AMCG00014100


Basic Information

Item Value
gene id AMCG00014100
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1799682 ~ 1813298 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014100
GCGCTCTGCTCTCTCCCTGCTCGGGACCGGGATCCTCTGCAGCGCTCGCCTCGGCTTTGATTTATACAGACAAGACCGCAgagccggagagagagagggagggagagagagagggagagagagagggagggagagagcgagggggCAGGACTTTTTTTCTCTAGTGCTTTTAAGTGGaaactttgtgttttgtttgaaaagttCAGTGCAGCCCCTGcctgctctctgtctctttctccgtcttctctctctttctccctctcggtttcttttctgtctccaatgtctttgttttttcgtctttttatacttttccgAGGGAGTCTAAGTATCAAGAGGCAATGTGCGACCAAACCAGACCTGCTTCATATAATTTTCTaagttatttttctaaattattggtattattaataataaagatattcATCCTATTTTGATCGAGGGTCAATATTGCAGCACAGTATTTATATGCACCGCCGGTTCCTGTGGGCACTGAAGATGACATCCCTCTGTTGCGTTTTCTCGGCCAGAGAGAGCATGCTGCTGTTCAAGTTTCTGCTGCTCTGCGCCCTGGAGATCCGCTCGGACGCCACCAACTCCAGCCTGGCAGCGGGCACCGCTTCTCCACCTGCCGCCGAGCTGCCCCCCCATGGGCGGGCACACAGTCAGAGGAGGAGGCATGGCGTGGTGCAAAACATCGACCAGATCTACCACGGTGGTGGCAAGATCGGCTTCATCCTTTACGCGGACGGGAAGAGGTTCTTGTTGGATATGGAGAGGGACGAGTCCCTGCTGTCCCCGCACTTCAGCGCGCAGTATCAGGACGCGCTGCGGGGGGCCAGCGGGCACCGGGCGCCACCGCACAAGGAGTGCGTTTACCGTGGCACCGTGGACTCGCGGCCCGAGTCGCTGGCTCTGTTCAACCTGTGCGGGGGCATGGAGGGCTTCTTCGCTGTGAAACACGCCCGGTACACCATCAGACCCCTGCTCAGGGCCAAGGGACATGAGGACGAGGTGTACCGGGCAGAGGCGGGCAGGGACCGGGCACTGCACCTCTACACCCGGGAGAGCTTCCTCTTTGAAGCCCTGCCCGGGCGGGAGAGCTGTGGCACCAGGGGCGGTGCGAGGACGCATAACAGGGCTGCGGAGAGAGCGGGTCGCTGGGGTCAAGCTCGGGTTCATGGGCACGAAGAGAGGACAGGCAGCGAGGAGCAGCAGTGGGGGCTCCCCCAGGTGGTGCCCCACAGCCCCCCGGGGCGCCAGAGGTCTCGCCGCTCGGTGTCCCGGGCCAGGCATGtggagctgctgctggtggCGGACGAGTCCATGTCCAAGAAGTACGGCAAGGACCTGCAGCACTACCTGCTCACGCTGGCCTCCATCGCCTCCAAGCTGTACGGGCACGCCAGCATCGAGAACCCCATCCGGCTGTCCGTGGTCAAGGTGGTCGTGGTGACGGACAAGGAGAAGGGGCTGGAGGTCAGCAAGAACGCCGCCGCCACCCTGAAGAGCTTCTGCAAGTGGCAGAACCAGCAGAACAAGCTGGATGACGACCACCAGCAGCACCACGACGCAGCCATCCTGTTCACCCAGCAGGACCTGTGCGGACACCACTCCTGCGACACGCTGGGCATGGCTGACGTGGGCACCATCTGCTCGCCCGAGAGGAGCTGCGCCATCATCGAGGACGACGGGCTGCACGCCGCCTTCACCGTGGCCCACGAGATCGGTCACCTGCTGGGTCTCTCCCACGACGACTCCAAGTTCTGCGAGGAGAACTTCAGCTCCAGCGAGGACAAGAGGCTCATGTCCTCCATCCTGACCAGCATCGACGCCTCCAAGCCCTGGAGCCGCTGTACATCAGCCACCATCACCGACTTCTTTGACGACGGCAATgCGGAGTGTCTCCTGGACCTCCCGCGGCAGCCCATCCTGGGGCCCGAGGAGCTGCCGGGCCAGAGCTACGATGCCATCCGGCAGTGCAAGCTGGCGTTCGGGCCGGAGTACACCATGTGCCCTGGGATGGACGTGTGTGCCCGGCTGTGGTGCGCCGTGATCCGCCAGGGCCAGATGGTGTGCCTCACCAAGAAGCTGCCGGCAGTGGAGGGGACTCCCTGTGGGAAGGGCCGCATCTGTCTGCACGGCAAGTGTGTGGACAAGACGCGCAAGAAGCACTACTCGgcctcCAATCATGGCAGCTGGAGCTCCTGGGGCTCGTGGGGGCAGTGCTCCCGGACGTGTGGGGGGGGCGTGCAGTTCGCTGAGCGCCAGTGCAACAACCCCCCCCCGCGCAACAACGGCCGCTTCTGCACTGGCAAGAGAGCCATCTACCGCTCCTGCAGCGtcaccccctgccccccccacagtaagAGTTTCCGTCAGGAGCAGTGTGAAGCCCGTAACGGGTACCAGACCGACCCGAAGGGGGTGAAGACGTTTGTGGAGTGGGGGCCCAAGTACGCGGGGGTGCTGCCAGCAGACGTGTGCAAGCTGACCTGCCGAGCCAAGGGCACGGGCTACTACGTGGTGTTCGCACAGAGGGTGATCGATGGGACAGAGTGTCGTCCCCACAGTAACTCTGTGTGCGTGCGGGGGAAGTGCATCCGGACAGGCTGCGACGGGATCATCGGCTCCAAGCTGCAGTTTGACAAGTGCGGCGTGTGTGGGGGGGACAGCACCAGCTGCGTCCGGGTGATCGGCAACTTCACTAAGAGGAGtAAGGGCTACACGGACGTGGTGAAGATCCCCGAGGGTGCCACACACATCAAGGTCCGGCAGCACAAGCCCCGGGATGAGACGCGCTACACAGCCTACCTGGCGCTGCGCCGCCCGGGGGGCGAGTACCTGCTGAACGGCAAGTTCATGATCTCCACATCCGAGACCATCATCCCTCTGAACGGCACCGTGCTCAACTACAGCGGCTGGAGCCAGCGGGATGACTACCTGCACAGCATGGGCCCGGGGGCGCTGCGCGACGCGCTCACCGTGCAGATCCTGGCCACCGACGCGCACCAGCCCCTGGACGTGCGCTACAGCTTCTTTGTGCCCAAGAAGGTGGCGCAGTCCTCGCCCGCGCCCGCGCCCACACACGCACCCGCGCCCAAGTCCCCGCAGTGGGTGGCCGGACCCTGGCACGCCTGCTCCCGGAGCTGCGACGCGGGCTGGCAGACGcgcacagtgcagtgcagggacGGGCAGGGCCGGCTGGCAAAGGGATGCCCACTGCCCAGCCGGCCCTCCGCCTTCAAACACTGCCAGCTCAAGAAGTGCTGaggactgagacacacacacacacctggactCGCTTTTGTACTATACAGTTACTATTGTTATTAcagatattattataattgttattgtaattattaacaattattgtcattatgattattattatgaatgtctgttgttttgttgttacgaTGTGAATGTGTTGTGTCGGCGTCCTGTCCACCCACCTGCCTGCTGCCCAGCCCCGCTCCACACACCGCGCCCCACGCTGGGTCTCAACCGGGGCTCAGATGTCACACTTGACTTTTTCGTTTTGGAAGCCAAGCTGCTGATGAAGGACTGAGCCGTCCCTGGCTGTGTGGGAGTCATGAATGTGTCCCTCGGCGCAGAGACAGACACGGGCTGGTGGGCTCAGGTGAGAGGTGAGAGGTGAGAGGAGCAGGTGGGCACACGAGGGCGACACCCTGGAGACAGCGAGGACGTGGCACTCACCGGTCCAAATCAAGAGGGGCTGACCTGCTCCCCGTGCACTGGGACAGCGCAGTGtgtgccccccgccccccaacaGATAGGGGTCTGGACGCTCTGTTCACTGAGAGGCTCCTGCCTCCTCGTGTT

