AMCG00014410


Basic Information

Item Value
gene id AMCG00014410
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13251935 ~ 13260989 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014410
CTCAATCCCATCCGCCCCTGCAAACGTCACATCCGCTTGTGCAGCAGCCATTTTGTCTGTTCGTGCAAGTCCGTCCCTCACGGTCAAAAACTGCAGTTCCCCCTTTAAAAACAcgattattttcatttttgtattgcatgCTTCTCTTTCTATGGAGATCGAAAAGGGGTGAAAAACTAAACCAGATCATTCATACCAGGAATAGATTGTTCCCTTGGCGCTTACAGTGTGCTTTTGGTTGTCGAGCCGTTTGTTGCGGGTGGTGGGGGCATGTCGAGCGAAGAAAGCTACCTGGCGATACAGCGGTACCTGACCGATGAACGGGAGCCCTACGCCCCGGGGACGGAGGGCAATGTCAAGCGAAAGATCCGGAAAGCGGCCACTTGCTACGTGGTCCGAGACGGGACTCTGTATTACCAGCGGCGGCACAAAGGCCAGGAGAAGTTCACCGAGCTGGAGGTGGTGCTGCAGGCCGGGCGGCGGAAGGAACTCATCGATGAAGCGCACATCACCGCCGGAGGAGAGCACCTCAACCGGCACCAGACCTGGCACACCATCTCTCAGAAGTACTGGTGGAGGGGCATATTAAAGCAGGTGAAGGATTACATCAAGGCCTGCAGTCAGTGCCAGGAGAAGCAGGAGCGCTCACGAGGGTGGACTGAAGATGTTGCTGTGGAGGGGCTGGGGAAAGGAGGGCGCAGAGCTGCCCAGGAAAGtgacgaggaggaggaagagtcCAGTACTTTTGAGGCCCAGCCCAGCAGCGCCCCCACCCACAGGACCCCCAGGCCCTGGAAAAATGTTGCCAAGCATGAACTGGTCTTTGTGGACACCAAGGGCATTGTGGACCAGCACTCTCCCAAACATGGTCAGGCCATGCTGGACAAGCTCAACCAGCAGCGCCTCAACAACCAGTTCTGTGACATCACCCTGCTGATTGAGGGGGAGGAGTACCGGGCTCACAAGTCCGTGCTGGCAGCCTGCAGTGCCTACTTCAGTGAGCTCTTCATTGAGAAAGGGGCTATCTCGAGTCACGAGGCTGTGGTGGACCTCTCGGGCTTCAGCAAATCCAGTTTTCTTCCCCTGCTGGAGTTTGCATACACCTCCAGCTTGACCTTCAACTTCTGCAGCATGGCAGAGATTGCCACGTTGGCCCGCCACCTTCTCATGGTGGAAGTGCTGGAGATCTGTGAGTTTGTGCACAAACAGGTGGAGGAGAAGAAACTGATGGTTTATCAGAAAGGGGACGTGCACACTGTGGTGTCCTCCGAGGCCTTGCCCAGCGAGCTGCAGGGTGCTGAGGCAGCCCCTGAGCCCCCCAGAGAGGTGGAAAGGGTAGACGAGGTGAGCAGGGAAGAAGGGGCTTTCGTGGTCCCTGTCCAGAATGATTCCCATTCAGAGATTACACAGAGCGAGGAAGCGGCGGAAATGGAGCAGCAGCCTGTGGTTACGACCACCTGGATAGCTGCGGAAACCCAGGTTGTCGACGTCCCAGCAGCAGAGGTGGATTTGGCAGTGAAAGTCCAAGAGCCCGATGCCTTTGTGATCAATGTGGACCCTGGCAAAGGGGCCTCCACAGAAGTGGTCCACCTTGCAGCGGCCGCACCTCCTGTTGTGGAGGAAGAGAAAGCAGGAGTGGAGAAAGAGGGAGCTATCGCTGTCGTTGCCCAGCCACAGACCCCGGAACCTGCCCCTCTGGCTCCGAAACGGAAGCGTGGGAGGCCAGCCAAggtgaagcagcagcagcagcagcagcagcaggaggtgGTGCTGGTGGAAGAGGCCGAAGACACTTCAGAGGTCATCGAGGTACTAGAGTATGGAGCGGCCCCCGAGGAAGCGGAGAGCCCCGCCGACGATTCCTACAAGAGCCGACTGCGCCCGCCCTCGCTGGGTGAGGGGGGGTACATCCGCCTGCACATGGGCTTGGAGCGGAAGCTGCAAGGCAGGAAGGGGAACCCACGATCAGCTGTCCAGAAGGCAAGTGTGGCCCAGCGGCTCGTGAAGCGAGGCAGACTGATGCAGCCTGTGAAGAAGCCAGCGGGGGAGCAGGACACGGTGGGGGACAGCGAACACGTGTGCTCCGAGTGTGGGATGGTCTTCCAGCGCCGATACGCCCTCATCATGCACACGCTCAAACACGAGAAAACCCGCGGCTACAAATGCACTCTCTGCAATAAGGAGTTCCAGTATGCGGCCTCCCTGCGTGCTCACCTGGCCCGACACAAGCGCAAGACCCACAGGACCGCGGCCACCAGGGAGCCGGTGGAGGAGGATGGCGACGCCAAGGGAAAGGGCCGGACCAAGAGGGAGTTTGTGTGTGACATCTGTGGGAAGACCCTGCCTAAGCTGTACTCGCTCCGAATACACATGCTCAACCACACCGGAGTTCGCCCCCACACGTGCAAGGTGTGTGGGAAGTCGTTTGCCCACAAGCACAGTTTGAAGATGCACAGGTCCCTGCATGACGCCCTGAAGCAATTCCAGTGTACGCTGTGCGACAAGTCCTTCGTCACCAAGCGCAGCATGCAGGAGCACATGAGCATCCACACGGGAGAGTCAAAGTACCTGTGTTCAGCGTGTGGAAAGTCATTCCACCGAGCTTCTGGACTCAGCAAGCACTTAAAGAGACACCAACCCAAGCCAGAGGTCCGGGCCTTCCCCTGCACACAGTGTGATAAAAGCTTCTACGAGTCCAGGGACCTCCAGCAGCACATGAACAAGCACTTGGGCCTGAAGCCGTTCCAGTGCCAGGTGTGTGGGAAGTGCTACAGCTGGAAGAAGGACTGGTACTCCCATGTGAAGTCCCACAGCGTCGCAGAGCCCTTCAAGTGTAATATCTGTGGGAAGGAGTTCTACGAGAAAGCCCTCTTCAGGAGGCACGTGAAGAAGGCCACGCATGGCAAGAAGGGCCGTGTGAAGCAGAACCTGGAGCGGGAGTGCGAGCACTGCGGCAGGAAGTTCACCCAGTTGCGGGAGTACCGCCGGCACATGAACAACCACCAGGGTGTGAAGCCATTCGAGTGCCTGACATGCGGGGTGGCATGGGCAGATGCCCGCTCCCTGAAGCGCCACGTGCGCACTCACACTGGGGAGCGTCCCTACGTGTGCCCGGTGTGCCAAGATGCCTACATCGACGCCCGCACCCTGCGGAAGCACATGACTAAGTTTCACAATGACTATATCCCTGGGAAGATCATGCTGGAGAAAGACACGCTCCAGTTTCACAACCAGGGCACGCAGGTGGAACACGCCATCAGCATCATCGCCCCGGACCTGCCACATGAGCTGCGGCCGCCCGAGGAGGAGCAGGTGGGCGAGGAGATCGAGACGGTGCTGGTCACGGAGGAGACCATCGAGGCGGTGCAGGCTGTGGCAGCCACTGAGGAGTGTGGCACCGTCTCCACGCTGTCTGACCAGAGCATTATGCAGGTGGTCAATTATGTCCTGTCCCACCAGCAGGGGGGCACCACTGGGGCCAAACTGTCAGAGGAGACTCCTGATGCCATCCAGACAGTCGAAGTAGAGGTGGCCCACATGGCAGAGGCAGAAGCAGAGTGACCTCGAGGCTGATTCTCCCTAGAATGAAGAGCCTCGGCGTGGATGGCTTCTCCCAGACAGAACTGACATGCTTACTTCTTCCATCGCACTTCGGCTCCagcagctgcagtgtgttcCTGACTTTGGGCCCAGTAGTGCTATAAGATCAGTGTCCATGTGTGGGGCAGTCTGGATCAGTGACTGGAATCTGCTTTTCCTGAGTGGACTCGGAAAGATGTACAGCACTGGCAAATGAACCTTAGAAGGAGTAGGCTGTCTGTAAATGTGGTGTAAAtagttgtgcttttttttttttggaacaaGCCTACAAGGAATGCCTTGGTATCTGAGGAACTGCAtaattttttccacttttttttttttggttgtgcGTGTGAAACCTTAGCTCTAAAACTGTGTATATAGCTGTCAACGCATAAGTGACATCATACATGTGCTCTGTAATCATGTTCTGCAGAATAATTATGCACATCGGGGTCTCACTCCATTCCTGGAGGTCTACTGTGTCTTCAGGTTTTCACTCCAACTGAAGCAGTCAATTACTTCTAGTTATTTTAACAATTAGActtaaacaatattgttttaaggtCTTTTGCAGTTgagtgtaaaacattttgattgtgtTCACTACCTGTAACATAATATGCAGCCTGTATAGAACCATTTAAATCTAGTTTAATTAGGGCCAATTAAATCACCGGGAAGTGTGCTGGAACAAAAGCTAGGACAACCCTTTGGCCCTCCGGGTATTGAGTTTGAGCCCCCCCCCCAATGTTCATCTTACGAGGACATGTATACGATTTCCTTTTTTGGTAAAGACTTCTCCGTTACAGAGCTGAGACTTTAGCTTTTCCGTAAAActtgaattttgttttgtttttataattttttaggACCTTGTGTGGCCAAAGACATGTCTAATGTTATGCAGAACATATTTGCCACAGGTAATAGGCAAATTTAGCATTGCtggaataaaaactaaatcctTGCAGTAGAAGCATTTAAATGGTGTGAAAATAATGGTCTTTATTCACCAGTAAGCCTCCCTTGGATGTTTTGAATGGAAAGGTTTGCTCATTTTGTCTTTAGGTAGCTTGCAAAAAAAGAACTCATTCCAATATatcagtgaaatgtattttatcagtgaaggcttatgtaaaattaatttgcaGATTGTTTGGTGCAGAATAATTAACCTTAAACTGTGAAAAGGGCTGCAGTTATTAAGGGGTGTTGACTCTACCATACTGGCTTCCAATAGCATGTTTGTATGTGGGGAAAATATATTcaagtttttctttctgcttgtAAAGTTTGTAGGTTGGTCTCCATGatgaattaaaaaaggaagaaaaagacaaTTGTGTATCATTAAGTGTTTTGGTCTCCAGACCATTGTGATAGAATTGAAATGGATGAGTGGTAGACAATGGATGGTCATATCAAACATGTATCATTAAAGGCACAGAGCAC

