G48021


Basic Information

Item Value
gene id G48021
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48269344 ~ 48270564 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59936
TGGGACGTGAGAGCACATAAATGCTAACAatgaagggagagggagcataggggaagtCAAAAGAAACAATGCAAGTGCTATTAaggcaaaggcaagagtatgacaaaacattgtatgagtgcaatcttacaggagaatgaaataCTAAATACAAGTACAGTGTGAAaagatgtcttgagtaattgccagaaggaggtcagggacctgtcttgacttcagtgggaaggtcgttccaccacttagggttcagggatgagaaggagcggctctggaggaaggagagtggagaggaggcagagttagtttTCTgacaccggaagaccgcagcggtctggatgggatgtatggagagacgagtgactgaaggtatcttggtgcagtgtggtcgacacagtggtaggtgagggtcaatgtcttgaactgaatgcgtgccgctatcgggagccagtggagggagcggagcagtggagtagtgtgtgcgaatcggggcagagagacaccagacgagccgcagagttctggatgagctggagcggcaggtagtagatgcaggcaggccggccaggagggagttgcagtagtccaggcgggagaggaccagtgactggacgagcagctgagtcgagtagtcggtgaggaagggacggatccgacatatgttgctcaggaagaatctgcaggtgcgtgtcagagtggtgatgtgctgtgagtaggagagcacaggatcgaagGTGACTcttagatttttagcggaagaagaaggagagagtgtggtggattccaaggggattgagatggagagatcagcagaaggtgaggaagagtgggggagaaacaggagatccgatttggagaggttgagcttgaggtggtgcgagtgtatccaggcggagataacagacaaacaggaagagatgcgagaggggatgagagggtcagaagagggaaaagacaggaagatctgggcatcatctgcatagaagtgggaTGCAAAGAGAGGGCCCAGGGAaggagtgtagagagagaacaggagcggggccaggacagagccttggggtacacctgtgaggagatgCTTgcgggtggatgaggaacctcgccatgtcacttggtaggtctggtcgctgaggtaggaggagaaccaggtgagagcagtcccagagattccaaggtcagcgaggcaggagaggaggatggagtgatcgatggtgtcaaatgctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59936 True 1221 lncRNA 0.53 1 48269344 48270564

Neighbor

gene id symbol gene type direction distance location
AMCG00013965 NA coding downstream 4971 48261347 ~ 48264373 (-)
AMCG00013959 NA coding downstream 42233 48220232 ~ 48227111 (-)
AMCG00013957 NA coding downstream 57316 48202579 ~ 48212028 (-)
AMCG00013958 NA coding downstream 80042 48186287 ~ 48189302 (-)
AMCG00013956 NA coding downstream 88767 48179895 ~ 48180577 (-)
AMCG00013966 NA coding upstream 158339 48428903 ~ 48439128 (-)
AMCG00013972 NA coding upstream 246369 48516933 ~ 48520737 (-)
AMCG00013973 NA coding upstream 251986 48522550 ~ 48524089 (-)
AMCG00013974 rbm15,LOC102786942 coding upstream 315067 48585631 ~ 48588321 (-)
AMCG00013976 NA coding upstream 380725 48651289 ~ 48663453 (-)
G47995 NA non-coding downstream 53135 48215875 ~ 48216209 (-)
G47991 NA non-coding downstream 89659 48179267 ~ 48179685 (-)
G47917 NA non-coding downstream 252506 48016561 ~ 48016838 (-)
G47839 NA non-coding downstream 574450 47689845 ~ 47694894 (-)
G47809 lrrn2,LOC108425772 non-coding downstream 723753 47540563 ~ 47545591 (-)
G48025 NA non-coding upstream 6172 48276736 ~ 48277321 (-)
G48044 NA non-coding upstream 38000 48308564 ~ 48344493 (-)
G48047 NA non-coding upstream 59154 48329718 ~ 48339610 (-)
G48082 NA non-coding upstream 190962 48461526 ~ 48498711 (-)
G48086 NA non-coding upstream 208884 48479448 ~ 48484310 (-)
G47896 NA other downstream 294429 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 400481 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 1068447 47188595 ~ 47200897 (-)
G47666 NA other downstream 1393974 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1958226 46299161 ~ 46311118 (-)
AMCG00013964 NA other upstream 95479 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 185339 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 547419 48817983 ~ 48821156 (-)
G48373 NA other upstream 1213936 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 1224163 49494727 ~ 49498630 (-)

Expression


Co-expression Network