AMCG00014001 (itpr3,LOC106572092,LOC107731245)


Basic Information

Item Value
gene id AMCG00014001
gene name itpr3,LOC106572092,LOC107731245
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49354962 ~ 49385651 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014001
ATGTCGGAAATGTCAAGTTTTCTCCACATAGGGGATATCGTCTCCCTGTACGCCGAGGGCTCTGTCAACGGGTTCATCAGCACTCTGGGGTTGGTGGACGACCGCTGTGTGGTGGAGCCCGCGGCTGGAGACCTGGACACGCCGCCCAAGAAGTTCCGCGACTGCCTGTTCAAGGTGTACCCCATGAACCGCTACTCTGCGCAGAAGCAGTTCTGGAAAGCCAAGCAGGCCAAGCACGAGAAAGACAAGATCGGGGACGTGGTGCTGCTGCAGAAGCTTCAGCATGCGGCCAACCTGGAGCAGAAGCAGAACGAGGCCGAGAACCGGAAGGTGCTGGGAGAGGTGGTCAAGTACGGCAGCGTGATCCAGCTCCTGCACATGAAGAGCAACAAGTACCTGACCGTGAACAAGCGGCTGCCCGCGCTGCTGGAGAAGAACGCCATGCGGGTGACGCTGGATGGGACGGGCAACGAGGGCTCCTGGCTCTTCATACAGCCCTTCTGGAAGCTGCGTGCCAACGGAGACAACGTGGTGGTGGGAGACAAGGTCATCCTCAACCCGGTGAACGCCGGCCAGCCACTCCACGCCAGCAACTACGAGCTGACGGACCACCCCGGCTGCAAGGAGgtgGTCCATCACGACCCATGCAGGGGCGGCGCTGGCCACTGGAACAGCCTGTACAGGTTCAAACACCTGGCCACTGGGAACTACCTGGCCGCTGAGGAGAACCCAGGGTACAAGGGCGACAATGGAGAGAGCAGAAGTGTGTCTGACGGCAGCCGCAGTAAGAGGAACATGGGGGAGAAGGTGAAGTACAAGCTGGTGGCCGTGCCTCACGGGAACGACATCGCCTCACTGTTCGAGCTGGACCCCACCACCCTGCAGAAGACCGACTCCTTCGTGCCCAGgAATTCCTATGTCAGACTGAGACACCTGTGCACCAACACCTGGATCCAGAGCACCAACGTCCCCATCGATGTGGATGAGGAGAGGCCCATCAGACTCATGCTGGGAACCTGTCCCACAAAGGAGGACAAGGAGGCGTTCGCCATCGTCTCGGTGCCTGTGTCCGAGATCCGAGACCTGGACTTCGCCAACGACGCCAGTCTCATGCTGGCCACTGTGGTGGACAAGCTGAACGAGGGTTTCATCAGCCAGAACGACCGCAGGTTTGCCATCAAGCTGCTGGAGGACCTGGTGTTCTTTGTGGTGGACACACCTAACAACGGCCAGACCGTGCTGGACGTAGTGATGACCAAAGCCAACCGTGAGCGTCAGAAGCTCATGAGGGAACAGAACATCCTGAAACAGGTTTTTGGGATCCTGAAGGCCCCCTTCAAGGAGAAGCCCGGTGAGGGGCCTCTGCTGCGGCTGGAGGAGCTGTCGGACCAGAAGAACGCTCCGTACCAGTACATGTTCCGGCTCAGCTACCGCGTCCTGCGCCACTCTCAGGAGGAATACCGCAAGAACCAGGAGCACATCGCCAAGCAGTTCGGCGTGATGCAGTCGCAGATCGGATACGACATCCTGGCCGAGGACACCATCACCGCGCTGCTACACAACAACCGCAAGCTGCTGGAGAAGCACATCACCAAGACGGAGGTGGAGACCTTCGTGAGCCTGGTGCGCCGGAACCGCGAGCCCAGGCGCCGGGTGCCCAAGGAGATGCCTCACGCCCCAGAGTTCAGCTCCTCTTTGGAGGACTACGGGGACGAGGACGAGGTGTGGCTGGTCTGGACTGACAAGAACAACGAGAAGCAGGAGAAGAGCATTCGGCAGCTCGCCCAGGAGGCCAGGCAGGGCAACGCCCATGACGAGAATGTGCTCACCTACTACAGGTACCAGCTAAAGTTGTTTGCGCGGATGTGCCTGGACCGGCAATACCTGGCCATCGACGAGATCTCGAAGCAGCTGGACGTGGAGCTGATCTTCCTGTGCATGATGGACGAGATGCTGCCCTACGACCTGCGTGCCTCCTTCTGCCGCCTCATGCTGCACACACATGTGGACCGCGACCCGCAGGAACTTGTTACACCCGTCAAGTTCGCCCGCCTGTGGACCGAGATCCCACCTGCCATCACCATCAAAGACTACGACTCCAACATGGACGACTCCCGCGATAACAAGAAGAACAAGTTTGCCAACACCATGGCCTTCATGGAGGAGTACCTGAACAACGTGCTGCACGACGACCTGCCCTTCGCCCACGATGAGAAGAACAAGCTCACCTACGAGgtGGTAAGTCTGGCTCGCCACCTCATCTACTTTGGCTTCTACAGTTTCTTCGAGCTGCTGAGGTTGACCCGCACCCTGCTGGGCATCATTGATTGTGTGCCCAACCCCATGCTGATGCAAAACATGTTCCCTGATGATGTGGGCGGCAAGAACATGAAGCGATCCATTCACGGGATGGGTCACATGATGTCCACTATGGTGCTGAGCCGCAAGCAGTCCATCTTCGGCACGGGGGGGCGCTCCAGCGTCAGCGGGGACCCCCAGGCCCGCACCAAGGACCGCATCGACAAGCAGGACATCACTGTCATGGACACCAAGCTGAAGATCCTGGAGATTATGCAGTTCATCCTCAATGTGCGTCTGGACTATCGCATCTCCTTCCTGCTTTCTGTCTTCAAGAAGGAATTTATGGAGGTGTACCCTATGGGAGATGCAGACGCCACTGCCTCCATCGAGCACGCAGCCACCATAAACCTGCAGCGCATCGGGGAGCAGGCAGAGGCCATGTTCGGAGTGGGGAAGGGTAACAGTATTCTGGAGGTGGACGATGAGGGCGGACGCATGTTCCTGCGTGTGCTGATCCACCTCACCATGCATGACTACCCCCCCCTCATATCTGGGGCACTGCAGCTGCTCTTCAAACACTTCAGCCAGCGGCAGGAAGTCCTGCACACTTTCAAACAGGTGCAGCTGCTGATCTCAGAGCAGGACGTTGATAACTACAAGCTGATCAAGAGCAACCTCGACCGGCTGCGCACCATGGTGGAGAAATCGGAGCTGTGGGTGGAGAAGAAGAGCAGCTCGTCTGGTGGGGAGGGCAAGCAGGACAAGAAAGACAAGAAGGacaagaaggagaaaaaggagGTGGAGAAGGAGGTGGCCCCTGAAGAGCCCACACCAAAGGAGGAGAAATCAGAGAAGAGCAACGAGAACTACCAGATCGTCAAAGAGATCCTGGAGCGGCTCAACAAGATGTGCAGCACAGGGGTGTGGAAGAAGCAGCAGCGCCTCCTGAAGAACATGGGTGCCCACAACGTGATGCTGGACCTGCTGCAGGTGTCCTACGACAAGAATGACAAGAAGATGCAGGAGATCATTAAGTACACCCACCAGTTCCTTCAGAAGTTCTGCATGGGCAACACAGAGAACCAGACTCTTCTGCACAAGCACCTCAGCCTGTTCCTCAACCCTGGGCTCCTGGAGGCAGAGACGGTGCAGCACATTTTCTCCAACAACTACCAGCTGTGCACAGAGATCAGCGAGACGGTGCTGCAGCACTTCATCCACTGCCTGGCCACGCACGGCCGGCACGTGCAGTACCTCAACTTCCTGCACACCATCATCAAGGCCGAGGGCAAATACGTCAAGAAGTGCCAGGACATGATCATGACcgagCTGACCAACGCTGGTGAGGACGTGGTGGTCTTCTACAACGACAAGTCCTCCTTCAACACCATGCTGGAGCTGATGGCGCAGTCCAGGGAGGGAGTGCAGGAGCACAGCCCCCTGCGCTACCACATCTCCCTGGTGGAACTGCTGGCCGCCTGCGCCGAGGGCAAGAACGTCTACACCGAGATCAAGTGCACCTCGCTGCTGCCCCTGGAGGACGTGGTGCGTGTCGTCACCCATGAGGACTGCATCACCGAGGTCAAGATCGCCTATGTAAACTTCGTGAACCACTGCTACGTGGACACTGAAGTGGAGATGAAGGAGATCTACACCAGCAACCACATCTGGAAGCTGTTTGAGAACTTCACTGTGGACATGGCCAGGGTGTGTAACAGGCGAGAGAAGCGTTTGTCCGACCCGACTCTGGAGCGTTACGTGATCTCCGTGcagcagcaccgcAGCCTGGTGGAGACCTGCATCCGCACCCTCGCCGTGACCGCGAAGGGGCGCTCCATCTCGGTGCCGATGGACCTGGACTCTCAGCTCAGCACCATGCTGAGCACCAGCGCTCTGGGCTCCCTGCTGATCCAGCACACCAAGACCCTGATGACCTCAGAGGAGAAGCTGTGCATCAAGGTCCTGCGTACCCTACAGGAGATGCTCATCAGGAAGTACGATTTTGATGAAAAGAACTCCTTCTACAAGCTGATGATGGGAGACAACAAGTCAGAGAAGTTCTTCAAGGTTCTGCATGACCGCATGCGCGGCGCCCAGCAGGACATCAAGGCCACCGTGTCGGTCAACGTGGGTGAGATGAGCAACCGGGCCCAGGACAGCAAGGAGCTGGACCAGGGTGTGTCTCCCCAGTTTGCGGTGCCCTTGCCTGGCCAGCCCCCTCCCGGGCAACCCCCCCACGAGCAGCTAGAGCCCGAGGCTGAGATGGGTCCGGCCGTCATGATCATGAAGCCCATAATGCGCTTCCTGCAGTTGCTGTGTGAGAACCACAACCAGGACCTGCAGAACTTCCTGCGCTGCCAGAACAACAAGACCAACTACAACCTGGTGTGCGAGACACTGCAGTTCCTGGACATCATGTGCGGCAGCACCACGGGGGGGCTGGGGCTGCTGGGGTTGTACATCAACGAGGGCAACGTGGGGCTGATCACCCAGACCCTGGAGACGCTGACCGAGTACTGCCAGGGCCCCTGccaggagaaccagaCCTGCATCGTGACCCACGAATCCAATGGCATCGACATCATCACAGCGCTGATCCTCAACGACATCAGCCCCCTGTGCCGCTACCGCATGGAGATGGTGCTGCAGCTGAAGGACAATGCCTCCAAGCTGCTGCTGGCGTTGATGGAGAGCCGCCACGACAACGAGAACGCTGAGAGGATCTTGTTCAACCTGAGGCCCCAGGAGCTGATAGAGGTGATAAAGAAGGCGTACCACCAGGAGAAGGACTGTGAGGGGGGGGAGGTGTCTCCCCGTGAGGTCGGACACAACATCTACATCCTGGCACTGCAGATGCTGAAGTCTTCGGTTCCGGCGGAGACAGAGGCAGAGGACCCACTCGAGTACTACGAGAAACACACGGCCCAGATCGAGaTCGTGCGAGAGGACCGCAGCATGGAGCAGATCGTGTTCCCGGTGCACAGCATCTGCGAGTTCCTGACGGAGGAGTCGAAGCATCGCGTGTTCACCACCACGGAGCAGGATGAGCAGGGCAGCAAGGTCAGCGACTTCTTCGAGCAGTCCACCTTCCTGCACAACGAGATGGAGTGGCAGAAGAAGCTGCGCAGTATGCCGCTGCTGTACTGGTTCTCACGGCGGATGACTCTGTGGGGCAGCATCTCCTTCAACCTGGCCGTGTTCATCAACCTCATCATCGCCGTCTTCTACCCACACCACTCCGgcGCAGTGGAGTCCCCGGTGCTGCCCATTCTGTTCTGGGCGATGTTGGCACTGGCACTGGTGGGCATGTTCTCCCAGAGGAACGGGCTGCGGCCACTCTCCGTCGCGCTCATCCTGCGCTCCATCTACCACTTCGGCATCGGGCCCACGCTGCTTACTCTGGGCACGCTCAACCTGATCAATAAGATTGTGTTCCTGGTGAGCTTCGTGGGGAACCGCGGGACGTTTATCCGAGGCTACCGCGCCATGGTGATGGACGTGGAGTTCATGTACCACGTGGTGTACGTGCTGACCAGCACCCTGGGGCTGTGTGTCCACGAGCTCTTCTACAGCATCCTGCTGTTCGACCTGATCTACCGGGAGGAGACCCTGTTCAACGTGATCAAGAGCGTGACGCGCAACGGCCGCTCCATCCTGCTGACCGCGCTGCTCGCCCTCATCCTCGTCTACCTCTTCTCCATCGTGGGCTTCCTCTGCCTCAAGGACGACTTCATCATGGAGGTGGACCACCTGCCCCAGCCCAAGGAGCTGGAGCTGGGCGCTCACGGAGAGGCTGCACAGGACTTCCTGAATTCCTGCAGTGGAGACCAAGTGAGCTGCACTGCGGGGGCCAGCCTGCTCGCCGTGCCTGAGGAGGAGGACGATGGGACGGAGCGCGCCTGCGACACGCTGCTCATGTGCATCGTCACCGTGCTGAACCACGGGCTGCGGAACGGGGGGGGCGTGGGAGACGTGCTGCGCAAACCCTCCAAGGACgagTCCCTGTTCCCGGCGCGTGTGGTGTACGACCTGCTGTTCTACTTCATTGTGATCATCATTGTGCTCAACCTCATCTTCGGTGTGATCATTGACACCTTCGCAGATCTGCGTAGCGAGAAGCAGAAGAAAGAGGAGATCCTCAAGACCACCTGCTTCATCtgtgGGTTGGAGCGCGACAAGTTCGATAACAAGACAGTGTCCTTCGAGGAGCACATCAAGATGGAGCACAACATCTGGAACTACCTGTACTTCATCGTGCTGGCGATGTCTCTGGTGGTAACCGAGGGCGACGGCGAGCAGAACGAGATGAGGAACCTGCAGGACCGACTCAACTCCACCATGAAGCTGGTCACTCACCTCACCACACAGCTGACCGAGCTCAAAGAGCAGATGACAGAGCAGCggaagaggaggcagaggaTGGGCTTTGTGGACGTGCAGAGCAGTGCTGGCACTGTGCCCCCGGGCGCGGGGGTGGGCGGCAACCACCAGATCGTCAAGACGTAG

