48852970 (-)
AMCG00013994 gnat2,LOC107591823,LOC102304204,LOC100703259,LOC102200492,LOC101158106,LOC103367853 coding upstream 110810 48918397 ~ 48925913 (-)
AMCG00014000 NA coding upstream 485540 49293127 ~ 49298717 (-)
AMCG00014003 NA coding upstream 495035 49302622 ~ 49310125 (-)
AMCG00013998 NA coding upstream 504723 49312310 ~ 49317429 (-)
G48175 NA non-coding downstream 143990 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 248944 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 289083 48505871 ~ 48506136 (-)
G48082 NA non-coding downstream 296508 48461526 ~ 48498711 (-)
G48275 NA non-coding upstream 219697 49027284 ~ 49050432 (-)
G48363 NA non-coding upstream 546105 49353692 ~ 49354535 (-)
G48370 NA non-coding upstream 645446 49453033 ~ 49453872 (-)
G48398 NA non-coding upstream 730141 49537728 ~ 49595073 (-)
G48430 NA non-coding upstream 806109 49613696 ~ 49613974 (-)
AMCG00013967 NA other downstream 315642 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 420123 48366043 ~ 48375096 (-)
G47896 NA other downstream 820304 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 926356 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1594322 47188595 ~ 47200897 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 10396 48817983 ~ 48821156 (-)
G48373 NA other upstream 676913 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 687140 49494727 ~ 49498630 (-)
G48506 NA other upstream 912178 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 914159 49721746 ~ 49724237 (-)

Expression


Co-expression Network