AMCG00014553 (atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469)


Basic Information

Item Value
gene id AMCG00014553
gene name atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17364798 ~ 17487050 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014553
AAAAACACTGTCACCCGCTTGATACACTGGTAGGCCtgctattattatatattctataattatTTTCACTATTTTTGTCGAAAGAAATATGAACAATACTTAAACTTTGTTTCCCAATTATATATTTCCCCTGTATCTGGGAGTGGGAGTAGGGCGGGGGAGTAAGTAGGATAAGGAAGGGCGTTCACTGTCTTATAACTTTCACTTtcgatttacattttcttagcgatatgcaatgtgacaatatggtgttaaacataaaataaaatccccaaaACAATGTCTGAAGCCCCTGTCCTCGTCATCTCCGTGATTCTGCTGCTCCAGGACCTAGTCTTATCGCAAGAACTTGTCTATGGATTATTGAATGAAGAAGTTGTGATGTCCccacacatcaaaataaatataactgaaatTTTATGGaaatttgaaaatgacaaactTGCAGAATGGGACTCTATAGAGACATCTTATTTCGGTACTTTTAAGGGTCGAACAGAACTACATAAAAATGGAACTcttggaataaaaaatataacctTTCAAGATAATGGACTTTATACGTTGAGTATACTATCTGGAGAAATTCATGACAAGATTTTTAACCTCACAGTATTAAAACCTGTCTCCAAGCCACATGTAAACTACTCATTTAATGAATCTATCTGCAACTTAACCTGTGTGGGTGACGAGGACATTGGTTACAGCTGGAACATCAATGGTAAAGACCAACTGGATATGAAGACAAATCCACTGACCTTTTCAAAAGACACTGACCTTGATACAGTATACATCTGTAAAGTCAAAAACCCCAAGAGCGAAGAAGAGAGTGACCCCTTTGTTGTGAGAAAATGCTTTCCCGCAGATGGGCTACAAGATACGTACTTCATTCCCTGCTGGAACACAGAGTTCCTCCTCGTCTTACAGATGATCAATGACGGTAGCCAGGAGACCCTCGGGTACATTGGCCACAATGATTCCAATGAGGAAGATGACAGCCTCCAGCCAGGTATAGCCAAGGACCAGCGACAGGATGAAAAAGCTAACTCCCAAGAAGACAGCCACACCAGTGATGAGATGGATGAAGTGCTCAATTTCAATGGAGATAGGAGTGCGCCCAACTTGCAGGCCAGATGCAAGAGTAGCAATTCGTCCCATCACAGTCCTGTCACCAGTGTTGATGACAATGCCACGAGCGCAGCCCTCCCCTCCGACACAATCGCCCCTTTCATTGCCACCACCGCCTGCCTCGACACCATTGTGCCCGTCTGA
>TU88599
ttttttttttttttaaACTTGAcaaattttttttattacactgttaAAAACGTGTATAAAATTGGTCCTGCTCCAGAACAAAGGCACAGAATGTCTTGGTTCCCCATCTCAGATCTCGGAGTTTTctaaaaaacacatctgaagtTACGGAAGTTAAAAGTCAGAGCAGCAAGACTATCATGCATGGAATGGTGTGATGAACAGTGATGGTTTAATAGTacgtctctctctccacccaACCTGAAAAGACAGATGAGGAAGTTAGAATTAGTTTTAAcccaagaacaaaaacaatggaaggggaggaggggggtctTAAATCCAAAACTCAGAACTACTACATTTCAGCGGTTAATAAggagcattttaaaacaagcctTAAAACTAGTTTAAAATTGAACTGGTTATAAACAATACCAAAGCTAAAAGGCTACTTTAGCTCTAAAAGATTATTCTACATAAATTCACTGCTACCTTCTCCAACAATGGAGAATACAAGAGCTACTAACAGGGAAATCCAGTTAAAGCACAGGCATGAGAAACTAGCAGTTGTAGACCTACTTGAAATTACTGCAACAAGctataaatacaattcttaCCCCCTGGGCTGCGTCGGAGGATAAGTTTTCTgatttcatcataaataaaaataaggagGGAGTAAGGGAAAGCGCAGAACCACCAGTTTGGTCTAAAGAggggtgggggaaaaaaataaacagttcaatttcaaaattagTGGCACCATATACACTGAAGCATCTCAAGGcacagcacaatttaaaaacctAAAGTTAACATTAACTATACAAAATTTGTACTTCAAATAGTCAAACAAGATTTAAAAAGGGGTATAGATTGCTCCAATATCACTCAGTAAAGAATAGAATTGACATCAAATGACTAAAACCACCTCAGTGACCTGACTAGAGACAATGTACAACAGGGTCTCCAACCGATAAATGTATACGGTAGTCAAGCGCAAAGCTTTAGGATTTGGACATTGCAATGTTTCAGACTATTCTGTATATACATGTTGGGtaccaagtaaaaaaaaaaaaaagtcaattaacATTTAGTATTGTGTTGGATCTCCAGAATTCCTTCAACTGAGGTAGTGTACTGTGGGTAAGGTCATCAAAAGAATTTCCCTAAATCTCATCATGTCCATCAGCAATACTATGAACAAACCCGTAAACAGGCCCAACCTTAACGTCCCACATACAGTTCAGTCCACAATGTTTGAAGTTTATAGGTTATGCATCAAAATTGCCATTAtctaatacaaattacaaacattaaCTTACTTTAGGGGGTACATTCTGAGGGCAATGTCCATTCCAGGGCAGTAAGACAGGAAGGCAGCCAGAGCAGTTTCTTCAAACAATCCAAATATGAGGATCTTGTTCCTGGGAATAAAAATGTCGATAGTGCCAAATGCTTCCAAAAAAGCCAAAAGTCAAATTAACTCCCACCTTCCTTTGcaaatacataagaaaactAAACTACTGCATGTCAGATTTAAACCAGGTTTTAGGGaggtttcattttattcacaAGGTTCTGCTTCATTACTCTTGTTGCAGATGGGCTACAAGATACGTACTTCATTCCCTGCTGGAACACAGAGTTCCTCCTCGTCTTACAGATGATCAAGTCAGTCCACTGCACAATCACAATGCTGGTAAAGAAGGCTGTGTGGCAGGTAAACTCAACAATCTTTCTCTGTTCATAggtctaataaaaaaaaaaaaagatacaaaaggGGTTAGTTACAAAAGGCCACCCCTTTTCCATCACTTTAGCTGAACTAATCTGGTTTCAGAGAAAGACTGTTCAGAATACTCACCCACTGCTGTCCATAGCTGTCCTCAacatcatttacatatttattatccCAGTCAACACGGATGCCAAGTAGTCTTGATGGCAGGAAACCATTCTCGGCAAGAATGACAAAATAGGTGAAAAAGCCTCCCAGAGCCTGGATCATACCTGAAGACACAAATTTCCTGGTTATTCTTGAACTAAATTTTCTCCCCTCTTCCAAGCGAGAATCTTAAACTAGTGCTTGGTCATAAAATACTGCCCCCACATGCCACCAGTTAAGACACTTACCAATTTGACCATAAGCCATACTGATCAGCCTCTCATTCACCAGTTTGTCCGTTTTGGGATTTCTGGGCTGTCTCTTCATGATGTCGCTCTCTGCTTGTTCATAAGCCAGGGAGATAGCCGGAACCTtgcatagattaaaaaaaaagtaacaaattaaCCCCCCCCACAGATAATGACATCATTCTGGACCATGCATACAGTTTGATCGCTATTTAAACCTTCAAAATAGGGAGATTTCTTGAATACTACAAGTCAAAGCCACATGCTCACCATGTCAGTACCCAAGTCAATGCAAAGAATGGTGACTGTTCCCAGGGGCAGAGGGATGCTGGCAATGATGAAAAGGAGGAAGGGTGTGATCTCAGGAATGTTACTGGTCAGGGTGTAGGCAATGGACTTCTTCAAGTTATCAAAGATCAGACGGCCTATGGAAAACAGAAGTAAGGGGTGTAAACAATGCACTGCAAAATACTACATTCATTTAATCATAATCCAACAAGTTTCCAGACTATTTCATCAACTTGCTTTACCTTCTTCTACACCAGTCACAATGGAAGCAAAGTTGTCATCCAGAAGGATCATGTCAGCAGCCTGTTTGGACACATCTGAGCCCGCAATACCCATGGCAACACCAATATCGGCTTTCTTCAGGGCAGGAGAGTCATTCACACCATCACCAGTCACAGCTACAATAGCaccctGCCTGTTTGGACACATCTGAGCCCGCAATACCCATGGCAACACCAATATCGGCTTTCTTCAGGGCAGGAGAGTCATTCACACCATCACCAGTCACAGCTACAATAGCaccctgaaaatgaaaagtgttgATTAACAAGCTTTGAAC