Function

GO: NA

KEGG:

id description
K08620 ADAMTS5; a disintegrin and metalloproteinase with thrombospondin motifs 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014100 True 3849 mRNA 0.61 8 1799682 1813298

Neighbor

gene id symbol gene type direction distance location
AMCG00014095 NA coding upstream 235108 1545327 ~ 1564574 (+)
AMCG00014096 NA coding upstream 254457 1541410 ~ 1545225 (+)
AMCG00014089 NA coding upstream 366074 1412350 ~ 1433608 (+)
AMCG00014094 NA coding upstream 407744 1390961 ~ 1391938 (+)
AMCG00014093 NA coding upstream 417202 1381500 ~ 1382480 (+)
AMCG00014101 NA coding downstream 12557 1825855 ~ 1833360 (+)
AMCG00014102 app coding downstream 45380 1858678 ~ 1869442 (+)
AMCG00014103 NA coding downstream 59451 1872749 ~ 1878960 (+)
AMCG00014106 NA coding downstream 108041 1921339 ~ 1925062 (+)
AMCG00014112 NA coding downstream 195304 2008602 ~ 2022266 (+)
G67699 NA non-coding upstream 523466 1275991 ~ 1276216 (+)
G67698 NA non-coding upstream 549368 1250099 ~ 1250314 (+)
G67690 NA non-coding upstream 776869 981839 ~ 1022813 (+)
G67685 NA non-coding upstream 994936 804537 ~ 804746 (+)
G67684 NA non-coding upstream 998218 801264 ~ 801464 (+)
G67792 NA non-coding downstream 7275 1820573 ~ 1821758 (+)
G67789 NA non-coding downstream 26867 1840165 ~ 1842445 (+)
G67882 NA non-coding downstream 264005 2077303 ~ 2077602 (+)
G67899 NA non-coding downstream 335151 2148449 ~ 2148654 (+)
G67907 NA non-coding downstream 520193 2333491 ~ 2333944 (+)
AMCG00014099 NA other upstream 302078 1479919 ~ 1497604 (+)
AMCG00014061 NA other upstream 1552680 136864 ~ 247002 (+)
G67577 NA other upstream 1692560 58449 ~ 107122 (+)
AMCG00014104 cyyr1,LOC107751099 other downstream 22134 1835432 ~ 1838125 (+)
G67801 NA other downstream 65793 1879091 ~ 1881041 (+)
AMCG00014111 NA other downstream 86922 1900220 ~ 1902687 (+)
G67896 NA other downstream 313574 2126872 ~ 2130145 (+)
AMCG00014146 NA other downstream 893542 2706840 ~ 2710329 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000926 adamts5 coding NC_007112.7 CM002885.2 691738 ~ 714626 (-)