G47717


Basic Information

Item Value
gene id G47717
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47071343 ~ 47075028 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59534
tctggtttatttttttaattcaagttttaattatttagtgcaaatgatattacaaaaaaagtacattacaataattccaggaaatctaaaaaaaagaaaacaaaacacatacatctataataataaaaacaagaacaataatgataataatcatattttcagtatttacaacacacacagtccTGTTCATTTTGAACTTACATTCCATTCCTTTCTCTAAGCAAAGTGCGGGCAGACAGGCCCAGGGCAGCGAGAACGGGCCCATAGGGCTGTTCACGAGAAGCCAACGCCACCTTATCTTTCTCCGAGCTCTCTGTACAGACGCAAACACGTAGCTATAGGAAAcaatctctctgtgtctttatCAGCAATGCACACACCAGGCAGACCTGCCTCGCCTCTGCTGTAAAAAAGCCAGAACCCTGTGCAGTCTCAGCTTGCCGTGTCCTGCTGTTCAGTCCAATCCTACAACCCCATCCCCctggaaaaagagaaaaaggcagTGCACACACTAGCAGAACActccctttttaaaatatatatatgaatttagtATCCTCTGGCCATTTGAGATGTTACCTTTACAGCATGTACTACTGAAGGGAAGCTGTCACATGCAAAATCATTCAGGGTAGGAATTCAAGCGGTCAAAACGCCAcgtttgcaaaaaaacaaaaaaaaccaatCTGCTGTCTGGATTCAGGGTTACATAACTATTTTTAGGATCCAAAGTTGACTGATGCGTTTGGCAAGTGCGCTCTGCTGCTCCTATGCCAGACCCTGCTGGATATAACGGTCACCTACTGGACAAGAGGATCCATTAGACCAAAAATCTGCACCCACAGAAACAGGAGAGGACGATTTTAAGAATAATTACAATATCGAATCTTTTCACAACCgttaatcttattttatttaacaaatgcattaaGATACAGTATAAAGGGAACagatgtcaaataaataaaatgtgccaTAATTCCTTTTCTGCCTCTTATCTTCCTGCTGTACCTGGGTAAATATAGACATATTAACCTGAATGTGTTGGACCAGCTGCTACAACCTCTGTTTAAGCCCCACCCTCTCCAACAGTAAGGGTTGGGGCCTAAACGATTTCCAACAGCAACTCATCGATTACTGGAAAAGCTGTCATGGTGTCGAGGCTGACATAAAACAGTGATGTAAAaactatgtgtatatatatatatatatatataaacattACAATGTTTTAGCACCTTGTAAAATCACCAATACACATCCTATCCAAACGTAAAACATGGTcccaaaactgtttttattttagtagtgTGGATATCCACCGTGTATGTTGGTGGGCAGCCAGCACTCACAtggttagttttattttttccaccacTACACTTCCAAGCCACCTAGGACTCCACAAATCCTTCTACTGAGTGCAGAAAGACACTCCGTATCTGAGCACTATTAAAAATGGATGCTTTCTTAAAGACGGAACGGAAGTTACTTAATGGATTGAGGCCATTATTAGCTCTGAAGTGGGTCGAGGTGGACATTCTTTGCAAGTCTCAGGgggataaaatataaaataataaaataaagtaatcagAAGGCATGTGACAGATTGTGAAAGCTTCTGGAATGGTAAGTTTGGGATTCGtgcagaccaaaaaaaaaaaggggtacaaaggttgttttatatatgtactgtaatgaaattgaaatataaaattgaaaaacGTCCTCCAACAGGGGACGGATGATCAAATAATCTTCAGTAAGAATTAGACATATTGGGCAAGATGATAGAATAAAatgtctttgtctgtctttatCAAAGAGAGAGCAAATCACACTGGAGAGGTCTATACACGAGCCAGCTATTCCTGGAGGAAGAGACATTAATGAGATTAAAGAATGAGAAAAATGAAGGGGAATTTAACTTGTCAAGGTCTCTGGaccaaaatacaatttgttccTCATGCCCTGTAAACATAAAAGCGCAGCATATGGCGGCAATAATACATACTGCTGAGGATACTCCACTGTCTCGTTCTCAggtcattttgttgttgttgttgttgttgttgttggcttccttattattgttatatgaTCAACAGGTCAGATTTACCCCtctttcaacaaaaacaaaagcacatcaacatttaaactgaaaaacgCTTGACAAATCAGACCCCAAAGTGCAACAGTAAGCGCAACGCCACGTTAGAACAGTATTTGAAATGCTTCCATTTAAAACCAAACTCTGGACCACTGTAGTCTTCACCTTGATCATTGGGCACTTGTGTAGAAGTAGGCAATGCTGTTATTTTCTGGCCTTGACAAATTAGTGGCTTTTCCCCCAACACTTAATACTCAATTAATGCTACAACTACTAGAGGAAAGCAATCTAAGAAGGACACGGGGGTGGGATCTACACAAACTATATACAACTGAAAAAGTTAAGACTCCACGAGTCAACGAAAGCCAGTTGGGCTACGAAATGAAGTCACTCTGTAGCCCAATTCATAATTTCACTGGGCATAAGTACCCTCTTACAGTACAACACCAGTCACCCCATCTTACATTCTTCACCAGACTGGGCAGAACAATTAACACACAGTTAAGGTACAGTCTATGTATAGATcaagtacagtatatatataaaaatatatactgtagagTATGAACATGCTCAAACTGAGCAGCAAATACAGAATGGTCaaatcaaaaaagaaataacTTAGAAATTCCCTTtcttgtttcagtttttcacgTCCTCACGGGGGGGCACGCCTCAATCAGCACAGGCCTCGTCCCAAGTCTGGTGGCTCTGCACTCTGCCGGACCCTGCATGGCTTTGGACCCTACAGAGATGGGGAAGACATACTTCTCTCGCGTCGAGGAAGACGTCAAAGCCCATCTCCATTCGAGGACCAACCTCCTACTTCCACCTCCCCAGACCAGAACCCCCCACTCTTGTTCCCACTGAATCTCAGAGCGCTGTGGTCCCACGACAGCTAGAGTAGGCCCGTGTCTGAAGCACATGTCCTCTCTATGCCAGTACCCTGGCTGCCGACTGGTTCAGAGACACTCCATCGCATTGGGGATCTGTAAACACAGCTTTGCTCCGACACCTTGGGTCTCTGTTTGAGCGCGTCGGCCTTTGCAGCGTCCCGCGATTGAGTTCCACCACTGCTTCTCCACGTGTGCGGGGGGTCTGAGAAGGAAAACCTCTTCATCACACCCCCACTGGGGGTATAACTCGGCAAGTCCTGAGGACCAAGCAGCTCAGCTTCTTCAcctcacttacacacacacgcacacacgcacacacacaaacacaatctggGTTAACCGCTCTCACtcagattctctctctctctccttggcCTTCTGTCCATCTCTGTCCGCTCCTCTCTCTCTAGCGAGTAGAGGAGTCCTGCCCGCCAGTTCCCAGCTGGTGCCAGTCCACCCAGTGTGGCCCGGGCTGCAGGGTCTTGAGGGGGATGAAGGTCTCTCCCAGCAGCGTGTTCTCCCAGAAGGCCCCCTCGCCGAGCACGCGCAGGTGGATGACTCTCTGCTGCAGGTCCCCCCGTGGTATCCGGTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59534 True 3600 lncRNA 0.43 2 47071343 47075028

