AMCG00014362


Basic Information

Item Value
gene id AMCG00014362
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11061595 ~ 11086602 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014362
ATGTCCACGCAGGGTCAGCCGGGCCCTCTCGGCCCTAAGGGATATGATGGACCCCAAGGGTTCAGTGGCCCTCCTGGTTTACCTGGCCCAAAAGGAGAGAAGGGGGATCGAGGCAGGTCTGGAATCACTGGACCCAAAGGATCTGTAGGTCACCCAGGCCAGGCAGGATCCCGGGGGAAGCCTGGAGCAGATGGCTGCAATGGTACGAGGGGAGACAATGGATTGTCCGGTCTGCCAGGGTCAACGGGCTTGCAAGGCCTAGATGTGCTCCAGGTCCGGAAGGAAGGAAGGGTGACCAAGGAGACAGGGGTGACCAGGGTTCAAAAGGTGTCCCGGGTCCTCCAGGACTACATGCATCCGATACAGGGCCTGCTGGGGCCAAAGGTTTCAAAGGTGAACCTGGACATCCTGCCCTCCTGCCTGGACCTCCAGGTTGGAATGGGGTTCCTGGCCCACCGGGTCTTCCTGGACCCAGAGGAACATAGAGGCAGGCCTGGACTTAATGGCTTTATAGGACTGCCTGGGCTGCAGGGCCCGCCGgGTGAAGGACCAAAAGGCCTCCCTGGAGATAAAGGGTTTCAGGGCCCATATGGTGCCAAAGGTGCGATGGGTGAGATAGGTGAACCTGGACTCGTCTTGGGCTCTGAAAAAGGACGACGAGGGCCTCTTGGTGATGCTGGATTGAAAGGGGAACGTGGCCGCCCAGGCCCCCCAGGGATCCCAGGGCAGCCAGGACAGCCAGGCCACAGTGGTGAGAGGGGGCTTAAGGGCCATCATGGAGAGGTCTTGGGAGCAGCAGTTGGGGCACCTGGAGACAAAGGTCCCCCTGGATTAATAGGACCAAAAGGCCTAAGTGGAGACCCAGGCCTGCCAGGATATTCAGGCCTTTCTGGCAATAGAGGTGATCAGGGAGACCAAGGCCCACCAGGCCCCGCTGGAATGAAAGGTTCACCTGGATTCACTGGCGACCCTGGGTTTAAGGGTCATCAAGGCCAGCCTGGAGATCCTGGCCATCCTGGTTCAAGTGGTTATCCGGGTATTCCTGGACTCAGAGGTGCCAAGGGTGCTGAGGGCATGGCTGGGTTCAGTGGCATGCCTGGTCTCAAAGGTGTGAGGGGGTTTGATGGGGTGAAGGGGGAGACTGGATCTGCTGGGAATGTGGGACTGAAAGGGCACCGAGGCGTTTCTGGCGCAAAGGGTGATCGTGGACCAGCTGGTCCACCAGGCAGCAAACCATACCTCCCAGTGGTActaaaagacaaaatgaaaggaGTGAAAGGCATCAAGGGCCAGTTGGGAGAAGACGGATTTGTAGGTCAAAGAGGCCCCAAAGGAATGCCAGGAGTGCCAGGAGGGCACGGGTTTAGTGGCTTGCCAGGAGAGCCCAGTGATGTGAAGGGGATCAAGGGAGTCCCTGGACCTGAAGGGCTGCCAGGTATCAAAGGAATGCCGGGCCCCACTGGGCCACCTGGCATCAGTGGCTTTATAGGAATGCCTGGGATCAGGGTGACCTTGGCCCTAGGATTGATTTACCTGGCTCAACGGGTGACAGAGGTGAATTGGGACTACCAGGATTACCAGGGTTTCACAGGCCAGCCAGGAGATCCTGGCAGTCCCGGCTTCCATGGCATTGATGGAGTAAAAGGCATTAAAGGGGTGCATGGGATTGCAGGATTACAGGgGTTTATTGGAAGTCCAGGTTTTCCAGGAAATCAGGGTGAGAAGGGGTGGCCTGGAAACCCCGGAGagccaggagagagaggcaggcctGGCGTACCTGGCGAAGCAGGTTATCGTGGTTCTCAAGGTATTTTTGGACTAGATGGCCTGAAAGGACAAAAAGGCATAACAGGATTTCCAGGTTCTGATAGCTGGGGACCCCAAGGGAACCCTGGTCTGAAAGGGGTGAAAGGTGAACCAGGAATCCCCAGCACACTGAGTGGGTTCCCAGGTGAACCAGGCCAGATTGGACGTCCTGGAGTACCAGGTCTAACAGGTCCACCTGGGTTTTCTGACATAGTGGGGTTAGCAGGTGACCCCGGCTTCCCAGGACTGAAAGGACTGCGAGGTTTCCCTGGAGTCCAAGGCACTCCTGGAAGGCCCTCGCCTTATGGTGAAAAGGGGGAGCCAGGAGAATCAGGGTCCCCAGGACAAGATGGCATCAAGGGTGAGAAAGGAGAACTAGGCTCTCCTGGTCTGCCTGGTTTCTATGGAATCTCTGGGCTTAAAGGTCAAAAAGGAGAGCAAGGGCTTATGGGAGTACCTGGCAGAGGTGGCTTTCAGGGAGACAGAGGTCCAGTTGGACCAAAGGGTGACACTGGCCCAACAGGCTTATCTGGCCCCCCTGGTTCCAGAGGCCCAGCCCCTGTCCCTCCAGTGTTAGTGAAAGAGCGAGGCCCTCCTGGCCCAATGGGAATTCAGGGGCCTAAGGGAGTCCAAGGGGAAACCGGGCCACATGGCCCACCTGGAGATCCAGGTTTTTATGGATCCCAAGGGCCAAAGGGTTTCCCAGGAGTCAGTGGCAGATCAGGAAATCCAGGTTATCATGGGGAGTCAGGACAAATAGGCCACCCAGGCCTTCAAGGCCTTGAAGGCACAAGAGGCCGCCCTGGTGACCCTGGGTTGCCTGGCATGCCCGGTCGCACTGTTAGCGTTGGGTACCTGCTGGTGAAGCACAGCCAGTCAGAGCAGGTACCAATGTGTCCAGTGGGCATGAATCAACTCTGGGATGGATACAGTCTGCTTTACTTTGAGGGTCAGGAAAAAGCTCACAATCAGGATCTAGgaTTGGCAGGATCATGTCTTCCACGATTCAGCACTATGCCGTTCCTGTACTGCAACCCTGGAGACATCTGTTACTATGCAAGCAGAAATGATAAAACCTACTGGTTGTCTACGACGGCCCCTCTACCAATGATGCCTGTAGAGGAGGAGGAAATTAAGCCATATATAAGCCGCTGTTCAGTCTGCGAGGCTCCGTCACTGGCTATCGCTGTCCATAGCCAAGATATCACTATCCCACAATGCCCTGCAGGCTGGCGTAGTCTCTGGATTGGTTACTCCTTCCTCATGCACACTGCAGCTGGAGACGAAGGTGGTGGGCAGTCCTTGGTTTCACCTGGAAGCTGTCTTGAGGACTTCCGCACTACTCCTTTCATCGAATGCAACGGAGCCAAAGGATCTTGCCACTACTTTGCCAATGAACACAGTTTCTGGCTGACATCGATAGAACATTCCTTCCAAAGCTCTCCGTCCGCAGAGACGCTGAAAGCAGGACAGCTGCTGTCCCGCATCAGCCGGTGCCAGGTGTGCATGAAGAACTTATAA