Function

GO: NA

KEGG:

id description
K10498 ZBTB11; zinc finger and BTB domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014410 True 5037 mRNA 0.53 11 13251935 13260989

Neighbor

gene id symbol gene type direction distance location
AMCG00014413 txnl4b coding downstream 9283 13241826 ~ 13242652 (-)
AMCG00014408 NA coding downstream 14407 13208745 ~ 13237528 (-)
AMCG00014411 impg2b,LOC108432621,LOC107704545 coding downstream 48128 13175211 ~ 13203807 (-)
AMCG00014398 NA coding downstream 269440 12907404 ~ 12982495 (-)
AMCG00014397 NA coding downstream 376399 12850007 ~ 12875536 (-)
AMCG00014409 rpl24 coding upstream 1390 13262379 ~ 13265549 (-)
AMCG00014437 me3,LOC108426042,LOC107748144,LOC107595810,LOC107756775,LOC107695468 coding upstream 116673 13377662 ~ 13408576 (-)
AMCG00014434 LOC106575972 coding upstream 182281 13443270 ~ 13473171 (-)
AMCG00014432 NA coding upstream 217359 13478348 ~ 13487613 (-)
AMCG00014438 NA coding upstream 237737 13498726 ~ 13527602 (-)
G69896 NA non-coding downstream 165590 13085363 ~ 13086345 (-)
G69849 NA non-coding downstream 281380 12970253 ~ 12970555 (-)
G69759 NA non-coding downstream 1371479 11879097 ~ 11880456 (-)
G69743 NA non-coding downstream 1480542 11769690 ~ 11771393 (-)
G69539 NA non-coding downstream 2430863 10815771 ~ 10821072 (-)
G69950 NA non-coding upstream 40935 13301924 ~ 13302379 (-)
G69973 NA non-coding upstream 43437 13304426 ~ 13375879 (-)
G70034 NA non-coding upstream 362126 13623115 ~ 13623381 (-)
G70063 NA non-coding upstream 433768 13694757 ~ 13696971 (-)
G70091 NA non-coding upstream 498237 13759226 ~ 13761420 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 118184 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 1584398 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 2114849 11125029 ~ 11137086 (-)
G69537 NA other downstream 2453788 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 3190705 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 3461084 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 4185879 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 4328278 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 4729662 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 5940814 19201803 ~ 19203567 (-)

Expression


Co-expression Network