G48439 (sars,LOC107697960,LOC107671868,LOC107706967)


Basic Information

Item Value
gene id G48439
gene name sars,LOC107697960,LOC107671868,LOC107706967
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49623810 ~ 49627767 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60514
agcacgtgcacacgcacacactcaggCAGGAGCGGCTCGTGTCTGTTGGAACTGTTTATTTATGCTGCTACACTGAACATCCGACACAAAGAGAAGCAGAGACAAGATTTGATTCCCCAACACCCAGGAACACCCGgacagacggacggacagacggacaggcGGACAGACAGGTAGGTCCTGGAATCAATGTGCGTGTGTCTAGGAGTCGTTGACGGACATGTTCTCCACTTGGTTCTGGAGGCCCGGGTCCACCAAGCCCTGCTGTTTCTTCTTGCCTCCATCCTGCTGCTTCTTCTGCTTCTTGGACAGCTCCTGATCGATGGGCGCCGGCTTCACGAACCGGATCATCTCTGTCAGGCCTGGGCATGAAGCAGCGCAGTTTCTCGGGGATGCGCAGGCGCCGAGCCTGGTAGTCGGTGCAGTTGGAGCAGGAGACGAGCTCACGAAACGCCCCCGACCCGGGGAACCAGGCCTCCAGGTCCAGCTTCTTACTGGCAGCGTGGTTCAGAGAGCCTGCGCACACAactgatacactgatacacacaatGCTatacaacacactgacacagcaacACATTactatacaacacaacacactgatacacacagcAACACTACACACTGATACGCACTATTACACACTACAACACTTCACACAGATGCACACCACTGATACACACAGATAAAGCAACACAGcaggcaggcaggcaggcaggcaggcaggcccACCTGAGACGATGTTGACGATGCGGTAGGGGATGCCCAGCGACTGGTAGAACTCCTCCGCTGTGCCGATCATCTCGTCCATCATCTCCCAGGACTTGTTGTCGTGCGGAGAGGCGTAAACAAACTGCTCGATCTGATCAACACAACCAACCAATCAGACACAGCCAGGCCAATCGGGAAGGCAGTCAACGCCACTTCCACTGAGAGGAGGGGCTACAGTGAGAGATCAGCCGTGGAAGGAGGAgaacagtcacacagacgcacCTTCTCGAACTGGTGCACCCTGAAGATTCCGCGCGTGTCGCGCCCGTGGGAGCCCACCTCCTGGCGGAAGCAGGTGGACAGGCCGGCGTAGCGCAGGGGCAGGTCCTCGGGCCGCAGCCACTCATCCCGCAGGAAGGCGGCGATCGGCTGCTCCGACGTGGCGATCAGGTACTTCTCGTCCACAGTGGCGTCCTCGGCCCGCTCGCTGCCCTTCCCGATCACCTG

Function

symbol description
sars Predicted to enable several functions, including nucleic acid binding activity; protein homodimerization activity; and serine-tRNA ligase activity. Predicted to be involved in negative regulation of angiogenesis; negative regulation of macromolecule metabolic process; and seryl-tRNA aminoacylation. Predicted to act upstream of or within translation. Located in mitochondrion. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; egg cylinder; and genitourinary system. Human ortholog(s) of this gene implicated in intellectual disability. Orthologous to human SARS1 (seryl-tRNA synthetase 1).

NR:

description
PREDICTED: serine--tRNA ligase, cytoplasmic

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60514 True 1218 lncRNA 0.58 4 49623810 49627767

Neighbor

gene id symbol gene type direction distance location
AMCG00014023 NA coding downstream 16616 49595783 ~ 49607194 (-)
AMCG00014012 NA coding downstream 65050 49557804 ~ 49558760 (-)
AMCG00014011 NA coding downstream 101190 49505466 ~ 49522620 (-)
AMCG00014006 NA coding downstream 137368 49482042 ~ 49486442 (-)
AMCG00014008 NA coding downstream 153678 49464439 ~ 49470132 (-)
AMCG00014024 NA coding upstream 50553 49678320 ~ 49680362 (-)
AMCG00014034 taf8,LOC106572622,LOC107756368 coding upstream 61912 49689679 ~ 49694164 (-)
AMCG00014035 NA coding upstream 70094 49697861 ~ 49703373 (-)
AMCG00014036 NA coding upstream 122701 49750468 ~ 49757241 (-)
AMCG00014046 NA coding upstream 155505 49783272 ~ 49788746 (-)
G48437 NA non-coding downstream 619 49622097 ~ 49623191 (-)
G48433 NA non-coding downstream 4855 49618277 ~ 49618955 (-)
G48430 NA non-coding downstream 9836 49613696 ~ 49613974 (-)
G48398 NA non-coding downstream 28737 49537728 ~ 49595073 (-)
G48370 NA non-coding downstream 169938 49453033 ~ 49453872 (-)
G48494 NA non-coding upstream 35325 49663092 ~ 49675750 (-)
G48508 NA non-coding upstream 97968 49725735 ~ 49726249 (-)
G48509 NA non-coding upstream 98521 49726288 ~ 49727007 (-)
G48512 NA non-coding upstream 106142 49733909 ~ 49734172 (-)
G48517 NA non-coding upstream 120822 49748589 ~ 49749282 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 125180 49494727 ~ 49498630 (-)
G48373 NA other downstream 139043 49484500 ~ 49484767 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 802654 48817983 ~ 48821156 (-)
AMCG00013967 NA other downstream 1144233 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 1248714 48366043 ~ 48375096 (-)
G48506 NA other upstream 91998 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 93979 49721746 ~ 49724237 (-)
G48510 NA other upstream 100737 49728504 ~ 49729055 (-)
G48516 NA other upstream 117179 49744946 ~ 49747551 (-)
AMCG00014043 tmcc2 other upstream 236555 49864322 ~ 49930152 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G835263 LOC106572754 non-coding NC_048573.1 CM023227.2 69005446 ~ 69012198 (+)