G46263


Basic Information

Item Value
gene id G46263
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39622363 ~ 39627190 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU57688
ttGTTTTAGGAATAAGACAATTGAAAACAGTGCTCACTTGAGAGAGGGTTTAGATTAACTACTTCACTACTACTACACAAACATCCAGCtgttaaataacacacagagaCTGTGCAAGAAACATTTCACATGATTTATTGAATTACAACAATTGGGGCACATAGTATTGAAATATAGTATTGAAATACACCATACAGAAACACTTCAAAGGGTATTTTGCCAGGTATTGTGAGACCCTGTGATTTTCACTGGGGAATTTTGAATGCTCCAGCAACGGGGTTTGCAGTCAGAAACCTCAAACAATCCCTTAAAGCCACTCCAGTGAAGCCAATTTTAAGAATAATTATCAACACAAACTGgcttattacaatatattataatctCATAATGAAGGGCAGTAAGAGTGTTTTCATCTTACACAGAGACcaagacaaaacatttaatgaacaaCAGATGGTCGATCAGTATTGGTCAGTGCTATTATCTACCCAAAATGACCAAAAGCAAAGTTATTTGCTTCTGATATAAAGCCTCTGTATAAAGAATAAGATTACTAAGAggctttttctcatttatttacatatgtatatatttatttacaagctCAATTGCACAAGCTtgaatgttgcaatggacattAGAAATCAGATATCTCATTATTGTATGTTCAGATCAACACAATTATGACCGAATGATTGCAATGGTTCCTTGTTATTGACAGTTGTGTTGTATGTAGCCAGTAAGTGGTATAACACAGTATGCTCCATAATAGTCAGTGGGACTGGCTTGAGTGAAAAAATTGAAGGTTGGGCTGACAAGCAAATTGTGAGCTCTTGGCAGTTCCCTCATGAATTGTGCAGGGTCTAGGATATTGTGTACAATCATAAGCAGTGTCAGCTCTAAAGTAAATAAGAGTCTTTCAAAGGGATGAGAAGACAGGCATGTAACAAGATATTGGCACTTTTCTTGAAAAATATAACGCATGTATAGAAGAAAACATACGGTCTTATAACGCTACCCTTGCTTCTCTGATTCAGAATGACTGTACACATTAAATCAAACCACTGACAATTAATATCATGGGACACAACCAGAAAAGCCAGATTACACTACCAGACTTTTACTGCTGAATTCCTAGAATAGATTATTGCAAGTGGAGTTTACAGAAAACTTTAAATCACTACAGTGTTGCACAATCCTGAATAAATGACAAATGCAACATCAGTGTTGCTGTATGGTGACTGGgaattatgaaatacattctCCTTAATGTCAAGGAGGCAGCTAAGTATTTAACAGCAGACTGATGCTTTGCAGTTACAATTCTTTCCAACATGAAAATTCATGCGTAAATAAAATGAGTAAATGCTCAGTCATTTCcttcaaatataatacatttggcAGGCTCTCTATACAACAGATGAGCCTTACAATctacaaataattcaataagACAGAGGCCAGAGTTAAAGTTAAGATATCTAGCACTATACTAAACTATTACATAAGACCCTTAATTGTGCGTTTTCCCAGCATTAAATATGGACAATAAATAGACATTTTCATTGCAATGACAAAATGGTTTGAACAATTACTTACAACATGCTGTAAGAGTGTGCCAGACCACAATCAAATatcacacattatttaaatcacaaacatatgcatgtttataaatatataaatatatactctAGGCTAGCTTCAGATGCCCTCTATGTGCTtattagcttaaaaaaaTCATCCAGTGGTTCGATTCCTACAAGTAACAATCACAAGCAAGAGCTCAGGTATGCATGGTATGAATGGCACAGTTCCCTTCTTGGTTCCAGTGTCTCCCTGATCCAGCAATTacagacaacaaacacaaagcaaacgATCAGctcaaatataatgtataattaccGACACAATGCTTTCTCAGTCTCTATTGAGGAGGGGAAACAACAGATATGCCAGCTTTTAGGTCTATTTCAGTCTTTATGCCTATTTCAGGAAGTATCTTAATCCCCCTTATTTTCAGAAGTTATGGAAAGCGCCTCAGATACAACGAACTACAGATCTCAACAGGCCGGTTTTAAGCCGAGGAAAGAGCTGGTAAAAGCATATCCTACAGCCCTCGGAGAATTAAGCTGTTGAAACCGGTTGCCAGTGGTCTGCCTATAGAAGGCAGGGAACAGAGTAGCTCACATTCTTAGCCTTTTATTCTGGTCAACTGGCAATTGAACAGCAAGTCCTGTCACACCCACAAAGCTAACTGTCCGTTACAAGCAGCAACTCAAAACGGTATGCTTTGTCTATGAGGATTGTGTTTGGGCGCTAGCATACTGCCACAAATAATAACTGATGGCAACAGTATTCATATTCCCATTTCAGATTTGGAAAAAgatggcttttaaaaaaaaagttactatAGGTGGCTTTAGTGggtttgtgtgtctctgcttGCCACACCCATGGCAATGGCCTTTGACGCACACACCAGACGCATAGGCCTTATTCTTTCCACCCCCCTTCGTCTCATTCAGCCTGTTCACTATGTCCATTGGTGGAAGCAATTTACCCAATGTCTCCTCTGACACAAATAAATGGTACTACAATATTTTCATCAGTATTATGCCTTGTTCAAGTGTGAAAAGGATTGACAGTTTCTCTTGTCATCTGAGACAGAGTTGTTGTTCCAAGATTAGGGTGGGAGCTTAGCCTGGCTCCCCCACATTATTGCTTTCACTGCCATCACTTTCTGAATTTGTATCATAATCCCAATCATCCCAATCCTCCCTATATCTGGCCTCTTTGTCCTCCAATTATCCCAATCAATATCATTTTTCAAAGCCTTCTTACTGCCAATGCCTTCTACTCTACACACTTTTGTGTATGTTGCTCTTTCAGCTTTGGACATGCTTCATTTATTCTTTTGCTGTAAACATTTCAATCTATCCAATACACTCTCCAGATTCTCTAGAATTTGTGGGCATACAATTACAATTCCCTTGTCAGTTCTCCCCTTATTCTGTCTCCCCCACCATTCGTTCTGTTAACTTGGGGCCCACTTCATATCATAACCAGTCTTGGTCATTTTCTCATATATTGGCACCTTTGCCACTCACACACTCGGTTGGTTCATTCATACCACTTATTTCATACATACTCGCAACACCTTCACATTCAATGCTTGGTCAAGCCCGTTGATATTCAGTTAACGCTGTCTAGACACCTCTTGTAATTACTGATCCCAACTGCTGTGACATCTTTCCTATATATTTACAGCCCACACCTACGCATTAAAACATACGCTAGCATTTTCTGATCAGTTAACTACCTGACCTGACCTGTCTTAACTACTGTTGAACCCCACAGGGTCTACAGCGGTAACTGATCACAACTGCTGTGAAATCTTTCCCACCGATTTATAGCCTGAAACTATACACATTCAAAACCGCCCGGTCCAAGACACACATGCGCAACAATATCCGAAACCTGACAATACCCTTCACCCTGGTGtcaaaaataacttttgcagttctttttattctattacagacattgcatttaattaaatctatCGGTTAGCATTCTAGCCTATAACTATGAAAgctggttttgtttggtttaaatgtACTCACCCTTACAGGTAGATTGGTAACAGACACAATATGATCAGCCACAGCATGTTCATGATGACTGTGCTTGCAGCATCAAATTCTGCAGTGGATTTACTCTCCATTATCCTCAGAGACTCAGgacatactttattttattcagtgcatGCAAGGGAAGAGCACCCTATCACTCATGATATGATGTAGCAACTCTTAAAGCAATGGCAGCAATACAGAGCAATATATACATGTAGTTTTGGTGGGTGTTTTCAGGGACCTCTGAAGGCCTAATCTATCACAACCAATGATGACATTGGGTTtaaggggagagagaaatggCTTGGCGAAGTGCTCGTTTCGCTGACCATTTTCTGAGGCAGACATCCCATTGCCATCATAGCAGGAGATCACATACTTTTTGTTTCAGGGGTCTTTTGTTTTCTATGTGAGCAATCAAACCGAAGTTACACCCAACGGTATGTCTGCAAGCCTGACTGGCAAAAGCTATTGTCTTTATGTAAACCTGGTCCTCAACCGGCCATTATGGTTAATGCAGAGTATAATCGGTCTCTTAGGAAagttcattttttcttcttcatggcCACAAGTGGTGGCTTCACAGAGAACCAGATTGGATGTGCAGAACAGCTGCACTTCTGCTTGTTTCAGATATTGCAGAATACAGTAGAAAAATAAGATCCTAGTGCAAACAATAAGCCTTCCATTTTGTGGTCAGAAAACCTCAATAAACCCTTCAAGAGATAaaatagaacatcaaataactGATCTCAAATGCCATTCCCTAGCCTAATGTAATGGGAACTACAAGGCCATTGTGCTAATCTGCAGACTTACTTATCCTTACAAAGTACATTCACTGTCCAGACCCTAGAGAAACAAGTTATTCATTCACGGCTAAAGAGAAGCCCGAAATTCCCAGCGATCAAGCACAAACAGTGATTTTAACGTTCTGACTTAGTGTTTTACAGCTTTCATGGactctaaatgtaaatgtaaatagaaAGACATTCATGTTGATAAGGCTAGATTACCCCATTTTAGATTATTAAGGTATACATAATATCACAAGCCCAGTAGATCAAGTACCTGAAACTCATGGGTAAAGTCCCTTTTTGTGCATCCCCATCAGCAATAGTCCAACATATAAATCCAACATATAAATCTCTAAAGAGCAGGCATTTTA

