G47839


Basic Information

Item Value
gene id G47839
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47689845 ~ 47694894 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59711
CCTTTGGCAGTTGCAAAGGCTTGTGGGTAATAAATAGCCTTTATAAGGGTCTCTGTTTAATCCGAGACTGCCCTGTAGTTTAACTCTTGCGTTCCAACTCAACGGGGAGGAAAATACGATTACAATGTCCTGGAAACTGTTCAAATCAAACCTGGTATGTCTCGGGTTTTGGGAAAGATCTGGAGGACATGATTGACCTGTATTTCATAGTGTGTGACGTCCAGCCACCATGAGGGACGATACCGCAGCGCCTGGAAACCGGCCAGAGTCAGAGGAGCCgcactgaggagagagagagctgcccAAGTGGAACAACTGAGTGTGGTGTGGGggcggggtgtgtgtgtgtgttttgtgtgtctgctgtgtgtttgtgtatatgttttttgtgagtgtgtgttttgtgtgtgtgctttgtgtgtgtcagctgtgtgtgttttgtgtgttacgtgattgtgtgtttgtttgtcatgtCAGAGTTAAATATCAGATGACAACACTTGGGGTGaacaggtttttgttgttgttcttgcggaacattttttccctttctttttttcccttgtattgtttgtgtgtgtttgtgtcccaTCAAAACACTTGATGATTCTTTTTTACCAATCAGTCAGTCCTCACACCGGACCACAAGTATTTCATGGTTACACGCAACTTTCCCCAATTGTGTTGTAATGACAGACTCGGTCAGGAGCAATTTTCATGCTtgctttcttctctcttcctaAACTTCCTGAGTCTCTGCTCGAAAgaagaggtggaggaggagaggagtgACGGGAGGAAAGGGGCACCGGGGCTGGGGCTGGAAACTGGACAGAAAAACAAGGGAGTGGCATtcaggagaaggagagagagagagagagagggaaggcaTGACTGGCAAAAAGAGGTGTGGCGTGGTTGCCAGTTAAACAAACAGataattttttaatgaatgataaTTGATTTGTGAAAAAAGATGGTTAGAACAGTAACTATCGGAGAGTCAGAGCTCAGAGGTGTTGTGCGCTTTGTGGCGCGGTCTGCTCTTGTTCAGCGTTCAGCTCTAAGGAGCACTCGAATGCCACGCCGAACATACCGTCTGAAGTTACTTTGCTTTCAGAGTTcaatgtgctttttaatttgGTCCCAGTGATTGATTGTGACGGGTGGCAGGCCTGTTTAATGTCCCGgcttctcttttttaaatatttccccCTCCATTCCCCCCGACAGCTTCTGTTGCCCCCCCGAGCTCTTTCCCTGCTACACACGCTGGAAACTCTCACACCCACCTGCTTGTGTTGTGATGTTTCTAACTggttgatacttaaaaatagaGTTAGAACAAGGAGGACATGTGTGTCTCcgtaattattttcctttcaattcAGCGGCAGGATGTGTGGCACGAAACTCACTGCAGTCAGACTGTAAATCCTTCATTGATCATTGATTGATTAAGTGACCTGGTTACTGGTTTTAAAGTAGTCCAAAATATACACCAGGCCCTCGGTACAGGCGGTATGATTCACCAACCGAATTGAAGGCTTAAATTTCGGTTCGGCACGTGTTCGGGGTTTGATGTAGTGCCCGTTTAGGGAAGCCGtatctttctgtattttctccCGAAGCGACCTGGCGCTTGATCCTATTAGAACTGATGTGTGAGGAgttaagtgttattttaaatttgccGTATATATCACAGGCCGTCGAGAGAGACGTCGGCTTGCAGGGAACCTCGTGCCTTTGCTTTTATGTCCATTTTCCCCCCGGAGTAGTGCGGTGTGGAATGCCGAGTTCCGAGTGACAGGAAGCGCAGGGGGACGGGGAGGAATTTTAAACAGCTGTAAATTGAAATAGATTCTCTTCCCATTgattttttgtctctttttttttttgctttgctggCTGTTGTACAAAGCCTCTCTAGATGCCCATAAATTCTGACTTTATGGCCCGTCTTGCACACAGTAAAAGGCCGCCCACACCTCTGTGGATATCACTCACTGGGACTGGGTTAGGGAATGGAAATGAAGTGGGGGGTTCTGTTCACCTCCTTTGATTGGTTTCTCCTCCGTGTCAGCGTCTTATAATTACTGTTCTTTCCATAGCATTCACTCACCCAGCAGTGTGTGCACCATGCATTTACATCTGGAGTGCCtcgggggtgtgtgtgtatgtgtgtgtgtgtgtgtgcttttaaaactgCCTTTCTGTGTGGTTTCAAAGTGTGTAGGTTAACTACAATATTAATTTCTCTTCAGCTGCAGTGTTATGTATAGATGTGTGCTTGTATTGAAAGGGCCAGGGTGCAGGAGTGTCTGTGGGTCACAGTCAGGTTGAAGCTGTTAAATCGGCGGCGCTGAGCTCTGCAATGATTGTTGTTTTGTCAGTGTCTTCAGCATCTCTCTGTTGATTTGCAGAATTAGGTTAACTTAGAGGCACTTctctggttttgtgttttttaaacccaGAGAAATGCATCTTCATCCTTAAAAATTCACTTCTCCATTGAGTCACTTCAAAAAGGAAagacagaaaggaagaaaggaagaaaggtCTGCAGATACATCTCtgtgtattttcaatatatCATGTGAAGGGTGTGTGTCTCTTAGTGCATATGAAATCCCCTGCAGTTTTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59711 True 2649 lncRNA 0.45 2 47689845 47694894

