AMCG00014445 (cpox,LOC107717573,LOC107585846,LOC107657924,LOC107550392)


Basic Information

Item Value
gene id AMCG00014445
gene name cpox,LOC107717573,LOC107585846,LOC107657924,LOC107550392
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14151299 ~ 14157726 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014445
CACAGCGCACGCCCCTTGTGTTGCGCACTGCCTTCTGGGATTGTAGTTCAAGTGTTCAGCACAACTATCTTGCGAAATGGAAAAGGGGGCTCTAAAGACACAGTTTCCCAAGATGCTTTGCAGTTTAACACTTCAGGTGGGATAGCTACGCTGCAAGCAGAGAGCCGGGGCGTTACAGGGAGACTCCTCGCCGTGTGcgctgtgtctgttttgtaagTTGTGATCTGTGTTCACGTTTTTAAAGGCACTTGAGATGTCTGTCATACTTTTGCTTGGGGTGAGCAGGACCGGTCGCGCCTCGGCCAGACATGTATTGCCTTGTTGGGGAAGAAGGGCTTTGAATGCAAACGTCAGTCGGGCTCTTTTGAACGAAACAAGGTTAGTTTCGCCGAGTGGCAGTCCGTCTGGTACAAACTCAACTGTGAGGTTCATGCACCCCGTCGCCGGAGACAAGACCGCGGCAGGGGGTCGCTACCGGAGGCGCCTGCTTGTAGGTGCGTGTGCCGCGGCGGTAGCGGGGCTTTTCGCCGGGCTCAGTCACTTTCAGCGGGCTGAGATGAAGTCCAGACCCGATTCAGATGACGGGGGAGATGACATCCTGCAGAAGTGCAAAAGTTTCATGTCCGCCCCAGTGACAGACGTCAGGGTCTTGCAGAAGAATAAGGAGGCGATGAGCACGAAGATGGAGCTGCTGATCATGGAAACGCAGGCGGAGTTCTGCAGGGCGCTGGCTGAGGTGGACGGGGGCACTTTCCAGGTGGACCGATGGGACAGAAAGGAAGGTGGTGGTGGCGTGAGCTGTGTGATGCAGGACAGCAAGGTGTTCGAGAAGGCCGGGGTCAATGTGTCCGTCGTGTTCGGACACCTCACAGAGGAAGCGGCCAAGCAGATGACGAGCCGGGGCAAGAAGCTCAAAGGAAAAGATGGAAAGCTGCCATTCTGTGCCATGGGAGTCAGCTCGGTGATCCATCCCAAGAACCCCCACATTCCCACCGTACACTTCAACTACAGATACTTTGAAATAGAAGAGGCTGACGGCTCCAAGCAGTGGTGGTTTGGAGGGGGCACTGACCTGACCCCTGTATACATAGACAAGGCAGACGCTGCACATTTTCATGGTGTCCTGAAGGAGGCCTGTGATAAACATAACCCAAAGCACTACCCAGACTTCAAGAAATGGTGTGACAAATATTTCTTCATCCGGCACAGAGGAGAGACCAGGGGCATCGGGGGCATTTTTTTTGACGACCTGGTCTCTCCCTCCCAAGAGGAGGTGTTTGCCTTTGTGAAAAGCTGTGCCAAGACTGTGGTGCCCTGCTACCTGCCCATCGTGAAGAAACACCTGCACGACTCTGTCACTCCCGAGGAGAAGAGCTGGCAGCAGGTGCGGCGGGGCAGGTATGTGGAGTTTAACTTGGTCTATGATCGGGGAGTCAAGTTTGGTCTAGCAACCCCGGGGTCCAGAATAGAGAGCATCCTCATGTCTCTACCACTAACTGCCAGATGGGAGTATATGCATGAACCTGCTAAGGGCTCCAAAGAAGCAGAAATGCTCGAAGTGCTGAAGAATCCAAAGGAATGGGTTAACTGACCTAAATGATCCCATAGTGCCAGTGCACCTCAGCTTGCTGAGTGTCATTTTGTCTGGATATTTCCAAAGCAGTTTTGtcattgcattcattttgtaaGTGCATAGAGAGCATTTCCTCCAGGACAGTATGAGTACTAGAGCTGACACGGGCTAAGGAATTTGAATAGCTAAGCACTTCTTTATATTGCACTGAGTGGGGCGGTACAGGTGATTTCTTCCCATCACTAAGGTGTGGGGCAGATAGAAAACACTTGCTGTTACCATCTAAAATGTTACACAGGAATTCAATAGAATATACAATGTACACAatttgtatacaatatatgtaattaaatgggAATTTAAACTTGGATTACTATGGACAAAGCCAGATTCTTTAACTTTGATCTGCCGGCTGTTTTCaaaataggttttgttttcctgggtAAATTGagatttacttaattttaagaTTTTTCTTAAAggataaatgtatgtaaaactTTTCTATCCTCTTAGATCGCCTATGAattttgtgctttaaaacaaagtgcCAGATAATTTCCTGTTACTGTGAAATGGTGTATCGTTTTGTTGCAACTTGCAAGTGTAAACACATTCATATCATTCTTGGGGCGCCTTTTCTGgagttttgtgaaaatgtcctgatttttttaaacattattaattgaattttaattgaatagattaatgtaaataaaagatGAAGATGACTTTGGGACTTTTAACACCATTTGTGGACACTATTCTTTCCTGTAAGGAATATTATGGATTTTTCTTCCTTACAGCTGTGCAACTGCTCAGGGGCTCctggtatatttgtttttaatgaatgtggGAAATGGGTTGTGTTTTATGAAATCATTTGAGATTACATATTTGTTCATGCgtcttttttaattaagc