Function

GO: NA

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014362 True 3327 mRNA 0.56 24 11061595 11086602

Neighbor

gene id symbol gene type direction distance location
AMCG00014355 NA coding upstream 260285 10766636 ~ 10801310 (+)
AMCG00014356 NA coding upstream 307448 10721084 ~ 10754147 (+)
AMCG00014357 NA coding upstream 389857 10665393 ~ 10671738 (+)
AMCG00014350 NA coding upstream 681174 10352845 ~ 10380421 (+)
AMCG00014351 LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852 coding upstream 743593 10308422 ~ 10318002 (+)
AMCG00014363 LOC106582132 coding downstream 10965 11097567 ~ 11105850 (+)
AMCG00014361 NA coding downstream 38797 11125399 ~ 11129360 (+)
AMCG00014369 arhgef7a,LOC107668898,LOC107712280,LOC107569023 coding downstream 91359 11177961 ~ 11220774 (+)
AMCG00014370 sox1a,LOC105893305,LOC106586732,LOC101064967,LOC107692134,LOC107718482 coding downstream 305787 11392389 ~ 11393405 (+)
AMCG00014371 tubgcp3 coding downstream 453830 11540432 ~ 11561870 (+)
G69556 NA non-coding upstream 99666 10959326 ~ 10961929 (+)
G69540 NA non-coding upstream 223365 10837204 ~ 10838230 (+)
G69499 NA non-coding upstream 568199 10493147 ~ 10493396 (+)
G69457 NA non-coding upstream 837560 10223671 ~ 10224035 (+)
G69431 NA non-coding upstream 1005862 10055377 ~ 10055733 (+)
G69610 NA non-coding downstream 134468 11221070 ~ 11221274 (+)
G69681 NA non-coding downstream 554481 11641083 ~ 11641452 (+)
G69722 NA non-coding downstream 632716 11719318 ~ 11722767 (+)
G69739 NA non-coding downstream 697263 11783865 ~ 11784083 (+)
G69778 NA non-coding downstream 1513502 12600104 ~ 12600313 (+)
AMCG00014345 NA other upstream 909682 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 1052947 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 3579035 7464503 ~ 7482560 (+)
G68848 NA other upstream 3645001 7413640 ~ 7416594 (+)
G68830 NA other upstream 3712128 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 2159707 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 2568636 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 3102962 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 3215845 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 4135312 15221914 ~ 15242333 (+)

Expression


Co-expression Network