Neighbor

gene id symbol gene type direction distance location
AMCG00013940 LOC103386459,LOC108250956 coding downstream 65887 47583585 ~ 47623958 (-)
AMCG00013937 NA coding downstream 118070 47567103 ~ 47571775 (-)
AMCG00013938 mdm4,LOC107739268,LOC107675838,LOC107656004 coding downstream 125134 47552134 ~ 47564711 (-)
AMCG00013935 NA coding downstream 258366 47421308 ~ 47431479 (-)
AMCG00013936 NA coding downstream 273463 47410368 ~ 47416382 (-)
AMCG00013942 NA coding upstream 14319 47709213 ~ 47715995 (-)
AMCG00013944 NA coding upstream 154385 47849279 ~ 47857162 (-)
AMCG00013945 NA coding upstream 174531 47869425 ~ 47907166 (-)
AMCG00013947 slc41a1,LOC107698497,LOC106565625 coding upstream 284695 47979589 ~ 48001071 (-)
AMCG00013949 NA coding upstream 310805 48005699 ~ 48014251 (-)
G47809 lrrn2,LOC108425772 non-coding downstream 144254 47540563 ~ 47545591 (-)
G47807 NA non-coding downstream 194161 47495411 ~ 47495684 (-)
G47766 NA non-coding downstream 462591 47225801 ~ 47227254 (-)
G47718 NA non-coding downstream 569244 47057539 ~ 47120601 (-)
G47717 NA non-coding downstream 614817 47071343 ~ 47075028 (-)
G47917 NA non-coding upstream 321667 48016561 ~ 48016838 (-)
G47991 NA non-coding upstream 484373 48179267 ~ 48179685 (-)
G47995 NA non-coding upstream 520981 48215875 ~ 48216209 (-)
G48021 NA non-coding upstream 574450 48269344 ~ 48270564 (-)
G48025 NA non-coding upstream 581842 48276736 ~ 48277321 (-)
AMCG00013932 ruxe,snrpe other downstream 488948 47188595 ~ 47200897 (-)
G47666 NA other downstream 814475 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1378727 46299161 ~ 46311118 (-)
G47501 NA other downstream 1526358 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 1606303 46075429 ~ 46083542 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 169956 47864850 ~ 47868863 (-)
G47896 NA other upstream 272531 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 671149 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 761009 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 1123089 48817983 ~ 48821156 (-)

Expression


Co-expression Network