AMCG00014171


Basic Information

Item Value
gene id AMCG00014171
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3339352 ~ 3370944 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014171
AATAATGTATTCCCTGTTTTGTAATGCCTGTGTCTAATTAGTTGTTCTGTCTGTATTACAGGAGACAAATGAAATTGTGGccattaagaagttcaaggacAGCGAAGAAAATGAGGAGGTCAAGGAGACGACGCTGCGGGAGCTCAAGATGCTCCGGACGCTCAAGCAGGAAAACATCGTGGAGCTGAAGGAAGCGTTTCGGCGGCGGGGGAAGCTCTACCTGGTCTTCGAGTATGTGGAGAAGAACATGCTGGAGTTGCTGGAGGAGATGCCGAATGGAGCCCCATCGGATAAAGTGCGAAACTATATCTATCAGTTAATCAAAGCGATTCACTGGTGCCACAAGAATGATATTGTCCACCGAGATATCAAGCCTGAAAATCTTCTGATCAGCTGTGACGATGTCCTAAAGCTGTGTGATTTTGGCTTCGCCCGGAACCTGTCGGAAGGCAGCAACGCCAACTACACAGAGTACGTGGCCACCAGGTGGTATCGCTCGCCGGAGCTGCTCCTGGGGGCCGCCTACGGCAAGGCAGTGGACATGTGGTCCGTGGGCTGCATCCTGGGCGAGCTGAGCGACGGGCAGCCCCTCTTCCCAGGTGAGAGCGAGATCGACCAGCTGTACACCATCCAGAAAGTGCTGGGGCCGCTGCCGCCCGAGCAGATGAAGCTCTTCTACGGCAACCCTCGCTTCCATGGACTGCGGTTTCCTGCAGTTAGCCACCCTCAGACCCTGGAGAGAAGATACCTGGGGATCATTAGTGGCGTCATGTTAGACCTGATGAAGAACCTCTTGAAGCTGAACCCGTCAGAGCGGTATCTGACCGAGCAGAGCTTGAACCACCATGCCTTCCAGACGCAGCGGCTGCTGGACCGGCCCAGTGCCGCCTCCCCGCCCCGCTCCTCCAAGAGGAAGTCGTACCATGGCGAGAACAACGCTGCCTCCAACAGAAACCATGGGAGCAAGAGCTCGGGCCTGCAGTCCCACCACCGGTCCAACAGCAAGGACACCCAGGCCCTGGCCTCCAGCCTGCCCCGCGCCGAGGATCTGCACCCCAACAACGACAGCTTCCTCAACGGGAACCTGCCTCCCCCGGCTGCCCTGAGCCCCACCCTGCACCCCAAGAACTATCAGCCGCAGACCCTCAACcgctccggctccagcagcAAAGACCTGGCCAACAACAACCTGCCCCACCTGCTCAGCCCCAAGGACGCCAAGTCAAAGACAGAGTTCGACTTCAACGTGGTCCCCAAGGCCCCCGACGGGCCCGGCACCAAGTATCTGAAGTCCAACTCCCGTTCGCAGCAGAACCGCCACTCCTTCATAGAGGGCAAGACTGGCACGCTGCAGTCAGGTGAGAAGCACAACCGCCACAGCTACATGGAGTCATCCCATGGCTCCATGCCGGCGCCGTCCAAGAACGCGCCGTCCTACCTGAGCCTCTCCAAGAGCCACGGGGCTCTCAGTGACTCCAAATCCGTGGGCAACCTCAGCGAGGCGCGTGCACACCTGGAGGACCCCAGCTCGCGCTACTTCCCCTCCAGCTGTATGGACCTCAACGCCCCCGGGAGCCCCTCCGGACGGCACGGCGAGGTCCGCCCCGCTCTCAGCCCCTCGGGGCGCAGCAACCCGCGCATGGAGAGTGGCACGCTGGACTCCCGCCGGTCCTCCTCCCGCCACGCCAAGACCCTGGAGGAGATCAAGTCTCCGGAGCTGCTGGACGGCAAGGGAGGCGGGGGGCATGCCCACTCCCTGTCCGCGCCCCACGAGTCCTTCCCCTACGGCCTGGGTTACACCAGCCCCTTCTCCTCGCAGCAGCGGCCCCACCGCCACTCCATGTACGTGCGCAGGGAGCGGCCGCGCGCCCACGGGCCCGACACGGGGCTCACAGTGGGGCAGGGCATGCCGTCCCGCGCCAGCAGCCTGCAGCTCCTCTCGCCCCAGGTGCAGCACCGGACTCTCAACCGGCACTCGGTGGGCTCCTCGCGGGAGGACTGCACCGAAGACATGAGCAGGAGTGACCAGTCCCCTTCAGAGGTGACCCATTCCCGACCCCCGATTAAAGACTCCACGCGGGACAACACAGCACCCTTTCACACACAGCGCCAAAAAAGCGAGGTGGCAATGTACCATGATCCACACCCGGAAGACGGGGCGTCCTCGAAAGAAAACCGCATCCTTTACACCGACTCCATGCCCAGACGAGTGGGCAGCTTTTACAGAGTGCCCTCACCTCGGCCAGACAGCACGTTCCACGACAGCGGGGTCCAGAGCCGGGGACCCTCGGTGCCTGTGGACAGCTCCTCCCTCTCCAACCACTCCAAGAGACAACCTGCCTTTGACCCCTGgaaaaacgCAGAGAATGTGAACATCAATCCCCCCGAGCCcacgaaagagagagagaaacagggcTTCTTCAGAGcgatgaagaagaaaaagaagaagtcTCAGACGGTTCCCAGCGATGGGCAGGACCACCTGGCCATACAGAAGACCGTCCGACCCTCAAACCACCAGAGTAGCCGCCACAGAAACCGGGAccgggacagggacagggacagggaccgGGGGGAAAGAGACCGGGACCGGGACCGGGGAGAACGAGACAGGGACCGGGGGGAGCGAGAAAGGGAGCTTGAGAGAGAGTGGCCTCCTGAAAAGATAGCAGAAGTCCATGCTCAGaGCCACCAGCCGCTGAAGTCCCTGCGGAAGCTGCTGCACCTGTCCTCCTCGTCCGCCAACCACGCGGCCCCCTCCGAACTGCGCTTCCAGCCCCTGCCCAACCCGCCCTCCAAAGGGGGCTTCAGCGAGGGACGGGGCCACGCCAGCAGCGGCTCCTCGCAGCCCAAGAGCCGCCAGGCCTTCCAGCTTCCGGGACAGATCGAGTCCAGCTGGCACGTGTCCGCCGCGCTGAACCGCACCACCGCCGCCGACGGGACCCCGTACCCCGACCAAATGGCGGCGAAGGGCGGCCAGAACGGGCACAGCTTCAGCCGGTCTTCTCGGTCTCGGATGCCAAACCTCAATGACCTGAAGGAGACGGCTCTGTAGGGTCGCCAGCACCCCCCGACACCCGAACCAGAGACCCCCTCCTCTGCCCTCGCCTCTGCTCTCCTGTCCGCTGCCTAGTAAACACACAatactgaaaacagaaataaaaccatGTCAAAGTGGGGTTTGTAAAGCAGGTTTGCCCTTCGCCACGAAGGTCGTGTTCGAGATATACGtcttaagttttttttaagcttccATATTTGAtagaatttgtaatattatttatgaagtTCTGATGATTCTGTTAttactttcttgttttaatataaatatgttacaGTTACAAaaggcaattttaaaatatggagGGAAAAGAAGAGTGCAAGAGCTTTAGTttccataaaaaacaaaacgacaaaaaaaaaaaaaaaagaaactttcCCCATAGTAGTTCTATATTTCATCAGGAGTATTTTGATCTGGGtgtgtctttaaatatttagttttttagatCTGACAGTATTGTTGTGACAATATATACCATTgggttttcttttcagtttctttttttcctgacaGTGTTTTAGAATCTAAACCCAGTGACCTAATATTATGGTCTATGGTCTTCTTTTCACCCAGACTGGTAGGCGACTCATTCTACTGGCTCAGTgttgtacaatgttttatttggtattaAACTATTGTTTTGGATTTGGGGGATATCCAGCTGGGACTGACTTATTTTCCCCTCTATAAGGATGCGATATTGTGGCTGTGTTCACTAACCATCAGGTATATCACTTCAGGGAGTCTTACCTTAATAGACACCAACAATAGAGATGTTTGGGTTGGTTTCTAAATAGCATACCTCCGATAAAATAAGACGACAATATAAATCAAGACCTGATTTACTCTCCACTTGCATTCCACACTTGAAAGAACAGGATGAGCCAAACTATTAATTGTTCATGAGGTCATAACTTCGTATTCCTACACACTGCTGTCCGATGTGCTGTGGGAGCCCTTGTGTCGTTGCTTTTCATGCAGATTGTGTCTAAAAAGAAGCCGCAGCCGCCCACCACCCACATCCCAAATAAAACTAGATAGAAACATAACCTCTATATTAATTTCCTGCCAATACCATTTCATTTCCCCTTACGACATGAGTCAATAAGTGTTGTGTGACACAGCCAAGTACCCCTGGCCATCTTTAACCCCATGCATTTTCCCCACACCTGTGGATGATGGATTTGGGTTTACAATGCTGTCTTCACTTGGTTTCTGCAACACCTTTCCTTCAGGGTGTGGATGTGCTGATGTTTTCAAACAAGCCTCTGCACAATATAGTGAGATCTGACACAGTTCGACACACACACCGGCCAGTGCATCAAAAGCAATCATCAGACACCAGTCATTTAGCTGTGTTTCTTTGGTTCATTAACACCGAGTTATTGTGGATTCTCAACAGTACTGCAATATCTCGGGTACCACTTTAGGAGTAAGGATCTGTAATCAATACATACAGAATATATCAAATGAATGTAAGACAAAGTAACCAATAAtgatcaattaaaacacaatagagcaatacaatattaacatttatctAATGAAGTAGAACATATGTAAAACTTATTTTTGACAAGATGCTTTCAGCTCGTgatgtgctatatatatatatactgtatatatatatattttaatacactaTTGTCCTTTGTAAATAGGTGTCAGTGTGTTTTAGATGCCATTTGAGGGAATGTTAGCTCATGTGTCATCCGTGTGTTTCCTAGAACAGTTAgagatatatttgaataaaagtatatatatacgAGTcgagtctttttttcttccactgaCTGCATCCTTCAGAGAACATAGAGGCTGGTCTCCCCCAAAGGATGTAGTGTTCTTGGTTTTAATTTCCTTGTACAACAACGAGCCATTTCATCTATCCAGTCTGAGTACGAAAATAACAATCTGATGCTAAGGTTCCTGGGATAAATGTTAATTAGTCgaattgtattttatgaaaatattaaagaaagaaaaaaaaaaagtagctcAGTTAAGTCTTTTATCGGTTTTCTTAAAGATGCACTTTAAACGGGCTTTATAGAGTCAGAACCGTAACtttatttctcttctctttgtATTCAGTgctcatatataatatatattaaacacaggTTTAGTTTCTGCCTAGGCGTCAGCATACTGCCGGCACAgacttttgtattgtatttgcgTTCTGTGTGTTCCAGGTATGTAAACTAAAAGTGTGTATGTGCCTGCTGTTTCTATTTTGCAGAGggtcatgtcttttttttttcctttctttctttttttctggagTGATTGTCATGTTGAACAACACagtgtattatattaataccAATGCACAATGATTTTCTTTggtaatatttataaaactttatAGACAAACTTAAGTGAAACATCTGAAAATTATCATGGAGAGGACGGTCAGTGGGATTTTGTGATAGAAGGAGGtctttttgtgtctgtatgcCAGACGCAATCATCAACTAGtagcacatttttgttttattttattatctgtttgtctgtatacagtatatactttTATGGAAGCTCTATCATACTAGTATTATTGGAAGAACAAAGGGATTGATGGTTGGGTATCTAACACTGCTATTAATGTTTACATCTGTTACATTCaaaggtttaaataaaacaaatgaatggacTAGTggattttattacagttaaaaaaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014171 True 5754 mRNA 0.50 16 3339352 3370944

Neighbor

gene id symbol gene type direction distance location
AMCG00014165 NA coding upstream 117431 3220203 ~ 3221921 (+)
AMCG00014166 NA coding upstream 163297 3171834 ~ 3176055 (+)
AMCG00014164 NA coding upstream 173135 3149895 ~ 3166217 (+)
AMCG00014162 nhs,LOC103378685 coding upstream 294607 3044338 ~ 3044745 (+)
AMCG00014163 NA coding upstream 308649 2996445 ~ 3030703 (+)
AMCG00014170 NA coding downstream 6748 3377692 ~ 3378273 (+)
AMCG00014174 LOC108425737 coding downstream 20663 3391607 ~ 3397123 (+)
AMCG00014175 NA coding downstream 27347 3398291 ~ 3409107 (+)
AMCG00014176 NA coding downstream 63213 3434157 ~ 3452490 (+)
AMCG00014173 rbbp7,LOC105893332,LOC108438657 coding downstream 91124 3462068 ~ 3471988 (+)
G68153 NA non-coding upstream 111226 3226859 ~ 3228126 (+)
G68151 NA non-coding upstream 112853 3224574 ~ 3226499 (+)
G68046 NA non-coding upstream 362842 2976214 ~ 2976510 (+)
G67994 NA non-coding upstream 537308 2782339 ~ 2802044 (+)
G67997 NA non-coding upstream 541543 2792742 ~ 2797809 (+)
G68166 NA non-coding downstream 3893 3374837 ~ 3375148 (+)
G68167 NA non-coding downstream 4641 3375585 ~ 3375789 (+)
G68189 NA non-coding downstream 40034 3410978 ~ 3483649 (+)
G68292 NA non-coding downstream 583422 3954366 ~ 3955265 (+)
G68317 NA non-coding downstream 712819 4083763 ~ 4083964 (+)
AMCG00014146 NA other upstream 629023 2706840 ~ 2710329 (+)
G67896 NA other upstream 1209207 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 1436665 1900220 ~ 1902687 (+)
G67801 NA other upstream 1458311 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 1501227 1835432 ~ 1838125 (+)
AMCG00014196 NA other downstream 756532 4127476 ~ 4131718 (+)
G68475 NA other downstream 1278256 4649200 ~ 4651964 (+)
G68830 NA other downstream 3975251 7346195 ~ 7349467 (+)
G68848 NA other downstream 4042696 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 4093559 7464503 ~ 7482560 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003535 cdkl5 coding NC_007122.7 CM002895.2 30161168 ~ 30232133 (+)
grasscarp (Ctenopharyngodon idella) CI01000306_05805669_05822854 CDKL5 coding CI01000306 null 5805669 ~ 5823408 (+)