AMCG00014425 (cul4a,LOC102780633)


Basic Information

Item Value
gene id AMCG00014425
gene name cul4a,LOC102780633
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13791149 ~ 13813879 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014425
ATTGGCTTGGAGGTGGGGAAAGAAGccattttgttggtttttctttCCTAAAGATGAAGCGGCTGAGATTGTTTATTGGGAGTTTATGTAGTTGGGCTGACTGATTCCTACAGAACGTTATATGATATAATGGATAACTTTTTAGCAACAGGAAAGCAGGTTGCCGAGGATTTACCTGCAAAAACCTGTAGATAGTTTTTgtctttccccctttttttccaCGCCTCGCTCAAGTGCAACTGTACTTATGACTTCACCGACAGAATTAGTTCATTGCTAGCTAAGCCTCCAGGAGATCCATGGCGAGAAACTAGTGTGATTGGAGTACGTGACAAAAGCACACTCATGCTACCAACCCCTGCAGGATTTTGACCTGGGACGACACATGGATAATTTTAAGCCACACAGCGACCAACCTAACACAATCGGAAGTGACTTCTTCTGAAAAAGAAATCGCACAACCCGGGGACTTTGTATCAAGtccagaggagaggaggggagaaaaCCCGTTTGTCATTTCTGGTCTTCCCCACATTATACGAGCATGGCAGAAGATAATCGGCAGAGCAAGAAAGCCAACTTCTCCGCGTTAGCAGAGCATACCAACGGACTCACAAAAACGTCCACACTTGCCTCCAAACCAGGGGCATCTAAGAAATTAGTTATTAAAAACTTCAAAGACAGACCAAAGCTCTTAGACAGTTACACTCAGGAAACATGGAAAAAGCTTCAGGAAGCTGTAGGAGCCATACAGAAAAGCACTTCAATTAAGTACAACCTTGAAGAACTCTATCAGGCGGTGGAGAACCTTTGCTCTTATAAAGTGTCTCCTACACTATACAAGCAGCTCAGGCAGGTGTGTGAAGATCATGTGAAAGCTCAGATCCATCAGTTCAGAGAATATCCTTTTCCCTGCCTCGAGAGACCACTGAAGTACaatgttttcttcaATTCTTTGGACAATGTTTCTTTTCTAAAAAGGATGAATAAATGTTGGCAGGATCACTGCAGGCAAatgatcATGATAAGgagcattttcttatttttggaTCGCACGTATGTTCTACAGAACTCCATGTTGCCGTCCATTTGGGACACGGGGCTGGAGCTGTTCAGGACCCACATCATCACTGATAAGATGGTCCAGAGCAGGACGGTGGACGGGATCTTGGAGCTGGTGGAACGGGAACGCAGTGGCGAGGCTGTGGACAGGAGTCTTCTGCGCAGCCTGCTGAGTATGCTCTCGGACCTGCAGGTGTACAAGGAGTCTTTTGAGCAGAAGTTTTTGAAGGAGACAAATCGTTTGTATGCAGCAGAGGGCCAGAGATTaatgcaggagagagagGTACCAGAGTATCTTCACCACGTCAAGAGGCgcctggaggaggagaatgACAGAGTGATCACATACCTTGACCACAGCACACAGAAACAGCTAATTTTTACTGTGGAGAAGCAGCTTCTTGGTGAACACTTGACAGCCATCCTACAAAAAGGTCTGGATAGCCTGCTTGATGGGAACAGGGTAGCAGAGCTCACTCTGCTGTATCAGCTCTTCAGCAAGGTGAAGGGAGGGCTGCAGGTCCTGCTACAGCACTGGAGAGATTACATCAAGAACTTTGGCATTACCATCGTGGCAACCCCGGAGAAGGACAAGGACATGGTGCAAGACCTGCTGGACTTCAAAGACAAGATCCAAAACATCACTGAGTCCTGCTTCCAGAAGAATGAGACCTTTGTCAACTCCATGAAGGAGTCCTTCGAGACCTTCATCAACAAGAGGCCCAACAAGCCTGCTGAGCTTATAGCTAAGTATGTTGATTCAAAACTGCGTGCTGGAAATAAAGAAGCAACAGATGAGGAACTGGAGAGAATACTGGACAAAATCATGATCATCTTCCGGTTCATTCATGgcAAAGATGTGTTTGAAGCATTTTACAAGAAAGATCTAGCCAAGAGGCTGCTGGTTGGGAAGAGTGCTTCAGTAGATGCTGAGAAATCCATGCTGTCCAAACTCAAACATGAATGTGGAGCGGCCTTTACCAGCAAGCTGGAGGGCATGTTCAAAGACATGGAGCTCTCCAAAGATGTCATGATTCAGTTCAAACAGtatatTCAAAATCAGAGTGACCCTGGCAACATAGAGCTCACTGTTAACATCCTTACGATGGGCTACTGGCCTACGTACATACCCATGGAGGTCCATCTGCCCACGGAGATGGTGAAACTGCAGGAAGTATTCAAGATGTTCTACCTGGGGAAGCACAGCGGCCGGAAACTGCAGTGGCAGCCCACACTGGGCCACGCCGTCCTCAAATCCCAGTTTAAGGAGGGTAAAAAGGAGCTGCAGGTGTCCCTCTTCCAGACTCTGGTGCTGCTCATGTTCAACGAAGGGGATGAGTTCACCCTGGAGGACATCAAAACTGCCACTGGAATAGAGGACAGTGAGCTGAGGAGGACGCTGCAGTCTCTGGCCTGTGGAAAAGCCAGAGTGCTCAACAAAACCCCCAAGGGCAAGGACGTGGAGGACGGAGACAAGTTCCTCTTCAATAACGAATTCAAGCATAAACTGTTCAGGATCAAGATCAACCAGATCCAGATGAAGGAGACCgtgagcaccACAGAGCGCGTGTTCCAGGACAGGCAGTACCAGATCGACGCCGCCATTGTCCGCATCATGAAGATGAGGAAGACCTTGAGCCATAACCTGCTGGTGTCAGAGCTCTACAACCAGCTCAAGTTCCCAGTTAAGCCTGGAGACCTGAAGAAGAGAATTGAATCCCTCATTGACCGAGACTACATGGAGAGGGACAAGGACAATCCCAACCAGTACCATTATGTGGCATAAATTGAGTGTGAGCGACAATCCTGACCTGTACTGCACAGCACTGACCAGCAGAACTCCACGGGCCCTGTCCAGCCGGCCGACAGCACGCCTCTCACGCCAGGATGACGTCATTCACGCAGCTGCATGCGCTGTCGAGTTCAGGAAATAGGCATCGGGCGTGTTTGAATCTCCAGTGGTGGTCTGAATTCATAGcattactattttgtttttcttgattctCATTCTCTGTTCTACTgtaggattttttgttttgtttttcagtttgcaaCTGCTGTCTACCTAACAGAGCCAATGAGAAGCAGGAAAAGTATCTGATATAGGCCTGACCGTTTAGCTTCTCCAGACCACGAGTGAAGGCAGTCCGCAGGATGACGAGGGCAATTTCTGTTTGGCATTGCACTGGTTACTGGTTTGCTAGGCTACTTCCTAAAAATCATAAATGAGGTGAACTTTTATCAGTGGGGTTAAGACATTTGCCTGcacctttttatgtttttttttttctgcttgtaCCACCTTTGTTAGGATGATTCCCCAGTTTGCATACTCTGAACTTAGTAGCTGATGGTCTGTGTTTGCAAGGAGTTACAATATAGAGAGAAAATAGAACAAGAAACTATTATAGGCCTAAAAAGTGCCAAGCAGACCAGGCTTCTCTCTCACAGATGTGTGTATCCAGAAGCACATCCTACACTGCGTTTGTCTTCTCTAGTACGTTTTAGCGATTGTTAAGCCAAATCTGTTCTGATTAATGCTAATAAagtgtcatttttatttgacttctCTGAGTAGTAGGTAATGCTGACACATTAtagtttggaaaataaataataacgaACAGGGAGATCTCTCAAGTGCAATTTTACTGGTTCACTTTTTAATCGCCCAGACTTGGGCTTGATAGATGCTATTAATGTCATTGCAAAAGGAAAGTCTGCCAGATGAAAATGAGTGGGTTGCTGAGCACCTAGGGTACACACTGTAAATAAGTTGTTTGGTATTCAACAAAGAAATGATTTCTGAGAATTGTAAGAGTTTTGTTATGGTGATGTCACAAAATGAGAATATGTGGATGAATGGCGTTAATAAAACTGCTGTATTTGGTAAGAGCTGTATAATAGCAtgtctaatttaattttttttaaagaatagtatttttttgtgtgacttgtatttaaatgtctacTCTGCATTGGCATACCTAATTTTTTGATTctcttaatttcagtttttggtgCTTTCTTTTCCGAACATTAACGCTGTGCACACATGCATTGCAGCACACTTTTGCCTTTGTATTTGGCATTTCTCCTAAAGCTTCGTGATCGAGATCCCCATAgattgtgtggttttattttttttatttaacattttttgagGTTTATTTGAAACTAAATCCTCCTTTCCTTCCCAGGTTCATCTTCACTTTtttagttaatatattttagatatattAACTAACTGGAATGTGCATATATTGTTCCAGTCTTCCTATTATATCCTTGAGCTGCACAGTGTTTgtgattaattttaatattcatatttaattacacaCTGTTAAATTTAGGTCAGGACGTAAACaaccttgttttttctttgtagatcaagttgaaaatatacatgttccATGTGTTGATAATTGACAACTCTGATTCGCAACATTTTTTTCAACTGACAATCAAGTTTCAGGAGGTTACAGCTGCCATATTTTCAtcattgttttcacatttgtcCCTGTACAAGAtagtattagagtattttttaatcattgaatttattttaacagtattaTGAAGGACTATAGGAAGCttagaatgcattttaatttgtcatgtttttttctttatcattatGGGATATGGAatgtaaacttttaaaataagtgtgtgtgtgactgtgtgtgtatatacagctctggaaaaaattgagaccactccaagttcagaaatcaattttaagtggtctcttaattttttccagagctgaatatatgtatatatacaaatacaaattgtgtgtgtgtgtataatgtgcaCGTAtctatttgcaaatgtattctggAGAATTGGCTGCAGAAGTAAAAGGCAAACTGAAGAAATGACAGCTGATTCCATGCTTCTCTGTAAAGCACAGCcacattcatacatatatgaatatttttaaatattattgtaaatagtGGCAGTTGCTAACAAAAAAATTGCATACATGAGGCATATTACtaagtattattttttgccAACCTTGAGTATAAGACCAGGTTGGTATCAAATGGGTCATTTGTACTGAACACAAGAGCCAGACTGAGACAGTCCTGTGCTAAAACTAATTTACAGCAAAGTGAAGTCCTGAAGAATCCCTAACTAGAAAGGTTTTGTCTTTAGTATCAAGTTGATAATTGTCTTACAACTTCTCGTACCTTTTGGAgttttatctgtgtgttttcGTAAGCTTTTAACATACTTCTGTtaaatgttctgtttgtttgtcagaGAGATTTAATGAGTAAGCTAATGTCATGGTGCGGTCAACAAGGTCTGATGAATCGGTTTGAGAAAGCACTGTTAGCTTTTGGACTGTCATTGTTTTGTCCACACGTGTGTCCAATGAAAATACAAGTTTTGCAcctttaaaagtatttcatgAAACTACAATATACAATCCTCCTTATTCTAAGATTCATGAGAGCATTTCTTATTGATGTAAtgtagattaaaaacaaaatcagtccCTTTATTGTAACTAAGATAGTGTGTGTATTACTTAGCAATATCCTTTCTATGGAATTCCAAAACACACTGCCTGGTAAAGTGAAGTAATAACATTTTTCTCAAAGCTCAAAAGACTTTTATCTCCTGTTAGTGTGAATATTTCATATCTTTTGTTGAGATGTGACCTGGAATAGAAAGCAAATGCCATAATCATTCTGAACTCAATAAAGGATTGCAATTCACAAAGTTAGACTTAATCTGTGCCCAACAGATCTTTTGGCCTTAAGCACAACAGGCTCTTAATTAGGTTTTAAACATCTAAATTAGATTTTCGTGCTTGAGTTCAGATATAATTGCTTAGAACAACATATTAGAAAATGGAAAGCTGTCTTTGTGAGGCAGCTCAaaaggtatttgtttttcataaaggTTGTTATTTTTCAGGCCTTTTTTCTgaattacacattattgtgGAATTTTATGTGCTACTGCAGAAATTCTCCATAAGATATGTGGGTTAATAGGTGCACTCATCCCCCCCTGCTTGTTACTGTGACCAGTATTAAGATTTTGCCAGCTATGactgcaataaaacatttacacttttcataaaacaaaatacaatttctacagTCAAATAAACTTCATAATTACAAGCAGGAACACTCATACTGACATCATTTGTACTTAATGGTTGGTGGCTGCCCATGAGCCTCTTTACATTTGAAAGATGGACATTGCGTGGttaattaaccattttaattttaaatgtgtattcatatttataaaataatataatattaatattgccTTTCATCTGACAAGTATGTTacaatgtgtctgttttgcaaTTAATACTTATACAATCATGTATAGTTTATATCTCAATTCAGACTTATCAGGAACTGTTTGTCACCATGCAAACCAAGAGTGAAACAGTGCAACAAATGTTACTTCATTACATGTCACTTCAtaatatagatacacacacatctaggcattaattaaaaattgagAATGTAATTATTCTGATCAAAggcagtttgttgttttttatggttATATCACTTTGTAAGAAAGTCTGTGTTTATCCCCATGTCTGTAAagattgtgtttgtggtttaaatTAAGAGCAACTTACTGAAGAGATTCCTCCATGTTTGGAAGTTAGTAAAATTAAGTGGAGATATCTGTTGTTTGCACCTGTGGATTTAAACAGACACAGGTGCCCCGCACCCTTCCTCACAATCTGCATTCAAAATCCATTTCAGAAGTGATTAATTCTGCAGTATCTGCTTTGATGGAGTATGAATGTTTACAACAAGGCCAAGGCTAATCATATGTTTTGTTGTGgggttaatttgtttttttgttaacgATATTGTTAAAATGTCAGATAAATCTGGATTGTAACAGTCTACACAGACAgtcaaagtgtttgtttttttatttattttttaatttacaaatattgcCCAGTATATCGAGGAGAGGAGATACAACAGGGTGTGGACTGAGTTCAAAATTAAGAAACTCGATTATCCAAACTATGGCTCTGAAGTTGTCATATCCCCATCTGTGATTGTTACACAATGTCCAATGACTGGGCTGCTAACCCTGATCATCAGTCGAGAAAGCCCTCGTCACATGTTTATGAAAGGCTTATTTTTACTAGTTAAATACAACTGAATGTATTGTGCAAATGTAAATGGGTAAAAAGAACACTTTGAGAATAGTCATCACCACAGACCACAGAGCAAAAGAAGTCACTCCTTCACTCTTTGACTTCTGCTTTTTATTGTCTtcccacatttattttattactccCTTCTTGGTCAGGTGATTTCAGCTGAGACAGAACCGGAAACATTATTCTGCTCCTCAGTCTCCAGTGTCTTCTGGATTTCATTCCAACTGAATTCTCAATTTCTTAGCCGaactcttaattgaactaattgcTTGATATGATAGTTGTTTCAGACTGTTTTCACcttcaaataaattacttttatagGTGACTTTAGGGATACCTATGTAAGCATTGTTACTGCTTTAAATAAGTATTGATTACACTGGAATCATTTTTGTTCTATTTGCAATGACTGGATTTGGAGAACATAAAAGTGTCCTGCAATAACAGAGGGCTGGGGGGCATTATTACAACTTTCATCTTGAATCAATGTAATGAAAGGacatgaaagttttttttttttaagtcctgTAGTCCTAATcagatttgtataattattcacataactgatgtatgtttttatgcataATGGTGTGACCTTAACCCATTGGCATATGCTGG

