XLOC_000612 (SORCS3)


Basic Information

Item Value
gene id XLOC_000612
gene name SORCS3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 48256950 ~ 48490034 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001048
GAAACTTCAAGTTCATTTTAACTCTTGTGCGCTCCAGAAGTTTTACTGTTAACCGTAATTGTTCACTACTTGTCCTGAAATATGGGACGTCACCTGTAGGTcgctttcaccagaagaaaacaaTTGTCTTCAATGAATATAAATGTGATGGGGTGGAATAAGAGTAATGACTATATGTCGGGGAATAAATAAGTGCAtacagatttattcatttttattctcTTTTCACAGGTGATTCTGATTCTCACCAAGCTGTATGACTTTCACCTTGGCAGCGTCACAGAGAGCACGCTATGGAGATCCACGGATTATGGCAGCACTTATGAGAGGCTGAATGATAAAGTGGGAGTGAAGACGGTGTTGAGTTACCTCTATGTTTGCCCCACCAACAAGAGGAAGATAATGGTGCTGACGGACCCAGAGTTTGAGAGCAGTATTCTCATCAGCTCAGATGAAGGTGCCAGCTATCAGAAGTACCGCTTGAACTTCTTCGTCTTGAGTTTACTTTTCCATCACACACAGGAGGACTGGGCTTTGGCCTACAGCCACGACCAGAAGCTTTACAGTTCATTTGACTTTGGCCGAAAGTGGCAGCTGGTTCATGAGCGAGTGACTCCCAACCGCTTCTACTGGTCAGTAACCGGTTTGGACAAGGAGTTTGATTTGGTACACATGGAGGCTCACACACCTGATGGCCATTGTCAGTATGTGACATGCAGAGCTCAAGCCTGCTCTGAATCCAGCAGAACGCATCCATTTCCTGGATACATCGAGACCAACTCACTCGTGGTTCAGGATGAATATGTGTTTGTTCAGGTGACGACCACTGGCAGAGCGAGCTACTATGTGTCCTATCAAAGAGAAGCTTTTATACGCATCAAACTGCCAAAATACTCCTTGCCAAAGGACATGCATATCGTGAGCACAGATCAAGGTCAGGTTTTCACCGCCGTCCAGGAGTGGAACCAGAACGACACCTACAACCTGTACATATCGGACTCGCGTGGGATTTACTTCACCCTAGCCTTGGAGAACGTCAGGACCAGCCGCGGCCTCGGAGGAAACAGCATGATCGACCTTTACGAGGTAGCAGGGATTGAAGGAATGCTAATCGCTAATAGGAAGGTGGAGAACCAGGTGAAGACGTACATCACTTATAACAAGGGCCGCGACTGGAGGCTTCTGCAGGCACCCAGTACTGACCTCGCTGGAAATCCGATTCACTGCGTGCTGCCGTTTTGCTCGCTGCACCTACAACTGCAGATGTCAGAGAACCCATACCTTTCCGGATCCATCTCCACCAAGAGCTCTGCGCCGGGAGTCATCGTGGCTACAGGAAATATTGGATCTGAGCTGTCTTACAATAATGTGGCCATGTTCATTTTATCAGACGCAGGCAATAACTGGAGACAGATTTTTGAGGAAGAGCACAACGTGTGGTTTCTGGACAAAGGTGGAGCTTTGGTAGCCGTGAAGCAGCCCACTGTGCCCACTAGACATCTTTGGATCAGCTTTGATGAAGGTCGTCAGTGGACTCGTCACAGTTTCTCAGCCATGCCGCTGTTCGTGGACGGTGTGTTAGTGGAGGCAGGTGCAGAGAATCAGATCATGACATTTTTCGGACACTTCAGCCATCGGTCCGAATGGCAGCTCATTAAAATCGACTACAAGTCCGTATTCACCAGAAGGTGCACAGAAGGGGACTATCAAACCTGGCACCTGCATAACCAGGGTGAGCCGTGCATAATGGGTCAAAAGCAGATCTACATGAAGCGTCGGCCTGGAAATTATTGTATGGTGGGATGGGACAACTCTAGGATCCTGTCTGCTGAACCCTGCATATGCAGAGCACATGACTTTGAGTGTGATTATGGTTTTGAGAGGAGAGGGGATGGAAACTGTCTGCCGGCGTTTTGGTTCAACCCTTCTATAGTGTCTCGAAGCTGCAGCCAAGGGCAAAACTTCCTCAACAGCACAGGataTCGTAAGGTGGTAGCCAATAACTGCACTAAAGGTGTGAAGGAAATGTACACGGCCAGAAAACAGCAGTGTCCGAACCGCCCGCCACGTGGTTTAGTCCTGACAACACGTGACGAAAAACTCACAGCAAACATGGGCAGCAATGTGACCTTCCTGGTGCGACTTGAAGAGGGTGACTCCATGAGGACCAACATTCAGCTGGACTTTGGAGACGGAACGGCGGTGTCCTACTCCAACCTGAGCTGGACGCAGGAGGGCATCAAACACGTGTACCGCAGCGCCGGCATCTTCAGGGTCACAGCACTGGCCGAGAACAGCCTCGGGTTCGACACATCCTCCCTTTATCTGCACGTGACATgccCTGTGGAGCATATTCAGCTGTTGGCTCCATATGTGGTCATTAAGAATAAGGAGGTGAACCTGACGACAGTGGTCTGGCCTTCTCATTTCAGAACGCTCACCTATTTCTGGTGGCTGGGGAACAGCACTGAGCCAATAGTAACGCTGGACAGCAGCATTTCCCACACATTCAGCAGCGAGGGCATGTCCACTGTGACTGTTCAGGTCTCATCAGGAGACTCAATACTGCAGGACAGCAGAACCATCGCAATACAGGAATTCTTCAAATCGCTGCTTTTATCTTTCTCTCCGAATCTGGACGAGGCCAACCCTGACATCCCCGAGTGGAGACTGGATGTGGCTCGCGTAATTAAGAAGGCTGTTCTTCAAGTCGCTGACGTACCGGAAGAGCAGCTGCTGGTGGCAGTTTTTCCAGGCATCCCGACCGCTGCCGAACTCTTCCTGCTTCCACCAAGGAACCAATCGAATGGCAGGAAACAAACTGAGGAGGATCTGGAGCAGATATCTGAAATCCTGGTCAATGCATTAAATCAGATTTCAGTGGAGTTTGAGTTGAAGCCTGGCTCCCGCGTCATCGTTTACATCACTCAATTAACTTTAGCTCCACTGGTGGACTCAATCCCAAGACACAGCAGTTCCGCCATGCTGATGCTTCTGTCCGTGGTGTTCCTGGGTTTAGCCGTATTTCTCATCTACAAATTTAAGAGAAAAATCCCCTGGATCAACATCTACGCGGAGGTGAATCATGAGAAGGAGCAGGAGATGATCAATACGGTGGGCCAGAATGACGCCACACCAAAAATCACCCTGAGTGAATTCTCCACCCAGAAGGAGCTGATGGAGAAAGAGCTGGAGGCCCGTGCCAAACGCGGTGTGATCCACACCTGTGAAAGCACAAGGGAGATCCCCAACTGCACGAGTGTCTGAAAACGCCAGGAAGAAAAGTGGAGGCGTGTTGTAATATTGTGTACAGAGGTATCACAATTTTAAAGGGTgacagttttacttttttttttttttgcttcttttgtaATTTCGAAACACTGTCATTGTTAATAGTTTTCTAAGGAGCTCAGATTTGCATGGGTGTCTTGTTTGTTACAATCTGTGTGGAATAATAAGACTAGAGTTACAGTACAAGTCACCGAAAACATGCTTGGAAGAGAAATACGGAGCAACTTTTTTGAAAATCGCAGAACAAAGAGCATAAAGGCAAGCCGGAGAAAAAGCCACCATTTCTCTCCCAGTGTATTTCCTTTGTGTGTAATTATGGGTATGTTTACACAACAATTTcaactaaaaactgaaaatattttaTGAGTTTTGGCCTGAAAACAAGCTTTTGGTGTCTATGAGTAAGCTATAAATCCTGATTTTGTCAAAATGGTGATGTCATGCGTTTGCATATTAGGAATGTGTATCAACAAAGTCCATTTAAAGTCTGTGTTAAAGTTTCCTATGTTGAAGGACTCCCTGttgaaatggaatattaagtagggggtgtGGCTTTTTTGCGCATTATTCCCTGATAGCAAACGAATAGTAAGAAGGTTGTGGTAAGGAAAATTGCGAATGAAGCCGTCAAAGTGACATAATTAGTGAAGGATAGCCACTCCAATCACAGAAGCACATTATCAAACTttaattgaagattaccaaaaatcTTGTCTTTTTTTTCGCTGGATTAACTTGCtccgaatgttatcactcgataaAATGGGCATTATCAAttttatcagctgatagatatgggccagtaaggGCCTAGTACTAGTAGGCACAGAatgctgttatcatccattcatATGGTTATCAGCTATattagagaagactccagatccagatctgtttttacattactgtgacggttgggtttagggttggggtagacgttaaactTGTTAACCAGCACTCAATTTTGGctatttacacctacctaactttaaattgtaacagttcctgactccagtcAGCTAAAAACACAAATTTTGTATCATTGGGAAGAAGACGCTTTTATCTTTACTGTGGTAAAGGAGGAAGttacatgttaaaaatataaaaagctaTACATTAAGAAGTCatgagaaaaaaactaaattgtatggtgttcaatatttgtttttccatacaAACATAGGGAAGcattaatgtaatgtcctagaaaaacatatgacttgaaagccaagtgtctcatgagtttctattttaaatttgattaagatagcatgcaaaataagatttctgtaaaatgttttctgagaCTATATCGGTGTCCTTCTTTCCCTCACCGTCAaaggcactttctcaaaaatgaccttcccaaactaaaacagtaacagttgctgaatattttggtctacattcacagttcatgtatctttggaaagaagacactctgggatttattatccatcatctagagtttataatgctcaaaatgaaaaaagttatagatgcctaagtaatgtaaaaaaaaaattgcaccgCACTAAACATTTTACAAAGATGTGAAATTGTCCTGGAGCAGAAAACTAATAGGAATTTGATGCCAATATCATGCAAAATAACATTTCTGGAATTCATTAAATACAgttaatgagaaatgtaataaacaatataaataatgtaaagtGAATTGATAacattaaagccattttaaaaggAAATTCACATTCTACCTCAtcagtgttaaagtttatagttAGACATTCACCTATTAGGACATTTAATAAGATATAAATTTGGACATTtacttttttaacatcaaattaccTCATCTAAATAACCTTACAAATGAAAAGTCTTTGTCCCTTGAGAGATTTTGTTGATATTTGCATTACTATGCTGTTTTATAATCAAAGTGATCCCAAAATGATAATAATCGCAACCATTCCTGTGACAATATAATCGCACAACAAAAATATCGCGACTGGCCTAGTTATGTATCTCGAAACTTATCCAGATATGCAACATAACCTACTTCTGGAATAGCCTCGACCCCCTCTCCCCAGGtctgcagtgttattttacaaaGCAAcagtcgccacctactggcctgaCATGCAGACTAcattatttatactttatttatacctAATAACATCGCAACAATTTCTGTGATGATATATCATCCATAAAGTTAACTTGCTTTCTTGAATACGCCCCAGTTCTGTAttatttctttacaaagtgacaaTTGCCACCTACTGGCCTGACATGCAGACtacattatttataatatctATACTCTATATAATAATATTGCTCATAGCAACAAttgctgcactgaaaaaaagtcttgcatgcagaactgttgcaaacaatttgtttgtgtttaatttaaaaaaactaattaagtttagtcatgttcaacttaatttgtttgtttaaattcagcccaaataaattgtttacaacctcttaacataaagaaattgagtaaatccaaggaatgatctttgaataatttttttcagtgtgtgctgATATATCACACAACAAAAATTCGATATCATGACAGGGCTAGAGGATATCCAGTCATATATCCCTAAACTTGTCCAGATAActaacataacctgctttctggaatactcATCCAGTTTAGTATTATTTCTTTACAACGTGACAGTCGCCACCTACTGGAATGACATGCATACTACGCGattaataattttcagtttttagtcCACTGTTGTTGTGTAAACATCTTTAGTCTGGGTCAATATTTCAGAGTGActttgtgagagagagaaaaaaagtggcttttggttttaaaaatctgccattttgtcaaGAACTTCTTTCGTTTGTCTAACAGTTTAAACTGATTTTTCACACATTGTGAAGATTTAGCGACTATATTGATTTAACtttaagtttttgtttattttatctcaGTAGGTCACCTcatttttgtatttgttataatGTGAACTGTGAGAGCAAATTTGCAGCTgagacatacaaaaaaaaaagttaacagcaTTGATATCCCTTACTGTATTACAGCTTTGCCTTTATGTAAGCAATCTTCTGAATTGGTAATTGAAAAGTTTCAGAGTTTAATTACACTTTTATCTATAGCCTTCATCTAAAGGTCGAGAGATCTGAACGAAAATGTGAACTTTTCAGTCAAAAGTTTGTAGAATACTCTCCCAAAAGCACTGTGATAAAATGTCAATTTGAAGGCAagctttttttgtatttctgtaaAAGGGAGAATTTAACTATTCACAACcacaaaactatttttattttttgtttttatcgtttttttaaatgcaaacgtAGTTCAGTGTCCACGAAAATATCAAACAAGAACGTTTTGTGAAATAAACGTCTTGATATTCAAACATGGTCACAATTGAACTTGGtatctttttttaaagatattattaaacATTGAGCAAAAAATTCCTCTAAGCTCCTCAAACAAGTTTGCTTTTTgtgaatttaatatatatatttttatttttatctttacatTTATCTTATTTATAGCAtctaatttcattattattttttttattattatctttgcaTTTATCTCATTTTTAGactttactcatttatttactggttggtttttatttatctttgcattatttttaaaaacatttttatttataattattattattattattgttgttg

