G48370


Basic Information

Item Value
gene id G48370
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49453033 ~ 49453872 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60417
AGGTTTCTTGCATCCCTCACTAGCTGATTGGGAGAAGCTGGTGAGGGGCGGGGCCTTGACGACTGCAGCCCTAAAGGACCAGGAAGAGAATCGATGCCAGAGTCAGGTGTCCCCTCAGGGTGTCCCCTCAGGGCATCGCCTCTCGGGCCCGACCCCTGGACGACCTCTCCATCTTGTCAATCCTCTGTACGTTTGTGTGTCGATTAGTTTGGTCCGTCCCAGATGGTCTGCGTTGTCTGCAGAAGTCATGTGGGTTAGTGGCCGATGATTGAGATGCTCTACCTGTGACgcttcccccctcccctcccctcccctcgaGGTCAGAAGTCAAAGGTTAAAGGTCAAAGGTCTTGGTGGAACAGGTAGAGCTCATGATGAAATGCCCCCCCCAGCATGTTCTGGGCTGCACCCCACTTTGCCGGGCACAGCCTCTCTCTGGACTGCGCttgagtttgttttcctttttaatgttttccttttttaaatatgtacatgaaTTAAAGTGACTGTTGTGCTCTGCAggtgttaatattttatttagcgATCTTATGGTTTCTTTTATCCTCATTTGAAgtaaaaaattaacaaaaaaacacgacaaaaaaaaaaaaaaactactaaaaCTTAAATCgaatctttttaaattgttaacaTGACCAGAAAAACCACATTGAGTGTTTGTGTGATACATCTGTGAGGAGAGAAACGAGCGACAATTCGAGAGCTCATTAAACCAGTCTGTTTTAACTCGTTTATATTGTCCTGCCAGTGATAGATGtactgttgctgttgttatcttgaaataattaaaatggtaaataaacaatttcccACACAGAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60417 True 840 lncRNA 0.45 1 49453033 49453872

Neighbor

gene id symbol gene type direction distance location
AMCG00014001 itpr3,LOC106572092,LOC107731245 coding downstream 67382 49354962 ~ 49385651 (-)
AMCG00013997 NA coding downstream 100335 49347284 ~ 49352698 (-)
AMCG00014002 NA coding downstream 122172 49327442 ~ 49330861 (-)
AMCG00013999 NA coding downstream 126891 49320171 ~ 49326142 (-)
AMCG00013998 NA coding downstream 135604 49312310 ~ 49317429 (-)
AMCG00014007 arl8a,LOC107671521,LOC107569762,LOC105900530,LOC107750681,LOC107722853 coding upstream 2755 49456627 ~ 49463170 (-)
AMCG00014008 NA coding upstream 10567 49464439 ~ 49470132 (-)
AMCG00014006 NA coding upstream 28170 49482042 ~ 49486442 (-)
AMCG00014011 NA coding upstream 51594 49505466 ~ 49522620 (-)
AMCG00014012 NA coding upstream 103932 49557804 ~ 49558760 (-)
G48363 NA non-coding downstream 98498 49353692 ~ 49354535 (-)
G48275 NA non-coding downstream 402601 49027284 ~ 49050432 (-)
G48175 NA non-coding downstream 801804 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 906758 48545237 ~ 48546275 (-)
G48092 NA non-coding downstream 946897 48505871 ~ 48506136 (-)
G48398 NA non-coding upstream 83856 49537728 ~ 49595073 (-)
G48430 NA non-coding upstream 159824 49613696 ~ 49613974 (-)
G48433 NA non-coding upstream 164405 49618277 ~ 49618955 (-)
G48437 NA non-coding upstream 168225 49622097 ~ 49623191 (-)
G48439 sars,LOC107697960,LOC107671868,LOC107706967 non-coding upstream 169938 49623810 ~ 49627767 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 631877 48817983 ~ 48821156 (-)
AMCG00013967 NA other downstream 973456 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 1077937 48366043 ~ 48375096 (-)
G47896 NA other downstream 1478118 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 1584170 47864850 ~ 47868863 (-)
G48373 NA other upstream 30628 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 40855 49494727 ~ 49498630 (-)
G48506 NA other upstream 265893 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 267874 49721746 ~ 49724237 (-)
G48510 NA other upstream 274632 49728504 ~ 49729055 (-)

Expression


Co-expression Network