G48509


Basic Information

Item Value
gene id G48509
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49726288 ~ 49727007 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60604
CTGGGAGTAGGGCGTCTGTGCGGCTGCGCTCCAGTCCGGGCCGGCGCTGGTGTCCTGGAACACAGACAGGATCCCGTTCAAACACAGGGCAAACAGGATcttcacgtgtgtgtgtataaatacatacgtgtgtgcgtctctctgtgtgacTCACCCACTTCCTGTCGGGCGCGGGGGGGCTGGCGGGGCTGCCCTGCAGGGGGCTGGCCGAGGCGGAGGAGGTGGGACTTGACAGGGAGCTGGGGCTGGGGAACAGCGGGGGCGCGGTGGGGGGCGCATCCTCACCAGAGTCCTGCAGCAGAGACTCAGCCCGGTCCACCAGCCGGGAGAACGTCTTCACTGCCTTGGGCAGCactgcagagagggagagagagagtgagagtcgGCCCTCGGGTCCCCATGCCCGTGCCCCCCGCACCCCCCGGCCCCGACGCTCACCACGGCACAGTGTGAGGGACTGGCGCAGGCGGCGCGTCTCGCGGGCGGAGCGGGCCAGCTTGGCGCGCAGGACCTTGATCTCGGCAATGAGGTCATCCTTGGAGCGCCGGAACAGCgcagcctcctcctcctcccagtcGCTGTCGCCGCGCGGCGCACACTCCGGCCCTGCCGCCGGCTCGCCCTGCTCCCGCTGCAGGGACAGCTCCAGCTGGGACAGGATGTTGAGGGAGGGGGCGGCGTCCAGGTCTGGGGGGTTGAGGGCCGGCCTCTTCATCGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60604 True 720 lncRNA 0.69 1 49726288 49727007

Neighbor

gene id symbol gene type direction distance location
AMCG00014035 NA coding downstream 22915 49697861 ~ 49703373 (-)
AMCG00014034 taf8,LOC106572622,LOC107756368 coding downstream 32124 49689679 ~ 49694164 (-)
AMCG00014024 NA coding downstream 45926 49678320 ~ 49680362 (-)
AMCG00014023 NA coding downstream 119094 49595783 ~ 49607194 (-)
AMCG00014012 NA coding downstream 167528 49557804 ~ 49558760 (-)
AMCG00014036 NA coding upstream 23461 49750468 ~ 49757241 (-)
AMCG00014046 NA coding upstream 56265 49783272 ~ 49788746 (-)
AMCG00014048 NA coding upstream 64336 49791343 ~ 49794766 (-)
AMCG00014047 NA coding upstream 69839 49796846 ~ 49804601 (-)
AMCG00014045 NA coding upstream 87042 49814049 ~ 49818276 (-)
G48508 NA non-coding downstream 39 49725735 ~ 49726249 (-)
G48494 NA non-coding downstream 50538 49663092 ~ 49675750 (-)
G48439 sars,LOC107697960,LOC107671868,LOC107706967 non-coding downstream 98521 49623810 ~ 49627767 (-)
G48437 NA non-coding downstream 103097 49622097 ~ 49623191 (-)
G48433 NA non-coding downstream 107333 49618277 ~ 49618955 (-)
G48512 NA non-coding upstream 6902 49733909 ~ 49734172 (-)
G48517 NA non-coding upstream 21582 49748589 ~ 49749282 (-)
AMCG00014033 NA other downstream 2051 49721746 ~ 49724237 (-)
G48506 NA other downstream 4762 49719765 ~ 49721526 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 227658 49494727 ~ 49498630 (-)
G48373 NA other downstream 241521 49484500 ~ 49484767 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 905132 48817983 ~ 48821156 (-)
G48510 NA other upstream 1497 49728504 ~ 49729055 (-)
G48516 NA other upstream 17939 49744946 ~ 49747551 (-)
AMCG00014043 tmcc2 other upstream 137315 49864322 ~ 49930152 (-)
G48570 tmcc2,LOC106583086,LOC106565656 other upstream 143986 49870993 ~ 49918397 (-)

Expression


Co-expression Network