Function

symbol description
sorcs3 Predicted to act upstream of or within learning; memory; and regulation of long-term synaptic depression. Predicted to be located in postsynaptic density. Predicted to be active in glutamatergic synapse. Predicted to be integral component of postsynaptic density membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103535

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001048 True 6993 mRNA 0.40 26 48256950 48490034

Neighbor

gene id symbol gene type direction distance location
XLOC_000611 NA coding upstream 24638 48231856 ~ 48232312 (+)
XLOC_000610 NA coding upstream 97992 48158397 ~ 48158958 (+)
XLOC_000607 cfap58 coding upstream 244693 47831619 ~ 48012257 (+)
XLOC_000609 CR381623.2 coding upstream 342741 47914095 ~ 47914209 (+)
XLOC_000608 CR381623.1 coding upstream 359565 47897269 ~ 47897385 (+)
XLOC_000613 NA coding downstream 345190 48835224 ~ 48836922 (+)
XLOC_000614 CR788248.1 coding downstream 433294 48923328 ~ 48927049 (+)
XLOC_000615 NA coding downstream 644430 49134464 ~ 49152007 (+)
XLOC_000616 NA coding downstream 754318 49244352 ~ 49252654 (+)
XLOC_000617 caly coding downstream 776852 49266886 ~ 49295059 (+)
XLOC_000602 NA non-coding upstream 797444 47453593 ~ 47459506 (+)
XLOC_000623 BX321880.1 non-coding downstream 1100667 49590701 ~ 49590823 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000119_00691777_00879449 NA coding CI01000119 null 691777 ~ 879449 (-)