Function

symbol description
cpox Predicted to enable coproporphyrinogen oxidase activity. Acts upstream of or within hemoglobin biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial intermembrane space. Is expressed in hematopoietic system; mesoderm; presumptive blood; and ventral mesenchyme. Human ortholog(s) of this gene implicated in hereditary coproporphyria and liver disease. Orthologous to human CPOX (coproporphyrinogen oxidase).

NR:

description
PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial

GO: NA

KEGG:

id description
K00228 CPOX, hemF; coproporphyrinogen III oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014445 True 2497 mRNA 0.47 7 14151299 14157726

Neighbor

gene id symbol gene type direction distance location
AMCG00014443 NA coding upstream 8226 14138406 ~ 14143073 (+)
AMCG00014444 tpp2,LOC107665822 coding upstream 45805 14085512 ~ 14105494 (+)
AMCG00014442 NA coding upstream 186176 13944780 ~ 13965123 (+)
AMCG00014441 grk1,grk1a,LOC107748333 coding upstream 212194 13930882 ~ 13939105 (+)
AMCG00014440 tfdp1,LOC108266453,LOC108426071,LOC107597491,LOC107748134,LOC107673714 coding upstream 229969 13905849 ~ 13921330 (+)
AMCG00014446 NA coding downstream 2910 14160636 ~ 14160842 (+)
AMCG00014447 NA coding downstream 4399 14162125 ~ 14163322 (+)
AMCG00014458 NA coding downstream 65790 14223516 ~ 14235412 (+)
AMCG00014460 NA coding downstream 80285 14238011 ~ 14241495 (+)
AMCG00014459 NA coding downstream 213419 14371145 ~ 14380019 (+)
G70054 NA non-coding upstream 454428 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 770895 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 816114 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 1168865 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 1550986 12600104 ~ 12600313 (+)
G70221 NA non-coding downstream 9720 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 308978 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 1022119 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 1192916 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 1293052 15450778 ~ 15451268 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 462111 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 899567 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3999386 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 4142651 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 6668739 7464503 ~ 7482560 (+)
AMCG00014456 NA other downstream 31838 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 144721 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1064188 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 1517905 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 1971753 16129479 ~ 16139032 (+)

Expression


Co-expression Network