Function

symbol description
cul4a Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic pectoral fin morphogenesis; heart development; and otic vesicle morphogenesis. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Is expressed in brain; heart; and pectoral fin. Orthologous to human CUL4A (cullin 4A).

NR:

description
PREDICTED: cullin-4A

GO: NA

KEGG:

id description
K10609 CUL4; cullin 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014425 True 7870 mRNA 0.39 20 13791149 13813879

Neighbor

gene id symbol gene type direction distance location
AMCG00014426 NA coding upstream 3073 13749673 ~ 13788076 (+)
AMCG00014424 NA coding upstream 43651 13744121 ~ 13747498 (+)
AMCG00014421 NA coding upstream 141075 13630667 ~ 13650074 (+)
AMCG00014422 NA coding upstream 176131 13590920 ~ 13615018 (+)
AMCG00014420 NA coding upstream 339930 13450098 ~ 13451219 (+)
AMCG00014427 NA coding downstream 6477 13820356 ~ 13827551 (+)
AMCG00014439 LOC107748345,LOC107577958 coding downstream 68840 13882719 ~ 13903655 (+)
AMCG00014440 tfdp1,LOC108266453,LOC108426071,LOC107597491,LOC107748134,LOC107673714 coding downstream 91970 13905849 ~ 13921330 (+)
AMCG00014441 grk1,grk1a,LOC107748333 coding downstream 117003 13930882 ~ 13939105 (+)
AMCG00014442 NA coding downstream 130901 13944780 ~ 13965123 (+)
G70054 NA non-coding upstream 94278 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 410745 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 455964 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 808715 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 1190836 12600104 ~ 12600313 (+)
G70221 NA non-coding downstream 353567 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 652825 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 1365966 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 1536763 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 1636899 15450778 ~ 15451268 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 101961 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 539417 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3639236 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3782501 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 6308589 7464503 ~ 7482560 (+)
AMCG00014456 NA other downstream 375685 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 488568 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1408035 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 1861752 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 2315600 16129479 ~ 16139032 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_06257032_06266210 CUL4A coding CI01000299 null 6255857 ~ 6266210 (-)