AMCG00014496 (pdcl3,LOC106586481,LOC102788355)


Basic Information

Item Value
gene id AMCG00014496
gene name pdcl3,LOC106586481,LOC102788355
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15700154 ~ 15703459 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014496
GGTATCCGTCGGACACTTGGGACGGGCGGACTGCGCACTTCCGTGTGTCTAGGTGGGGTGTCAACGTGATTTCATTCGGAGCTTCTgatagaaagagaaaatgcaGGATCCAAATGCAGACACGGAGTGGAATGACATCTTGCGGAGGAAGGGCATCCTGCCTCCAAAGGAGAAGCCGGTtgaggaagaggaagatgaGGAGCATGTGTCACAGCAGCAGTCAGTGGTGAAAACCTATGAGGACATGACTCTGGATGAGCTTGAGGAAAACGAAGATGAGTTCAATGATGAGGACGAGCGAGCCATTGAGATGTACAGacAACAAAGGCTAGCTGAGTGGAAAGCTAAGCAGatcaaaaatgcatttggagAGTTAGTGGAGATCTCTGGTCAGGATTATGTACAAGAAGTAAACAAAGCTGGCGAGGGGATCTGGGTTGTGCTGCATCTTTATAAAACAGGcatCCCTCTCTGCACCTTAATAAATCAGCACCTAACTGAGCTTGCAAGAAAATTCCCACAGACAAAATTTCTCAAGTCAATCTCCACAACCTGTATACCCAATTACCCTGACAGGAATCTGCCCACTATATTTGTGTATCTTGAAGGTGATATGAGGGCACAGTTTATTGGACCACTGCTCTTTGGGggcatgaatttaaaaatagaagaACTGGAGTGGAAACTTTCAGAAGCTGGGGCTGTGAAGACAGACTTGGAGGAAAATCCTAGGAAACAGATTGAGGATAAGTTGATGTCATCAATCAGATGCTCTCTCCCAACAAGAAAGGACATCGACTCAGACGAAGATTAGTTACTGAAGGCTCTGAAGCCCATCGTTGGTGTTTCCACCCAGTACAATGTTGACctattttgcatgttttccttCTGTGTGGTGTATCCGCATCACCTAGACACTCTCCACGGACTGGCCTTGTCTCCGAAGAGAGGCGTCTACCAGGGTCTTCCTTCTGGATAGGATGCACATCGATGTTATGAGGGATGGGAGGATTTCACACTGACCTCATGAGCTGAAACATCATGTCATATTTGGAAatcctgtgtatttttttaagatcaatgtctttttaagaaaaaactaatgttactattaaaataataatactgtaaataatacCATTCTTCTCTGGTATGTGATTTTTAATTcttcaacataaaaatgaagATCAGGTAATCCAAATAAAAAAGGTAGAATATTTGcaccattatttgtattattattggtgtttCAGAAATGTGCTCAGgcaagaaaatacatgtttttcattttttgctgTAAATAGCTTCAAGCAACATGTCTTTTATTGAATAAGCAAACAAATACTCTTAATATGATTCTGCAAACCATCCAAAGGcaataatctaaataaaaaaaatttgACAACCTGGAACTCAGGGGAGAAAACCagcaaagagattttttttccctcatctTGAATATATAAAGTCTGGaatatgtaactgaatgaaGGTAAGCATTAC

Function

symbol description
pdcl3 Involved in positive regulation of gene expression. Acts upstream of or within angiogenesis. Predicted to be located in cytoplasm. Orthologous to several human genes including PDCL3 (phosducin like 3).

NR:

description
PREDICTED: phosducin-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014496 True 1503 mRNA 0.41 6 15700154 15703459

Neighbor

gene id symbol gene type direction distance location
AMCG00014487 zc3h13,LOC105022574,LOC106573267,LOC106510916 coding upstream 29006 15656929 ~ 15671148 (+)
AMCG00014489 lcp1,LOC106582249 coding upstream 45309 15630190 ~ 15654845 (+)
AMCG00014488 NA coding upstream 82989 15600159 ~ 15617165 (+)
AMCG00014482 NA coding upstream 177673 15517871 ~ 15522481 (+)
AMCG00014481 NA coding upstream 200321 15495225 ~ 15499833 (+)
AMCG00014494 NA coding downstream 12341 15715800 ~ 15725440 (+)
AMCG00014495 NA coding downstream 32186 15735645 ~ 15749118 (+)
AMCG00014501 NA coding downstream 77130 15780589 ~ 15781550 (+)
AMCG00014500 LOC101071565 coding downstream 119817 15823276 ~ 15870879 (+)
AMCG00014503 NA coding downstream 171124 15874583 ~ 15877671 (+)
G70418 NA non-coding upstream 175139 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 194106 15505814 ~ 15506048 (+)
G70413 NA non-coding upstream 199322 15500558 ~ 15500832 (+)
G70409 NA non-coding upstream 248886 15450778 ~ 15451268 (+)
G70378 itm2b,LOC108430053 non-coding upstream 269302 15350642 ~ 15430852 (+)
G70496 NA non-coding downstream 23975 15727434 ~ 15728917 (+)
G70562 NA non-coding downstream 214954 15918413 ~ 15918621 (+)
G70637 NA non-coding downstream 533651 16237110 ~ 16240338 (+)
G70735 NA non-coding downstream 786952 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 1027419 16730878 ~ 16733637 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 14255 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 457821 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 1343286 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1495140 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 2010966 13655238 ~ 13689188 (+)
AMCG00014508 NA other downstream 426020 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 762162 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 1661339 17364798 ~ 17487050 (+)
G71004 NA other downstream 2568395 18271854 ~ 18274360 (+)
G71525 NA other downstream 7151883 22855342 ~ 22855646 (+)

Expression


Co-expression Network