>TU88601
ttttttttttttttaaACTTGAcaaattttttttattacactgttaAAAACGTGTATAAAATTGGTCCTGCTCCAGAACAAAGGCACAGAATGTCTTGGTTCCCCATCTCAGATCTCGGAGTTTTctaaaaaacacatctgaagtTACGGAAGTTAAAAGTCAGAGCAGCAAGACTATCATGCATGGAATGGTGTGATGAACAGTGATGGTTTAATAGTacgtctctctctccacccaACCTGAAAAGACAGATGAGGAAGTTAGAATTAGTTTTAAcccaagaacaaaaacaatggaaggggaggaggggggtctTAAATCCAAAACTCAGAACTACTACATTTCAGCGGTTAATAAggagcattttaaaacaagcctTAAAACTAGTTTAAAATTGAACTGGTTATAAACAATACCAAAGCTAAAAGGCTACTTTAGCTCTAAAAGATTATTCTACATAAATTCACTGCTACCTTCTCCAACAATGGAGAATACAAGAGCTACTAACAGGGAAATCCAGTTAAAGCACAGGCATGAGAAACTAGCAGTTGTAGACCTACTTGAAATTACTGCAACAAGctataaatacaattcttaCCCCCTGGGCTGCGTCGGAGGATAAGTTTTCTgatttcatcataaataaaaataaggagGGAGTAAGGGAAAGCGCAGAACCACCAGTTTGGTCTAAAGAggggtgggggaaaaaaataaacagttcaatttcaaaattagTGGCACCATATACACTGAAGCATCTCAAGGcacagcacaatttaaaaacctAAAGTTAACATTAACTATACAAAATTTGTACTTCAAATAGTCAAACAAGATTTAAAAAGGGGTATAGATTGCTCCAATATCACTCAGTAAAGAATAGAATTGACATCAAATGACTAAAACCACCTCAGTGACCTGACTAGAGACAATGTACAACAGGGTCTCCAACCGATAAATGTATACGGTAGTCAAGCGCAAAGCTTTAGGATTTGGACATTGCAATGTTTCAGACTATTCTGTATATACATGTTGGGtaccaagtaaaaaaaaaaaaaagtcaattaacATTTAGTATTGTGTTGGATCTCCAGAATTCCTTCAACTGAGGTAGTGTACTGTGGGTAAGGTCATCAAAAGAATTTCCCTAAATCTCATCATGTCCATCAGCAATACTATGAACAAACCCGTAAACAGGCCCAACCTTAACGTCCCACATACAGTTCAGTCCACAATGTTTGAAGTTTATAGGTTATGCATCAAAATTGCCATTAtctaatacaaattacaaacattaaCTTACTTTAGGGGGTACATTCTGAGGGCAATGTCCATTCCAGGGCAGTAAGACAGGAAGGCAGCCAGAGCAGTTTCTTCAAACAATCCAAATATGAGGATCTTGTTCCTGGGAATAAAAATGTCGATAGTGCCAAATGCTTCCAAAAAAGCCAAAAGTCAAATTAACTCCCACCTTCCTTTGcaaatacataagaaaactAAACTACTGCATGTCAGATTTAAACCAGGTTTTAGGGaggtttcattttattcacaAGGTTCTGCTTCATTACTCTTGTTGCAGATGGGCTACAAGATACGTACTTCATTCCCTGCTGGAACACAGAGTTCCTCCTCGTCTTACAGATGATCAAGTCAGTCCACTGCACAATCACAATGCTGGTAAAGAAGGCTGTGTGGCAGGTAAACTCAACAATCTTTCTCTGTTCATAgGTCCACTGCACAATCACAATGCTGGTAAAGAAGGCTGTGTGGCAGGTAAACTCAACAATCTTTCTCTGTTCATAGGt
>TU88604
TTAGACTTGAcaaattttttttattacactgttaAAAACGTGTATAAAATTGGTCCTGCTCCAGAACAAAGGCACAGAATGTCTTGGTTCCCCATCTCAGATCTCGGAGTTTTctaaaaaacacatctgaagtTACGGAAGTTAAAAGTCAGAGCAGCAAGACTATCATGCATGGAATGGTGTGATGAACAGTGATGGTTTAATAGTacgtctctctctccactgttttgaatgttctcCATAAAACACATCTGATGTTAAGTTAAATGTCAGATCAGCAAGACTACCATGCATGCAACGGTGTGATGTACAGTGATGGTTTAATAGTACGTCTCTTTCTCCACCCAACCTGAAAAGTAAGATGAAGAAATT

