G45971


Basic Information

Item Value
gene id G45971
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38457256 ~ 38458799 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU57290
CCAAGTCAGACTGCAGCTGCttctttgtttattcattttttggaaAAAGGATTCAGAGATGAAGATGCaactgtaaatacataaaaaccaTACAGAAGATAGAAGCTTCAACATACTGGcttgttaattatatataggTTCTATACAGGCAGGGGTTCATATGCTGGTGATGCACCCCCTAGTGGCACACTGAGAGATTGCAGCTCTGTCTCTGTAAAAGGGTCCGGGGGAAAGCAGACGTTACTGTCTTTGAAGTAAATTTggtctcttaaaaaaaaaagatatatccTAATTACATCTGATATACATCAGGGCAGCCTCCAGCCCTGATCCTGAAGAGTGACAGTACAGGGGAAAGCAGTATACTGGTATGACGTTGGGGGGTGGTATGGGAATGTGATTCTTGTACAGACAGAACATAAGCAGGACAAGCAGAGCAGAACACtaataagaatataaatattaaattataataaatacaagattTTTTGCCTTTGCAGTTTAAGCTCTGAGACTTGCAAGAACAAACTGCCAACATCGTTTATTActcatttattgaaataattcaaacctgtttaaagagagaaaaaacaaacaagcaagacaaacatgatatatattaaaataaaaggcaaaggGATTGAAAAAATACTGGGAGAAAAAGCTGAATAAAACAAGAGAGGGATAGCATTCCCATGATAAAAACATCCTGGGTGTGTCTGCCAACTCAGGCCTGCTCTGCACAGCAAATCAGTcatcatactactactactactactactagtagtagtaataagtcataataataataaacaataataatacatgataataatagtagtagaagtagtaaaAGGAATGGCATATCAGAGCTCTCTCCATACACAGCAGTGGCTTAAGTCTCAATATTCatgagagagcaagagagggagagaaccCACAGATTGACCATCCCCTCCCAGTCTTTGTTCGATCTGTCCCCTCTTCCCTAGTCATCACCCCCTCCTGATCCCTTCTTGCCTCCCTCCCTTTcactatctctccctctctctctctctgtcctgctctctctctctctccctctctgcattTTCCTCTCCCTATcccactctcctcctctccctcagtgtgcagtgtgtatagtGTTTCTTTGGGGTTGGCTCACGGACCGTTATTGCTGGATCGCgcactgggagagagggagatgatggagggagggggtggggtgttGGTTTGCATTGGGAGTAGCTTGTTGCTTATGTTGGCTTGATTTGGGCCAAGGTGATGGCTTGGCGAGAGAAAAGGGTAAGCAAAGGGAGGGCGTGGTGGAGCAGAAAGGTGAGTAGGGTGTATGGATGCagggaggaaggaggaggaggaggagggaggccaGAGGGAAGGAGGTTAGCGCAGGTCACTCTCCTCGCCCTCTATGGTCTTCTTAATGCGCAGCAGCATGGTAGTCAGCCACTGGTCCAGCCTGGAGATTGTGTCATATTCcttcacctgagagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57290 True 1523 lncRNA 0.44 2 38457256 38458799

Neighbor

gene id symbol gene type direction distance location
AMCG00013651 NA coding downstream 23094 38417544 ~ 38434162 (-)
AMCG00013653 ehd2,LOC107670629,LOC107565090 coding downstream 41608 38407933 ~ 38415648 (-)
AMCG00013642 NA coding downstream 75464 38378800 ~ 38381792 (-)
AMCG00013643 hnrl1,LOC106603088 coding downstream 82767 38360157 ~ 38374489 (-)
AMCG00013645 NA coding downstream 120048 38330230 ~ 38337208 (-)
AMCG00013652 bckdha coding upstream 13537 38472336 ~ 38476163 (-)
AMCG00013658 NA coding upstream 37151 38495950 ~ 38502831 (-)
AMCG00013657 NA coding upstream 56237 38515036 ~ 38521022 (-)
AMCG00013660 sympk,LOC104962469,LOC107595511,LOC107712124 coding upstream 65956 38524755 ~ 38536222 (-)
AMCG00013659 NA coding upstream 110653 38569452 ~ 38574128 (-)
G45933 NA non-coding downstream 58258 38397935 ~ 38398998 (-)
G45930 NA non-coding downstream 99861 38355674 ~ 38357395 (-)
G45912 NA non-coding downstream 230069 38226185 ~ 38227187 (-)
G45813 NA non-coding downstream 358708 38097989 ~ 38098548 (-)
G45806 NA non-coding downstream 383778 38073088 ~ 38073478 (-)
G46003 NA non-coding upstream 43543 38502342 ~ 38551147 (-)
G46011 NA non-coding upstream 82477 38541276 ~ 38543342 (-)
G46114 NA non-coding upstream 308627 38767426 ~ 38768235 (-)
G46134 NA non-coding upstream 367705 38826504 ~ 38830732 (-)
G46144 NA non-coding upstream 486014 38944813 ~ 38945061 (-)
AMCG00013650 NA other downstream 5909 38445846 ~ 38451347 (-)
AMCG00013641 NA other downstream 42053 38353850 ~ 38415203 (-)
G45917 NA other downstream 207665 38244821 ~ 38249591 (-)
G45906 NA other downstream 225965 38193034 ~ 38231291 (-)
G45792 slc8a2,LOC103358178,LOC107739881 other downstream 413288 38043736 ~ 38043968 (-)
AMCG00013661 tmem91,LOC107676753,LOC107757682,LOC107662142,LOC107758240 other upstream 19753 38478552 ~ 38484269 (-)
AMCG00013663 b9d2 other upstream 85051 38543850 ~ 38546035 (-)
AMCG00013669 NA other upstream 130180 38588979 ~ 38591202 (-)
AMCG00013677 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308 other upstream 238596 38697395 ~ 38701074 (-)
AMCG00013685 NA other upstream 323225 38782024 ~ 38783433 (-)

Expression


Co-expression Network