G47139


Basic Information

Item Value
gene id G47139
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44698227 ~ 44699767 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58766
CCGgtttaatttacaatacaaagaaTCAGGAAATTAAACCATCAAAGCCATATCCCTGTGGATTCACCGAACcccatttacaaaaaaagcaaataaataattacaattataacaataatggagaaaacaaaaacagaacactaTCAAAATAAGgagacatacacacagaccatcagtcatttaaaaaaggtattCCCCCCGCCCTCTTACAGAGTGCGACAATACGTAACAGCCTTGCTTGTGTGTTGTGAATTTGCTCAGCAAATTTTCATTCTGCCTTTGTTTTCGAATGCATTTGCACTCTCGCCATTAGTGTGTGGCGTCACTGCTCTACAGTAGTGTGGTGTTCCTGAAATGGGCAGCTTTGtggttttgtgaaatgtattggtttttatgttatgttgtGAAAGAGGGTTTTCCTTCCAAAGTTTAACACTGGGAAGTCTGTGCAGTAATTGGTCACACCTTAACCACACTTTCTCTACATTTGACCATAACGTACCTTATGTCCACTACGTATACGATGCTGCAGGGCCTTCTAATCTTATAATGGATTGCCCCTGAGGACTTTATAAATAGATTCTCAACAATACAGGTTCTGGTCCACAAAATCCAGAGCTCCCCCGCCAACATCTGTTCATCTGAATGTGTCATAAACCTCTCACTGATCAACAGCGATGGCTAATAATGCAGAACGGGATCTGTTTCTCAAAGgcaataaacacaaatgtaaccTTGTTTGCATGGTTCTCGTACTACTTGATCAACACCATCCTCTTAATTGTTTAAAGACAAGGAGAGAGGGATAGCGGGAGAGGGGGCATCACACCTGTACCAAGGCCTTTCAGATTTGGCAGTGACATCCTGACTACCAACTGACTTCATCTCACCGAATCAAACATTGCTGTTAAGACTTTAAGAAAAGAGTAAACTACTAGGATGTGCTTTATCGTTGTGTGCTCACATTATCTGAAGAGAATGTGCCTCATCTGTTTAAAAACCTTCATTGCCAATGCGGTTGAGACCCTTGCTATTGAAACTTTTCTATAGATCAGTCTCacgtattgtattatattgtctTCCAGTGAGCATATAAATAGGATGTTGCGAATAACAATTGGGGTGTCATTGTTTGGGAAATAGAATCAGTTTAGTGCAAGAAATGTGAATTGCAAATCTGTGAGTGGAATAAAACGATGCAGTGAATCTTGTCTCTGCAAACTTCACAATGATCTGTTTtttatcaaaatcaaaagcCTTGGTGCCATGTCAACTCAACCTGCATTACGATgtattaaaaagagagaaaagcaattttttttgcaaaaccaggacCTTCCTTTGTGTTATCAGTATGGCGTTACACACGAGCTCCTGGGTTTTGTCAGATGAAACGGGCAGTAAGGGCAGTAAAGCCGTGTGCTTGTCTGGGATCCTAGGAGACCAAACATCCCTAAAGTTGCAATGCTTGTCTAGCATATGTTGTAGTTAACAGAGcgtctgagaaaaaaaaaaaaaaaaaactcctgttGGCTGGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58766 True 1541 lncRNA 0.40 1 44698227 44699767

Neighbor

gene id symbol gene type direction distance location
AMCG00013835 LOC107556298 coding downstream 20728 44671088 ~ 44677499 (-)
AMCG00013832 NA coding downstream 381543 44291848 ~ 44316684 (-)
AMCG00013830 wnt2bb,LOC107562779,LOC107717539,LOC107669677,LOC107679746,LOC107711930,LOC104932064 coding downstream 442185 44242515 ~ 44256042 (-)
AMCG00013831 LOC106566046,LOC106582739,LOC105908306 coding downstream 495780 44186012 ~ 44202447 (-)
AMCG00013828 NA coding downstream 520601 44160652 ~ 44177626 (-)
AMCG00013836 NA coding upstream 31090 44730857 ~ 44733745 (-)
AMCG00013842 NA coding upstream 580009 45279776 ~ 45288602 (-)
AMCG00013844 LOC108265696,LOC107725303,LOC107598961,LOC107734522,LOC107570980 coding upstream 595739 45295506 ~ 45314825 (-)
AMCG00013847 NA coding upstream 615405 45315172 ~ 45315701 (-)
AMCG00013845 LOC103370234,LOC108436315,LOC103028137,LOC108246862,LOC104939458,LOC106513331,LOC108254806 coding upstream 616680 45316447 ~ 45329179 (-)
G47117 NA non-coding downstream 200922 44496986 ~ 44497305 (-)
G47109 NA non-coding downstream 406440 44289055 ~ 44291787 (-)
G47096 NA non-coding downstream 474843 44222386 ~ 44223384 (-)
G47082 LOC100696538,LOC103362809,LOC102199655,LOC108254710,LOC103467398,LOC102777028,LOC108265463 non-coding downstream 549296 44125766 ~ 44148931 (-)
G47055 NA non-coding downstream 575021 44116240 ~ 44123206 (-)
G47153 NA non-coding upstream 109878 44809645 ~ 44809876 (-)
G47162 NA non-coding upstream 262082 44961849 ~ 44963480 (-)
G47168 NA non-coding upstream 266243 44966010 ~ 44966928 (-)
G47180 NA non-coding upstream 404456 45104223 ~ 45104887 (-)
G47185 NA non-coding upstream 568287 45268054 ~ 45268396 (-)
AMCG00013820 tmem167b other downstream 1083648 43609282 ~ 43614579 (-)
G46742 NA other downstream 1997159 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 2242469 42428777 ~ 42455758 (-)
AMCG00013732 NA other downstream 4060999 40618343 ~ 40637228 (-)
G46423 NA other downstream 4089699 40603601 ~ 40608528 (-)
AMCG00013846 NA other upstream 639092 45338859 ~ 45344015 (-)
G47261 NA other upstream 923471 45623238 ~ 45623895 (-)
AMCG00013882 cry4,LOC108413014 other upstream 1219869 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 1262423 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 1375662 46075429 ~ 46083542 (-)

Expression


Co-expression Network