Function

symbol description
itpr3 Predicted to enable several functions, including calcium ion binding activity; inositol 1,4,5 trisphosphate binding activity; and inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity. Acts upstream of or within embryonic skeletal system development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; plasma membrane; and secretory granule membrane. Is expressed in brain; head; and pericardial region. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human ITPR3 (inositol 1,4,5-trisphosphate receptor type 3).

NR:

description
PREDICTED: inositol 1,4,5-trisphosphate receptor type 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014001 True 6807 mRNA 0.59 51 49354962 49385651

Neighbor

gene id symbol gene type direction distance location
AMCG00013997 NA coding downstream 2264 49347284 ~ 49352698 (-)
AMCG00014002 NA coding downstream 24101 49327442 ~ 49330861 (-)
AMCG00013999 NA coding downstream 28820 49320171 ~ 49326142 (-)
AMCG00013998 NA coding downstream 37533 49312310 ~ 49317429 (-)
AMCG00014003 NA coding downstream 44837 49302622 ~ 49310125 (-)
AMCG00014007 arl8a,LOC107671521,LOC107569762,LOC105900530,LOC107750681,LOC107722853 coding upstream 70976 49456627 ~ 49463170 (-)
AMCG00014008 NA coding upstream 78788 49464439 ~ 49470132 (-)
AMCG00014006 NA coding upstream 96391 49482042 ~ 49486442 (-)
AMCG00014011 NA coding upstream 119815 49505466 ~ 49522620 (-)
AMCG00014012 NA coding upstream 172153 49557804 ~ 49558760 (-)
G48363 NA non-coding downstream 427 49353692 ~ 49354535 (-)
G48275 NA non-coding downstream 304530 49027284 ~ 49050432 (-)
G48175 NA non-coding downstream 703733 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 808687 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 848826 48505871 ~ 48506136 (-)
G48370 NA non-coding upstream 67382 49453033 ~ 49453872 (-)
G48398 NA non-coding upstream 152077 49537728 ~ 49595073 (-)
G48430 NA non-coding upstream 228045 49613696 ~ 49613974 (-)
G48433 NA non-coding upstream 232626 49618277 ~ 49618955 (-)
G48437 NA non-coding upstream 236446 49622097 ~ 49623191 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 533806 48817983 ~ 48821156 (-)
AMCG00013967 NA other downstream 875385 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 979866 48366043 ~ 48375096 (-)
G47896 NA other downstream 1380047 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 1486099 47864850 ~ 47868863 (-)
G48373 NA other upstream 98849 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 109076 49494727 ~ 49498630 (-)
G48506 NA other upstream 334114 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 336095 49721746 ~ 49724237 (-)
G48510 NA other upstream 342853 49728504 ~ 49729055 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_02094715_02126321 ITPR3 coding CI01000010 null 2093743 ~ 2126321 (-)