G46003


Basic Information

Item Value
gene id G46003
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38502342 ~ 38551147 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU57343
ttttcttattaacattagtactaaatattttatttaaaaattttttttaacaaacataagaacaaatgcaaattacagcTGCCGCAGAGGTGATGACTACCCCCACTGCACCCTGCGACGCAAAGCCAGGAGACAGTGTGTCCGCAGTGTGTGCTGCCCGGCACAAGGCACTCAAAGTCCGCTGACTGACAATCAGTCGTCTTGATCGGGGGACAGTTGATGGTCTGGAGCCGGCGATGATCTCACTCCCTGTGGAACTCTGTGCCAGCGAGGAATGTCCCGAGATTCCAGAACTCCACAATCCTTTTGAAAGTTCTCAACGGGAAGATTCTTGATCTTTCCACTTGAGCTGCCCCCTTCCCGACCCGCAGCAGTCTTCCGTTTCAGGCAAGGCCCCGCCCGCATAATTACTAATTGGGTCGGTTCCTCAAGAATGCTGGCTACTGCAGTCTCAGCACAGGCTCCACCCCCCCCAAAATCAGCCACACTGTCCTTTAGTCTCACCCTGACTCCATCCCGGAAGTCCATTTGGGTCCAGATTGAAATGGTGGTTCTGGTGCTGGttgagaggaggagagggagcgaGCTGCGCACACAAACCACCAGAACAGACCTTCTCAGCCAGTCCAGTCGAGGACAGTCCAGAATGGTCTAGTCCAGCACAGTGTGGTGTAGTCCAGTGCATTGTGTTCTAACCCAGCCAAGTGCAGTCCAGTGTATTGTGCCCAGTCCAGTCCATCACAACCTAGTCCAGTCCACTGTATCCCAGTTGAGCCCAGTCCACTACAGTGTAGTCCAGCCCACTGTATCCCAGTCGAGCCCAGTCCACTACAGtgtagtccagtccagtgtatcCTAGCACAGCCTAATAAtatctagtccagtccagtgcataGCATGACAGCTCAGTCCACTACAGCaatagtccagtccagtccagtttagtccagtccagtccagtagcAGTGTGATTCTACAACCTCTATTATTCTGGACTTGCAGCTCctctccccccacctccccttctCAATcaccaaaataattaaaaggatcTAAATCCACTGGCATAGAGAACATAGagaaacactctctctctcagacacacaaacacacacacaaaaacacatgcatacactTACActcaaataacaaatactaGGGAGACAAGCtacaatggaaaacaataaataatttgtaaaaaggGCTGGAAATGACTCGATGGTACAGacagatctgtgtgtgtgtctctaattgtgtatctgtgtgtatgtgttactgtgtgtctTTGCTTCTGTCTGttgtctgtatctgtgtcttagtgtgtgtgtgtgtCTGTGTCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57343 True 1342 lncRNA 0.48 2 38502342 38551147

Neighbor

gene id symbol gene type direction distance location
AMCG00013652 bckdha coding downstream 26179 38472336 ~ 38476163 (-)
AMCG00013651 NA coding downstream 68180 38417544 ~ 38434162 (-)
AMCG00013653 ehd2,LOC107670629,LOC107565090 coding downstream 86694 38407933 ~ 38415648 (-)
AMCG00013642 NA coding downstream 120550 38378800 ~ 38381792 (-)
AMCG00013643 hnrl1,LOC106603088 coding downstream 127853 38360157 ~ 38374489 (-)
AMCG00013659 NA coding upstream 18305 38569452 ~ 38574128 (-)
AMCG00013662 NA coding upstream 29363 38580510 ~ 38585732 (-)
AMCG00013667 NA coding upstream 41140 38592287 ~ 38597883 (-)
AMCG00013670 NA coding upstream 56942 38608089 ~ 38619473 (-)
AMCG00013666 NA coding upstream 79047 38630194 ~ 38639923 (-)
G45971 NA non-coding downstream 43543 38457256 ~ 38458799 (-)
G45933 NA non-coding downstream 103344 38397935 ~ 38398998 (-)
G45930 NA non-coding downstream 144947 38355674 ~ 38357395 (-)
G45912 NA non-coding downstream 275155 38226185 ~ 38227187 (-)
G45813 NA non-coding downstream 403794 38097989 ~ 38098548 (-)
G46114 NA non-coding upstream 216279 38767426 ~ 38768235 (-)
G46134 NA non-coding upstream 275357 38826504 ~ 38830732 (-)
G46144 NA non-coding upstream 393666 38944813 ~ 38945061 (-)
G46175 NA non-coding upstream 623408 39174555 ~ 39177975 (-)
G46236 NA non-coding upstream 867344 39418491 ~ 39418739 (-)
AMCG00013661 tmem91,LOC107676753,LOC107757682,LOC107662142,LOC107758240 other downstream 18073 38478552 ~ 38484269 (-)
AMCG00013650 NA other downstream 50995 38445846 ~ 38451347 (-)
AMCG00013641 NA other downstream 87139 38353850 ~ 38415203 (-)
G45917 NA other downstream 252751 38244821 ~ 38249591 (-)
G45906 NA other downstream 271051 38193034 ~ 38231291 (-)
AMCG00013669 NA other upstream 37832 38588979 ~ 38591202 (-)
AMCG00013677 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308 other upstream 146248 38697395 ~ 38701074 (-)
AMCG00013685 NA other upstream 230877 38782024 ~ 38783433 (-)
AMCG00013691 NA other upstream 391628 38942775 ~ 38971579 (-)
G46333 NA other upstream 1722244 40273391 ~ 40275098 (-)

Expression


Co-expression Network