G48494


Basic Information

Item Value
gene id G48494
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49663092 ~ 49675750 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60588
CAAACTCAGGTTTATTGTCCTAAAAAGCAGctgggagggagaaggagaatcGAAACGAGAGAGACTCCTCGGCACAGTAgtcaaaaaagtaataaataaaaatacctgcttaaaaaaaagcatCCGAACAGAAAAGGAGACGGTGGATCCCTACAGTCAGGGTCGTGAAACAGGCttttcattcaaaaatatatttctagcTATCGCCGTCTCAGAACGTACAGGCAGCCGTGGCTCTGGGGCGGCTGATCcctggggggccggggggctgGTCTCTGgtgtgcaattattattattattattattattattattattattcctatttCCCACGTGAATATAGGTTGGATCAGCGATGCAAACTAGACTTATAGAAACAGTCCAATTGTAAACAGTAACTGGAGTCCAATGGGGTCGCACACCAGAGACCGGCCTGGACAACATCAGCACAGCAGGGGTCTCAGCACGTGGCCCAGAGGTCCCCCAGGATCCCCAGAGAGCAGGACCGGCCCGCGGGCTCCGGGcagaccccacagacacaccagacacaacacacacagccctggcCTTCGGACAGGGGCATTACAGGGtatagaaatgtgtgtgtgtgtgtgtctcagagGGAAGACGGGGCCCTGTGCTCAGTAACACAAAGAACAGAGGGAGAGTCGGACACACTGAGCCACTGATAAGAACGtcgtgttgtgttgtgttgtgtgaagGTCCAGGCGTGTGTGTGAGCTCCGTCCCGCCCGCGGCTCTGCTCTCCACAGTCCTACAGTGCGGGGCTACACTGCTACACTACTCACATTATACACAACCTATACAGTATGAACAGCTCGTCTCCAACAGCAGTTTCTcctcttaaataaaaacaacaacagatacaAAATGTCCTTCAAGTCAGAAATCTTTCCGAGTCTTTTCtcctgtttgtttcagtttagttGCAGAGTCTCGTAGGAACAATCGCTATAAAATTTCCtccaaagaaagagagaaaaagtagAAAATCCTCGATACAGTCCGGCGTCGGCAGCTTCTTCATGTCCAGCGTTTTcacatgtttctttatttacattttgtctgtATCCCAGTGTAATAACAAAATCAAGGCTTGGTGGTAAAAGGCAGGTTTCTCACACTCGgccactcacactcacacacacacacacgtactcactcactctctcacagtcacacacaatcaatctcacacacacacacacacacacacactcacacactcactctcacagacacactcacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60588 True 1275 lncRNA 0.48 2 49663092 49675750

Neighbor

gene id symbol gene type direction distance location
AMCG00014023 NA coding downstream 55898 49595783 ~ 49607194 (-)
AMCG00014012 NA coding downstream 104332 49557804 ~ 49558760 (-)
AMCG00014011 NA coding downstream 140472 49505466 ~ 49522620 (-)
AMCG00014006 NA coding downstream 176650 49482042 ~ 49486442 (-)
AMCG00014008 NA coding downstream 192960 49464439 ~ 49470132 (-)
AMCG00014024 NA coding upstream 2570 49678320 ~ 49680362 (-)
AMCG00014034 taf8,LOC106572622,LOC107756368 coding upstream 13929 49689679 ~ 49694164 (-)
AMCG00014035 NA coding upstream 22111 49697861 ~ 49703373 (-)
AMCG00014036 NA coding upstream 74718 49750468 ~ 49757241 (-)
AMCG00014046 NA coding upstream 107522 49783272 ~ 49788746 (-)
G48439 sars,LOC107697960,LOC107671868,LOC107706967 non-coding downstream 35325 49623810 ~ 49627767 (-)
G48437 NA non-coding downstream 39901 49622097 ~ 49623191 (-)
G48433 NA non-coding downstream 44137 49618277 ~ 49618955 (-)
G48430 NA non-coding downstream 49118 49613696 ~ 49613974 (-)
G48398 NA non-coding downstream 68019 49537728 ~ 49595073 (-)
G48508 NA non-coding upstream 49985 49725735 ~ 49726249 (-)
G48509 NA non-coding upstream 50538 49726288 ~ 49727007 (-)
G48512 NA non-coding upstream 58159 49733909 ~ 49734172 (-)
G48517 NA non-coding upstream 72839 49748589 ~ 49749282 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 164462 49494727 ~ 49498630 (-)
G48373 NA other downstream 178325 49484500 ~ 49484767 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 841936 48817983 ~ 48821156 (-)
AMCG00013967 NA other downstream 1183515 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 1287996 48366043 ~ 48375096 (-)
G48506 NA other upstream 44015 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 45996 49721746 ~ 49724237 (-)
G48510 NA other upstream 52754 49728504 ~ 49729055 (-)
G48516 NA other upstream 69196 49744946 ~ 49747551 (-)
AMCG00014043 tmcc2 other upstream 188572 49864322 ~ 49930152 (-)

Expression


Co-expression Network