AMCG00014302 (LOC107582727)


Basic Information

Item Value
gene id AMCG00014302
gene name LOC107582727
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8259727 ~ 8260980 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014302
ATGAAGAGACGGATGCAGAAGAGATACTTGATTTTAATCATAGGCTACTCCGTGCTGCTCCTGTTCATTCCCTACATGCTGGATTACAAGACCAAAACGGGTCAGGTCAAATATGGACCTCAGCAGCAGAGGTGCCCTGATCTGGAGAGCTCTATGGAATTGTGGAGCACTGTGGACAAGGCGAGCAATGAGACTGAAGTCGTGGAGGAGATGGGCACTAGGAACCGCACCAAAACGCACATTTATTTGCACGCAACGTGGAGGACTGGCTCGTCGTTTCTGGGGGAGTTATTCAACCAGCACCCTGATGTGTTTTACCTGTACGAGCCCATGTGGACTATGTGGCAGGCTCTGTACCCGGGAGATGCGGGCAGCCTGCAGGGAGCCGTGCGGGACATGATGAACTCCCTGTTCCGCTGCGACTTCTCCGTGCTGAAACTGTACGCCGGCACTAAAAACATCAGCACCTCGTTCATCTTCGGCTGGAAGACCAACAAGGTTATCTGCTCTGAACCGTTATGCCCAGCCTATAAGAGGGACCAGATCGGGCTCATCAGGGGAGACGTCTGTGAGAAGTGCCCTGCCAGGGACATCAGGGATTTGGAGAGGGAGTGCAAGAAGTACCCGGTGGTTGTCATCAAAGACGTTCGGGTCCTAGACCTGGGCATCCTGGTCCCCTTGATCCGAGACCCCGGGCTGAACCTGCAAATCATCCAACTGTTCAGGGACCCCCGAGCGGTGCACAACTCCAGGTTGAAGTCCAAACAGGCGCTGGTCAAGGAGAGCATCCAAGTGCTGAGGAGCAAGAAACAGACGGACAAATTCAAGCGCCTCCTGGTGCCCAGCAGGTCCAACCGGGCGGAGAACTATGTGTCCAGCGCCATGGAGCTCATCTGCGACAACTGGCTCGGTGACATGCTGATCATCAGAAACGCGCCCCAGTGGGTGAAGAGGAATTACATCCAGCTGCGCTACGAAGACCTCGTCATGCGTCCCGTCCAGGAGCTCCAGAGGATGTTCCGCTTCTCCAACCTCGGCTCCTTTGCAGCCATGGACAAGTTTGTGTTGAACATGACCCACGGCGAGGGCTACTCCTCAGACAAGCCGTTTTTGATATCTTCCAGGAATGCCAAGGAGGCCATCCACGCTTGGAGGGAGAGGCTGAGTGTGGAGCAGATCAGCCAGGTGGAAACGTACTGCAGCGAGGTCATGCGCCGGCTGGGCTACCAGAAGACCAATGTGGATAAAACGTAG

Function

NR:

description
PREDICTED: carbohydrate sulfotransferase 7-like, partial

GO: NA

KEGG:

id description
K04743 CHST7; chondroitin 6-sulfotransferase 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014302 True 1254 mRNA 0.55 1 8259727 8260980

Neighbor

gene id symbol gene type direction distance location
AMCG00014301 rp2,LOC107753404,LOC107711097,LOC107685300 coding downstream 62102 8189023 ~ 8197625 (-)
AMCG00014300 LOC107585190 coding downstream 73487 8166242 ~ 8186240 (-)
AMCG00014295 NA coding downstream 104324 8148387 ~ 8155403 (-)
AMCG00014296 NA coding downstream 112719 8142189 ~ 8147008 (-)
AMCG00014291 LOC107586940 coding downstream 199709 8020985 ~ 8060018 (-)
AMCG00014303 NA coding upstream 43551 8304531 ~ 8305181 (-)
AMCG00014305 nipa2 coding upstream 61454 8322434 ~ 8326420 (-)
AMCG00014304 NA coding upstream 69076 8330056 ~ 8334452 (-)
AMCG00014312 NA coding upstream 275957 8536937 ~ 8539049 (-)
AMCG00014310 gabrg3,LOC107711006 coding upstream 340182 8601162 ~ 8615001 (-)
G69086 NA non-coding downstream 9166 8226494 ~ 8250561 (-)
G68981 NA non-coding downstream 385369 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 633352 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 794065 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 799838 7455978 ~ 7459889 (-)
G69233 NA non-coding upstream 629576 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 737446 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 1088808 9349788 ~ 9355238 (-)
G69372 NA non-coding upstream 1328844 9589824 ~ 9590081 (-)
G69373 NA non-coding upstream 1330196 9591176 ~ 9591381 (-)
AMCG00014298 NA other downstream 101137 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 120601 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 836436 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 847837 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 872743 7378088 ~ 7386984 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 122305 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1044259 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 1740154 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 1797117 10058097 ~ 10061230 (-)
G69537 NA other upstream 2535736 10796716 ~ 10798147 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033002 chst7 coding NC_007117.7 CM002890.2 37603968 ~ 37622576 (-)