Function

GO: NA

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU57688 True 4806 lncRNA 0.39 2 39622363 39627190

Neighbor

gene id symbol gene type direction distance location
AMCG00013709 yod1,LOC106565882 coding downstream 24753 39594057 ~ 39597610 (-)
AMCG00013710 NA coding downstream 46319 39573024 ~ 39576044 (-)
AMCG00013703 myog coding downstream 211115 39408255 ~ 39411248 (-)
AMCG00013701 LOC107553398 coding downstream 345714 39270881 ~ 39276649 (-)
AMCG00013700 NA coding downstream 353704 39266509 ~ 39268659 (-)
AMCG00013714 NA coding upstream 60507 39687697 ~ 39703006 (-)
AMCG00013713 NA coding upstream 76670 39703860 ~ 39713357 (-)
AMCG00013717 NA coding upstream 120901 39748091 ~ 39749050 (-)
AMCG00013715 NA coding upstream 134149 39761339 ~ 39834756 (-)
AMCG00013718 NA coding upstream 210156 39837346 ~ 39838308 (-)
G46245 NA non-coding downstream 60067 39562097 ~ 39562296 (-)
G46240 NA non-coding downstream 69118 39545571 ~ 39553245 (-)
G46238 LOC103022582,LOC106572854,LOC105023759,LOC105934746,LOC105912002 non-coding downstream 92135 39528947 ~ 39530228 (-)
G46236 NA non-coding downstream 203624 39418491 ~ 39418739 (-)
G46175 NA non-coding downstream 444388 39174555 ~ 39177975 (-)
G46368 NA non-coding upstream 754360 40381550 ~ 40381998 (-)
G46370 NA non-coding upstream 758159 40385349 ~ 40385758 (-)
G46372 NA non-coding upstream 789485 40416675 ~ 40418642 (-)
G46395 NA non-coding upstream 815120 40442310 ~ 40446394 (-)
G46419 NA non-coding upstream 965958 40593148 ~ 40593420 (-)
AMCG00013691 NA other downstream 650784 38942775 ~ 38971579 (-)
AMCG00013685 NA other downstream 838930 38782024 ~ 38783433 (-)
AMCG00013677 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308 other downstream 921289 38697395 ~ 38701074 (-)
AMCG00013669 NA other downstream 1031161 38588979 ~ 38591202 (-)
AMCG00013663 b9d2 other downstream 1076328 38543850 ~ 38546035 (-)
G46333 NA other upstream 646201 40273391 ~ 40275098 (-)
AMCG00013730 NA other upstream 758871 40386061 ~ 40428625 (-)
G46418 NA other upstream 959626 40586816 ~ 40587392 (-)
G46423 NA other upstream 976411 40603601 ~ 40608528 (-)
AMCG00013732 NA other upstream 991153 40618343 ~ 40637228 (-)

Expression


Co-expression Network