Neighbor

gene id symbol gene type direction distance location
AMCG00013922 NA coding downstream 44962 47024851 ~ 47026381 (-)
AMCG00013921 NA coding downstream 53616 47015056 ~ 47017727 (-)
AMCG00013920 NA coding downstream 71129 46995142 ~ 47000214 (-)
AMCG00013915 NA coding downstream 85673 46976691 ~ 46985670 (-)
AMCG00013916 NA coding downstream 95153 46970259 ~ 46976190 (-)
AMCG00013926 NA coding upstream 26551 47101579 ~ 47112942 (-)
AMCG00013925 NA coding upstream 76063 47151091 ~ 47162001 (-)
AMCG00013929 NA coding upstream 126227 47201255 ~ 47212425 (-)
AMCG00013928 NA coding upstream 138571 47213599 ~ 47217346 (-)
AMCG00013930 LOC108435245,LOC108232143,LOC106519305,LOC106567267,LOC105906848,LOC105906847 coding upstream 155531 47230559 ~ 47240804 (-)
G47661 NA non-coding downstream 232579 46803611 ~ 46838764 (-)
G47538 NA non-coding downstream 832829 46231325 ~ 46238514 (-)
G47391 NA non-coding downstream 1148429 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 1216543 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 1243092 45827965 ~ 45828251 (-)
G47766 NA non-coding upstream 150773 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 420383 47495411 ~ 47495684 (-)
G47809 lrrn2,LOC108425772 non-coding upstream 465535 47540563 ~ 47545591 (-)
G47839 NA non-coding upstream 614817 47689845 ~ 47694894 (-)
G47917 NA non-coding upstream 941533 48016561 ~ 48016838 (-)
G47666 NA other downstream 195973 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 760225 46299161 ~ 46311118 (-)
G47501 NA other downstream 907856 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 987801 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 1097032 45962190 ~ 45974311 (-)
AMCG00013932 ruxe,snrpe other upstream 113567 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 789822 47864850 ~ 47868863 (-)
G47896 NA other upstream 892397 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 1291015 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 1380875 48455903 ~ 48479577 (-)

Expression


Co-expression Network