Function

symbol description
atp1a1 Enables P-type sodium:potassium-exchanging transporter activity; chaperone binding activity; and steroid hormone binding activity. Involved in several processes, including cellular monovalent inorganic cation homeostasis; cellular response to steroid hormone stimulus; and ion transmembrane transport. Located in several cellular components, including T-tubule; apical plasma membrane; and lateral plasma membrane. Part of sodium:potassium-exchanging ATPase complex. Implicated in Charcot-Marie-Tooth disease type 2DD.

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014553 False 1272 mRNA 0.42 6 17364798 17431231
TU88599 True 2965 lncRNA 0.40 3 17403511 17453367
TU88601 False 1812 TUCP 0.38 3 17403511 17448453
TU88604 False 372 lncRNA 0.38 2 17418439 17487050

Neighbor

gene id symbol gene type direction distance location
AMCG00014552 NA coding upstream 31983 17328913 ~ 17332815 (+)
AMCG00014536 gdap2,LOC104943794,LOC104954255 coding upstream 599246 16737483 ~ 16765552 (+)
AMCG00014538 NA coding upstream 632929 16722198 ~ 16731869 (+)
AMCG00014537 NA coding upstream 645061 16692012 ~ 16719737 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding upstream 753137 16583824 ~ 16611661 (+)
AMCG00014560 NA coding downstream 292515 17779565 ~ 17780081 (+)
AMCG00014565 NA coding downstream 462510 17949560 ~ 18029896 (+)
AMCG00014564 NA coding downstream 551058 18038108 ~ 18067182 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding downstream 583484 18070534 ~ 18080340 (+)
AMCG00014569 NA coding downstream 837220 18324270 ~ 18332414 (+)
G70897 NA non-coding upstream 13846 17349436 ~ 17350952 (+)
G70883 NA non-coding upstream 47242 17316253 ~ 17317556 (+)
G70865 NA non-coding upstream 111127 17250319 ~ 17253671 (+)
G70846 NA non-coding upstream 191736 17132063 ~ 17173062 (+)
G70835 NA non-coding upstream 266834 17028960 ~ 17097964 (+)
G70908 NA non-coding downstream 2776 17489826 ~ 17490607 (+)
G70938 LOC107575789,LOC100846954 non-coding downstream 163721 17650771 ~ 17651002 (+)
G71036 kctd12 non-coding downstream 978169 18465219 ~ 18468335 (+)
G71038 NA non-coding downstream 989993 18477043 ~ 18478028 (+)
G71136 NA non-coding downstream 1201498 18688548 ~ 18692633 (+)
AMCG00014525 NA other upstream 895589 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 1225766 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 1678899 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 2122465 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 3007930 14302447 ~ 14356868 (+)
G71004 NA other downstream 784804 18271854 ~ 18274360 (+)
G71525 NA other downstream 5368292 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 9417827 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 10348453 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 10381653 27868703 ~ 27879800 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G106819 NA non-coding NC_035908.1 CM008311.1 29052531 ~ 29058905 (+)